ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdc01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475352.1| Oryza sativa (japonica cultivar-group), predic... 94 1e-16
2dbj|AK072286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-16
3gb|AC093919.2| Oryza sativa (japonica cultivar-group) chromosome... 78 8e-12
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 8e-12
5ref|XM_463480.1| Oryza sativa (japonica cultivar-group), predic... 42 0.46
6dbj|AK105943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
7ref|XM_548990.2| PREDICTED: Canis familiaris Pim-2 oncogene (LOC... 38 7.1
8gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 38 7.1
9emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-6... 38 7.1
10gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 38 7.1

>ref|XM_475352.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1107

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 54   tggcttgcgagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccg 113
            ||||| || |||||||||||||||||  ||||||  || || || || |||||||| |||
Sbjct: 1040 tggctggccagcatggcgttgctccggttaatcaaagcgtcgtgatcgagaacgaaaccg 981

                                               
Query: 114  ccggggtagcgaggctgggagccgaggtcgtcgag 148
            ||||||||||||||||||| |||||||||||||||
Sbjct: 980  ccggggtagcgaggctgggcgccgaggtcgtcgag 946



to top

>dbj|AK072286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012O04, full
            insert sequence
          Length = 2453

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 54   tggcttgcgagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccg 113
            ||||| || |||||||||||||||||  ||||||  || || || || |||||||| |||
Sbjct: 1522 tggctggccagcatggcgttgctccggttaatcaaagcgtcgtgatcgagaacgaaaccg 1463

                                               
Query: 114  ccggggtagcgaggctgggagccgaggtcgtcgag 148
            ||||||||||||||||||| |||||||||||||||
Sbjct: 1462 ccggggtagcgaggctgggcgccgaggtcgtcgag 1428



to top

>gb|AC093919.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_D01,
             complete sequence
          Length = 112761

 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                            
Query: 102   agaacgaagccgccggggtagcgaggctgggagccgaggtcgtcgag 148
             |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 48893 agaacgaaaccgccggggtagcgaggctgggcgccgaggtcgtcgag 48939



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 8e-12
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 102      agaacgaagccgccggggtagcgaggctgggagccgaggtcgtcgag 148
                |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 22094912 agaacgaaaccgccggggtagcgaggctgggcgccgaggtcgtcgag 22094958



to top

>ref|XM_463480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1416

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 62  gagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccgccggg 118
           |||||| || ||||||||||| | ||| || || ||||| |||||||| ||||||||
Sbjct: 987 gagcattgcattgctccgactgaccagagcgtcgtggtcgagaacgaaaccgccggg 931



to top

>dbj|AK105943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C02, full
            insert sequence
          Length = 1432

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 62   gagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccgccggg 118
            |||||| || ||||||||||| | ||| || || ||||| |||||||| ||||||||
Sbjct: 1048 gagcattgcattgctccgactgaccagagcgtcgtggtcgagaacgaaaccgccggg 992



to top

>ref|XM_548990.2| PREDICTED: Canis familiaris Pim-2 oncogene (LOC442959), mRNA
          Length = 1230

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 114 ccggggtagcgaggctggg 132
           |||||||||||||||||||
Sbjct: 243 ccggggtagcgaggctggg 225



to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 126     ggctgggagccgaggtcgt 144
               |||||||||||||||||||
Sbjct: 4211219 ggctgggagccgaggtcgt 4211237



to top

>emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-68I8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174860

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 42     gcccgcatcttgtggcttg 60
              |||||||||||||||||||
Sbjct: 119087 gcccgcatcttgtggcttg 119069



to top

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 91     catcatggtcaagaacgaagccg 113
              |||||| ||||||||||||||||
Sbjct: 238579 catcattgtcaagaacgaagccg 238601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 694,370
Number of Sequences: 3902068
Number of extensions: 694370
Number of successful extensions: 41828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41695
Number of HSP's gapped (non-prelim): 133
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top