Clone Name | rbasdc01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_475352.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1107 Score = 93.7 bits (47), Expect = 1e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 54 tggcttgcgagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccg 113 ||||| || ||||||||||||||||| |||||| || || || || |||||||| ||| Sbjct: 1040 tggctggccagcatggcgttgctccggttaatcaaagcgtcgtgatcgagaacgaaaccg 981 Query: 114 ccggggtagcgaggctgggagccgaggtcgtcgag 148 ||||||||||||||||||| ||||||||||||||| Sbjct: 980 ccggggtagcgaggctgggcgccgaggtcgtcgag 946
>dbj|AK072286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012O04, full insert sequence Length = 2453 Score = 93.7 bits (47), Expect = 1e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 54 tggcttgcgagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccg 113 ||||| || ||||||||||||||||| |||||| || || || || |||||||| ||| Sbjct: 1522 tggctggccagcatggcgttgctccggttaatcaaagcgtcgtgatcgagaacgaaaccg 1463 Query: 114 ccggggtagcgaggctgggagccgaggtcgtcgag 148 ||||||||||||||||||| ||||||||||||||| Sbjct: 1462 ccggggtagcgaggctgggcgccgaggtcgtcgag 1428
>gb|AC093919.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_D01, complete sequence Length = 112761 Score = 77.8 bits (39), Expect = 8e-12 Identities = 45/47 (95%) Strand = Plus / Plus Query: 102 agaacgaagccgccggggtagcgaggctgggagccgaggtcgtcgag 148 |||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 48893 agaacgaaaccgccggggtagcgaggctgggcgccgaggtcgtcgag 48939
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 8e-12 Identities = 45/47 (95%) Strand = Plus / Plus Query: 102 agaacgaagccgccggggtagcgaggctgggagccgaggtcgtcgag 148 |||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 22094912 agaacgaaaccgccggggtagcgaggctgggcgccgaggtcgtcgag 22094958
>ref|XM_463480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 42.1 bits (21), Expect = 0.46 Identities = 48/57 (84%) Strand = Plus / Minus Query: 62 gagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccgccggg 118 |||||| || ||||||||||| | ||| || || ||||| |||||||| |||||||| Sbjct: 987 gagcattgcattgctccgactgaccagagcgtcgtggtcgagaacgaaaccgccggg 931
>dbj|AK105943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C02, full insert sequence Length = 1432 Score = 42.1 bits (21), Expect = 0.46 Identities = 48/57 (84%) Strand = Plus / Minus Query: 62 gagcatggcgttgctccgactaatcagggcatcatggtcaagaacgaagccgccggg 118 |||||| || ||||||||||| | ||| || || ||||| |||||||| |||||||| Sbjct: 1048 gagcattgcattgctccgactgaccagagcgtcgtggtcgagaacgaaaccgccggg 992
>ref|XM_548990.2| PREDICTED: Canis familiaris Pim-2 oncogene (LOC442959), mRNA Length = 1230 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 ccggggtagcgaggctggg 132 ||||||||||||||||||| Sbjct: 243 ccggggtagcgaggctggg 225
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 ggctgggagccgaggtcgt 144 ||||||||||||||||||| Sbjct: 4211219 ggctgggagccgaggtcgt 4211237
>emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-68I8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174860 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gcccgcatcttgtggcttg 60 ||||||||||||||||||| Sbjct: 119087 gcccgcatcttgtggcttg 119069
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 catcatggtcaagaacgaagccg 113 |||||| |||||||||||||||| Sbjct: 238579 catcattgtcaagaacgaagccg 238601 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 694,370 Number of Sequences: 3902068 Number of extensions: 694370 Number of successful extensions: 41828 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41695 Number of HSP's gapped (non-prelim): 133 length of query: 148 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 127 effective length of database: 17,151,101,840 effective search space: 2178189933680 effective search space used: 2178189933680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)