>ZN593_MOUSE (Q9DB42) Zinc finger protein 593 (Zinc finger protein T86)|
          Length = 116

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 33/59 (55%), Positives = 40/59 (67%)
 Frame = -2

Query: 484 DEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGMG 308
           D DLPG G   CL C RYF D A  + H+RSK HKKR+KQLS   P++Q +A+ A GMG
Sbjct: 34  DPDLPGGGLHRCLACARYFIDSANLKTHFRSKDHKKRLKQLS-VEPYSQEEAERAAGMG 91

>ZN593_HUMAN (O00488) Zinc finger protein 593 (Zinc finger protein T86)|
          Length = 116

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = -2

Query: 484 DEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGMG 308
           D DLPG G   CL C RYF D    + H+RSK HKKR+KQLS   P++Q +A+ A GMG
Sbjct: 34  DPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS-VEPYSQEEAERAAGMG 91

>BUD20_YEAST (Q08004) Bud site selection protein 20|
          Length = 166

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
 Frame = -2

Query: 595 KTVRRGKFLVKADDAVYDELVKLADQGKDCEGKPL--PVDEDLPGMGQFYCLHCDRYFAD 422
           KT RR + L    D +Y++L       K+   K L  P+DE  PG+GQ YC+HC +Y   
Sbjct: 10  KTKRRTRDL----DLIYNDL-----STKESVQKLLNQPLDETKPGLGQHYCIHCAKYMET 60

Query: 421 EAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGMGM 305
               + H + K HK+RVK+L G  P+TQ  +D A G  +
Sbjct: 61  AIALKTHLKGKVHKRRVKELRG-VPYTQEVSDAAAGYNL 98

>Z231_ENCCU (Q8SWF6) Zinc finger C2H2 protein ECU02_0310|
          Length = 104

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
 Frame = -2

Query: 622 KVKKRRLNCKTVRRGK---FLVKADDAVYDELVKLADQGKDCEGKPLPVDEDLPGMGQFY 452
           K KKRR N   +R  +   F  K  D V +++            K +  D +LPG G FY
Sbjct: 7   KQKKRRSNKNRLRIKRARLFGPKDIDQVKEDIESQ---------KKIEYDPELPGGGHFY 57

Query: 451 CLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAGGM 311
           C  CDR+F  E V  +H RS  H++R K++   A H+Q DA+ A G+
Sbjct: 58  CCECDRHFITEKVLMEHKRSNPHRRRAKEVREVA-HSQRDAEWAVGL 103

>ZN346_MOUSE (Q9R0B7) Zinc finger protein 346 (Just another zinc finger protein)|
          Length = 294

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 454 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQID----ADLAGGMGMPDNGLK 287
           +C  C   F D A+ + HY  KRH+K+  +L   A + ++     +DL  G G P    K
Sbjct: 186 FCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTCK 245

Query: 286 LM 281
           ++
Sbjct: 246 IV 247

>ZN277_HUMAN (Q9NRM2) Zinc finger protein 277|
          Length = 438

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 451 CLHCDRYFADEAVKEDHYRSKRHKK 377
           CL+C++ F D+   +DH R K+H+K
Sbjct: 214 CLYCEKTFRDKNTLKDHMRKKQHRK 238

>ZN533_MOUSE (Q8BXJ8) Zinc finger protein 533|
          Length = 482

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 454 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSG--PAPHTQIDADLAGG 314
           +C  C+      A  + HY  K H+KRVKQLS   P P  Q    L  G
Sbjct: 35  FCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLSDGQPPPPVQGSVPLLAG 83

>RU1C_XENLA (Q03369) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 466 MGQFYCLHCDRYFADE--AVKEDHYRSKRHKKRVK 368
           M +FYC +CD Y   +  +V++ H   ++HK+ VK
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35

>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 466 MGQFYCLHCDRYFADE--AVKEDHYRSKRHKKRVK 368
           M +FYC +CD Y   +  +V++ H   ++HK+ VK
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35

>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 466 MGQFYCLHCDRYFADE--AVKEDHYRSKRHKKRVK 368
           M +FYC +CD Y   +  +V++ H   ++HK+ VK
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK 35

>SPP2_CANGA (Q6FMB1) Pre-mRNA-splicing factor SPP2|
          Length = 169

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
 Frame = -2

Query: 622 KVKKRRLNCKTVRRGKFLVK------ADDAVYDELVKLADQGKDCEGKPLPVDE----DL 473
           K KKR++   T       +K       DD++  EL  L ++ +D E + +PV+E     L
Sbjct: 48  KPKKRKIELATAESETIALKRAKNNIGDDSIVQELEALPEKVEDKEYEEMPVEEFGAAML 107

Query: 472 PGMGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQIDADLAG 317
            GMG          + DE   ED   SK H K++       PH QI  +  G
Sbjct: 108 RGMG----------WTDENELED---SKSHSKKL-------PHEQIHPEGLG 139

>ZMAT2_MOUSE (Q9CPW7) Zinc finger matrin type 2|
          Length = 199

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = -2

Query: 622 KVKKRRLNCKTVRRGKFLVKADDAVYDELVKLADQGKDCE---GKPLPVDEDLPG--MGQ 458
           K+ ++RL   T  R K   K    V  EL++  D   D E   GK + + +  P   MG 
Sbjct: 23  KLAEKRL---TEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGG 79

Query: 457 FYCLHCDRYFADEAVKEDHYRSKRHKKRV 371
           +YC  CD    D     DH   K+H++ +
Sbjct: 80  YYCNVCDCVVKDSINFLDHINGKKHQRNL 108

>ZMAT2_HUMAN (Q96NC0) Zinc finger matrin type 2|
          Length = 199

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = -2

Query: 622 KVKKRRLNCKTVRRGKFLVKADDAVYDELVKLADQGKDCE---GKPLPVDEDLPG--MGQ 458
           K+ ++RL   T  R K   K    V  EL++  D   D E   GK + + +  P   MG 
Sbjct: 23  KLAEKRL---TEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGG 79

Query: 457 FYCLHCDRYFADEAVKEDHYRSKRHKKRV 371
           +YC  CD    D     DH   K+H++ +
Sbjct: 80  YYCNVCDCVVKDSINFLDHINGKKHQRNL 108

>CCD16_MOUSE (Q8R1N0) Coiled-coil domain-containing protein 16 (Ovus mutant|
           candidate gene 1 protein)
          Length = 363

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 466 MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQ 338
           +GQ  C  C+     E + + H   K+H++RV +L G    TQ
Sbjct: 48  LGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQ 90

>CCD16_RAT (Q3MHS2) Coiled-coil domain-containing protein 16|
          Length = 370

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 466 MGQFYCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQ 338
           +GQ  C  C+     E + + H   K+H++RV +L G    TQ
Sbjct: 48  LGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQ 90

>PURA_BARHE (Q6G4G5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 429

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 643 EASARTAKVKKRRLNCKTVRRGKFLVKADD-AVYDELVKLADQ 518
           EA+   AK+K+   +   +RRG  + + D  A+YDEL+++AD+
Sbjct: 153 EANTLMAKIKRLLRHHNALRRGMGVAEIDSQALYDELMQVADE 195

>PRP9_YEAST (P19736) Pre-mRNA-splicing factor PRP9|
          Length = 530

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -2

Query: 559 DDAVYDELVKLADQGKDCEGKPLPVDEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHK 380
           D A  + L+K   +   C G    +  +  G+   YC  C R+F   +V E H   K HK
Sbjct: 252 DAAAVENLIKSDFEHSYCRGS---LRSEAKGI---YCPFCSRWFKTSSVFESHLVGKIHK 305

Query: 379 K 377
           K
Sbjct: 306 K 306

>ZN346_PONPY (Q5R4W8) Zinc finger protein 346|
          Length = 310

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 454 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQID----ADLAGGMGMPDNGLK 287
           +C  C   F D  + + HY  K+H+K+  +L   A + ++      D   G G P    K
Sbjct: 202 FCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCK 261

Query: 286 LM 281
           ++
Sbjct: 262 IV 263

>ZN346_HUMAN (Q9UL40) Zinc finger protein 346 (Just another zinc finger protein)|
          Length = 294

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 454 YCLHCDRYFADEAVKEDHYRSKRHKKRVKQLSGPAPHTQID----ADLAGGMGMPDNGLK 287
           +C  C   F D  + + HY  K+H+K+  +L   A + ++      D   G G P    K
Sbjct: 186 FCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCK 245

Query: 286 LM 281
           ++
Sbjct: 246 IV 247

>JJJ1_YEAST (P53863) J protein type 1|
          Length = 590

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 556 DAVYDELVKLADQGKDCEGKPLPVDEDLPGMGQFYCLHCDRYFADEAVKEDHYRSKRHKK 377
           + VYD   +  +   D EG+ L  +          C  C++ F  E   ++H  +K HKK
Sbjct: 315 EKVYDNFGEFENSKNDKEGEVLIYE----------CFICNKTFKSEKQLKNHINTKLHKK 364

Query: 376 RVKQL 362
            ++++
Sbjct: 365 NMEEI 369

>RS5_PYRHO (O59439) 30S ribosomal protein S5P|
          Length = 236

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +2

Query: 446 EAVELAHAREVLVDGQRLSLAVLALVGQLDELVVDGVVGFDEELAAAHRLAVETALLDL- 622
           E +++A    +   G+R+   VLA VG  D  V  G +G   E+  A R A+  A L++ 
Sbjct: 64  EIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLG-IGHGREVGIAIRKAINYAKLNII 122

Query: 623 -----CGAGTC 640
                CG+  C
Sbjct: 123 EIKRGCGSWEC 133

>RS5_PYRFU (Q8U017) 30S ribosomal protein S5P (PfS5)|
          Length = 236

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +2

Query: 446 EAVELAHAREVLVDGQRLSLAVLALVGQLDELVVDGVVGFDEELAAAHRLAVETALLDL- 622
           E +++A    +   G+R+   VLA VG  D  V  G +G  +E+  A R A+  A L++ 
Sbjct: 64  EVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLG-IGHGKEVGIAIRKAINYAKLNII 122

Query: 623 -----CGAGTC 640
                CG+  C
Sbjct: 123 EIKRGCGSWEC 133

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 394 SGSDPPSRPRPQSTDRSGGSRTGPCQGG 477
           S    P R RP +    GG R GP QGG
Sbjct: 184 SSQPAPERERPAARPGPGGPRPGPAQGG 211

>ZN385_HUMAN (Q96PM9) Zinc finger protein 385 (Hematopoietic zinc finger|
           protein) (Retinal zinc finger protein)
          Length = 366

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = -2

Query: 451 CLHCDRYFADEAVKEDHYRSKRHKKRVKQLS-----GPAPHTQIDADLAGGMGMPDNG 293
           C  C   F  ++  E HY+  RH +RVK +      G  P  +   D A     P NG
Sbjct: 56  CNICQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNG 113

>ZN451_HUMAN (Q9Y4E5) Zinc finger protein 451 (Coactivator for steroid|
           receptors)
          Length = 1061

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 454 YCLHCDRYFADEAVKEDHYRSKRHKKRV 371
           YC  C++ F DE   ++H ++  HK RV
Sbjct: 363 YCPDCNQVFVDETSTQNHKQNSGHKVRV 390


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,705,303
Number of Sequences: 219361
Number of extensions: 1724095
Number of successful extensions: 5586
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5584
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)