ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdc07 |
|---|---|
| Clone Library Name | barley_pub |
>RL22B_ARATH (Q9M9W1) 60S ribosomal protein L22-2| Length = 124 Score = 166 bits (419), Expect = 5e-41 Identities = 85/110 (77%), Positives = 93/110 (84%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 243 VSF IDC+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSVT+TR+KSK+TVT+DG F Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVTITREKSKITVTADGQF 74 Query: 242 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 S KHNVRDWLRVIAANK+RN+YELRYFNIAENEGEEED Sbjct: 75 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124
>RL22C_ARATH (Q9FE58) 60S ribosomal protein L22-3| Length = 124 Score = 162 bits (409), Expect = 7e-40 Identities = 83/110 (75%), Positives = 92/110 (83%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 243 VSF IDC+KPV+DKIMEIASLEKFLQERIKV GGKAG LGDSV++TR+KSK+TVT+DG F Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVSITREKSKITVTADGQF 74 Query: 242 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 S KHNVRDWLRVIAANK+RN+YELRYFNIAENE EEED Sbjct: 75 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124
>RL22A_ARATH (Q9SRX7) 60S ribosomal protein L22-1| Length = 127 Score = 117 bits (294), Expect = 2e-26 Identities = 61/110 (55%), Positives = 79/110 (71%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAF 243 VSFVIDC+KPV+D I+EIA+LEKFLQERIKV G KAG LG+SV++TR K+ V ++ F Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRG-KAGALGNSVSITRYNGKINVNANSNF 76 Query: 242 SXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 S K+N+RDWLRVIA+NK++NVYE+RYF I + E+ Sbjct: 77 SKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126
>RL22_RAT (P47198) 60S ribosomal protein L22| Length = 127 Score = 110 bits (274), Expect = 3e-24 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 1/111 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 246 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEEP 76 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_PIG (P67985) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 109 bits (273), Expect = 4e-24 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 1/111 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 246 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_MOUSE (P67984) 60S ribosomal protein L22 (Heparin-binding protein HBp15)| Length = 127 Score = 109 bits (273), Expect = 4e-24 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 1/111 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 246 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_HUMAN (P35268) 60S ribosomal protein L22 (Epstein-Barr virus small| RNA-associated protein) (EBER-associated protein) (EAP) (Heparin-binding protein HBp15) Length = 127 Score = 109 bits (273), Expect = 4e-24 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 1/111 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 246 + F +DCT PVED IM+ A+ E+FLQERIKV GKAGNLG V T+ R KSK+TVTS+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKAGNLGGGVVTIERSKSKITVTSEVP 76 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_TRIGR (P13732) 60S ribosomal protein L22 (Development-specific protein| 217) Length = 130 Score = 108 bits (271), Expect = 7e-24 Identities = 60/111 (54%), Positives = 76/111 (68%) Frame = -3 Query: 425 SVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 246 ++ F IDCT PVED IM+ ++ E+FLQERIKV GK NL ++ + R KSKVTVTS+ A Sbjct: 22 TLKFTIDCTLPVEDGIMDASNFEQFLQERIKV-NGKTKNLTTNIVIERKKSKVTVTSEIA 80 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+N+RDWLRV+AANKE YELRYF I +++ EEED Sbjct: 81 FSKRYLKYLTKKYLKKNNLRDWLRVVAANKES--YELRYFQINQDDEEEED 129
>RL22_XENLA (P50886) 60S ribosomal protein L22| Length = 127 Score = 102 bits (253), Expect = 9e-22 Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 246 + F +DCT PVED IM+ A+ E+FL +RIKV GK GNLG V ++ R KSK+TV+S+ Sbjct: 18 LKFTLDCTHPVEDGIMDAANFEQFLHDRIKV-NGKVGNLGGGVVSIERSKSKITVSSEVP 76 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+N+RDWLRV+A +KE YELRYF I ++E EEED Sbjct: 77 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 125
>RL22_GADMO (P52865) 60S ribosomal protein L22 (Fragment)| Length = 124 Score = 95.1 bits (235), Expect = 1e-19 Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 1/108 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV-TVTRDKSKVTVTSDGA 246 + F +DCT PVED IM+ A+ E+FLQERIKV GK+GNLG+ V ++ R SK++V S+ Sbjct: 15 LKFTLDCTHPVEDGIMDAANFEQFLQERIKV-NGKSGNLGNGVVSIERXXSKISVNSEVP 73 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGE 102 FS K+N+RDWLRV+A KE YELRYF I ++E E Sbjct: 74 FSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEE 119
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 94.4 bits (233), Expect = 2e-19 Identities = 49/111 (44%), Positives = 71/111 (63%) Frame = -3 Query: 425 SVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGA 246 S+ F IDCT ED IM++A EK+++ R+KV GK NLG++VT R K K+ V+SD Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKV-NGKVNNLGNNVTFERSKLKLIVSSDVH 248 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 FS K+++RDW+RV+A E++ YELRYF I+ N+ E++D Sbjct: 249 FSKAYLKYLTKKYLKKNSLRDWIRVVA--NEKDSYELRYFRISSNDDEDDD 297
>RL22_SCHPO (Q09668) 60S ribosomal protein L22| Length = 117 Score = 87.0 bits (214), Expect = 3e-17 Identities = 50/111 (45%), Positives = 67/111 (60%), Gaps = 1/111 (0%) Frame = -3 Query: 425 SVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRD-KSKVTVTSDG 249 S ++ID T V DKI ++A+ EK+L +RIKV GK GNLG SV V+R+ SK+ V + Sbjct: 9 SNKYIIDATAAVNDKIFDVAAFEKYLIDRIKV-DGKTGNLGSSVVVSREGSSKIAVIAHI 67 Query: 248 AFSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEE 96 FS KH++RDWLRV++ K VYELRY+N+ EEE Sbjct: 68 DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKK--GVYELRYYNVVVGNDEEE 116
>RL22_CAEEL (P52819) 60S ribosomal protein L22| Length = 130 Score = 81.6 bits (200), Expect = 1e-15 Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 1/109 (0%) Frame = -3 Query: 422 VSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLG-DSVTVTRDKSKVTVTSDGA 246 + F ++C PVED I+ I LE FL E+IKV GK G+L ++V V KSKV+V S+ Sbjct: 21 LKFNVECKNPVEDGILRIEDLEAFLNEKIKV-NGKTGHLAANNVKVEVAKSKVSVVSEVP 79 Query: 245 FSXXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEE 99 FS ++++RDWLRV+A NK N YE+RYF+I N+GE+ Sbjct: 80 FSKRYLKYLTKKYLKRNSLRDWLRVVAVNK--NTYEVRYFHI--NDGED 124
>RL22A_YEAST (P05749) 60S ribosomal protein L22-A (YL31) (RP4)| Length = 120 Score = 72.8 bits (177), Expect = 6e-13 Identities = 40/109 (36%), Positives = 60/109 (55%) Frame = -3 Query: 419 SFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS 240 +F +D + P E+ + + AS K+L + IKV G GNLG++VTVT D + VTV S FS Sbjct: 13 TFTVDVSSPTENGVFDPASYAKYLIDHIKVEGA-VGNLGNAVTVTEDGTVVTVVSTAKFS 71 Query: 239 XXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 K+ +RDW+R ++ + N Y L ++ + E EEED Sbjct: 72 GKYLKYLTKKYLKKNQLRDWIRFVST--KTNEYRLAFYQVTPEEDEEED 118
>RL22B_YEAST (P56628) 60S ribosomal protein L22-B| Length = 121 Score = 65.1 bits (157), Expect = 1e-10 Identities = 35/109 (32%), Positives = 59/109 (54%) Frame = -3 Query: 419 SFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS 240 + +D + P E+ + + AS K+L + IKV G GNLG+++ VT D S VTV S FS Sbjct: 13 TLTVDVSSPTENGVFDPASYSKYLIDHIKVDGA-VGNLGNAIEVTEDGSIVTVVSSAKFS 71 Query: 239 XXXXXXXXXXXXXKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED 93 K+ +RDW+R ++ +N Y+L ++ + + +EE+ Sbjct: 72 GKYLKYLTKKYLKKNQLRDWIRFVSI--RQNQYKLVFYQVTPEDADEEE 118
>SAPC_SHIFL (P0AGH7) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 9.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 322 PPATLMRSWRNFSSDAISMI 381 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>SAPC_ECOLI (P0AGH5) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 9.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 322 PPATLMRSWRNFSSDAISMI 381 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31
>SAPC_ECOL6 (P0AGH6) Peptide transport system permease protein sapC| Length = 296 Score = 28.9 bits (63), Expect = 9.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +1 Query: 322 PPATLMRSWRNFSSDAISMI 381 PP TL +WR F SDA +M+ Sbjct: 12 PPGTLRTAWRKFYSDASAMV 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,103,050 Number of Sequences: 219361 Number of extensions: 663876 Number of successful extensions: 2404 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2341 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2388 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
