ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdb21 |
|---|---|
| Clone Library Name | barley_pub |
>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 317 Score = 157 bits (397), Expect = 3e-38 Identities = 84/109 (77%), Positives = 91/109 (83%), Gaps = 8/109 (7%) Frame = -3 Query: 673 VSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 494 VSEMLGNVNTS ALSAFEKMEEKVM MESQAEALGQL DDLEGKFA+LET+SVDDDLAQ Sbjct: 209 VSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVDDDLAQ 268 Query: 493 MRKELSGSSLKGELPQGRTATP--------RDRDIERELNELREKANDY 371 M+KE+SGSS KGELP GRTA RD +IE ELNELR+KAN+Y Sbjct: 269 MKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317
>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor| (M30) Length = 323 Score = 146 bits (368), Expect = 6e-35 Identities = 79/111 (71%), Positives = 90/111 (81%), Gaps = 11/111 (9%) Frame = -3 Query: 673 VSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 494 VSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQL DDLEGKFAMLET+SVDDDLA Sbjct: 212 VSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLAN 271 Query: 493 MRKELSGSSLKGELPQGRTATP-----------RDRDIERELNELREKAND 374 ++KEL+GSS KGELP GR++T RD DIE EL +LR+++ + Sbjct: 272 LKKELAGSSKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKE 322
>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 330 Score = 140 bits (354), Expect = 3e-33 Identities = 73/108 (67%), Positives = 85/108 (78%), Gaps = 7/108 (6%) Frame = -3 Query: 673 VSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQ 494 V EM+G VNTS ALSAFEKMEEKVM MES+A+AL Q+G D+LEGKF MLET+SVDDDLA Sbjct: 223 VQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLAD 282 Query: 493 MRKELSGSSLKGELPQGRTATP-------RDRDIERELNELREKANDY 371 ++KELSGSS KGELP GR+ +D +IE ELNELR KAND+ Sbjct: 283 LKKELSGSSKKGELPPGRSTVAASTRYPFKDSEIENELNELRRKANDF 330
>Y617_SYNY3 (Q55707) Hypothetical protein sll0617| Length = 267 Score = 70.5 bits (171), Expect = 4e-12 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 15/115 (13%) Frame = -3 Query: 673 VSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTS-VDDDLA 497 + + LG + TSSA SAFE+ME KV+ ME+ ++A G+L +E +FA LE +S V+D+LA Sbjct: 152 LQQTLGGLGTSSATSAFERMENKVLDMEATSQAAGELAGFGIENQFAQLEASSGVEDELA 211 Query: 496 QMRKELSGSSLKG---ELPQ-----------GRTATPRDRDIERELNELREKAND 374 ++ ++G +L G PQ A+ D I++EL++LR + N+ Sbjct: 212 ALKASMAGGALPGTSAATPQLEAAPVDSSVPANNASQDDAVIDQELDDLRRRLNN 266
>PSPA_BACSU (P54617) Phage shock protein A homolog| Length = 226 Score = 37.7 bits (86), Expect = 0.032 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Frame = -3 Query: 649 NTSSALSAFEKMEEKVMTMESQAEALGQLGA------DDLEGKFAMLETTSVDDDLAQMR 488 +TS ++SAF +ME+KV QA A+ +L + DL K+ ++ VDD+LA ++ Sbjct: 160 STSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAALK 219 Query: 487 KEL 479 ++ Sbjct: 220 AKM 222
>EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1| Length = 838 Score = 35.8 bits (81), Expect = 0.12 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Frame = -3 Query: 565 LGADDL-EGKFAM---LETTSVDDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELN 398 L A++L E +FA+ LE+ S DDD+ ++ +ELS +S + G P R++ R L+ Sbjct: 675 LDANNLPEMQFALEQELESNSSDDDVVEVHRELSHNSSSNDEDDGNDEDPLSREMSRRLS 734 Query: 397 ELREKAND 374 E AND Sbjct: 735 --FESAND 740
>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog| Length = 223 Score = 35.4 bits (80), Expect = 0.16 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Frame = -3 Query: 658 GNVNTSSALSAFEKMEEKVMTMESQAEALGQLGAD-DLEGKFAML-ETTSVDDDLAQMRK 485 G A+ AF +ME+KV ME + +A+G+L D D + + L VDD LA ++ Sbjct: 157 GFSKAGGAMDAFNEMEQKVAGMEDRNKAMGELRNDQDFDAQLKDLGRDKDVDDALAALKA 216 Query: 484 ELSGSS 467 ++ S+ Sbjct: 217 KVQSSN 222
>MYO5A_MOUSE (Q99104) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,| non-muscle) Length = 1853 Score = 33.1 bits (74), Expect = 0.79 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%) Frame = -3 Query: 634 LSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGE 455 +S F K++++V +E + QL D+L+ K + + ++ R ++ G+ L+ E Sbjct: 1152 MSLFLKLQKRVTELEQEK----QLMQDELDRKEEQVFRSKAKEE---ERPQIRGAELEYE 1204 Query: 454 LPQGRTATPRDRDIERELNELR----EKANDY*ILQGMPVYRAGRDLLSQRTPE 305 + + ++ ++ ELNELR EK+ G P YR + L+ + E Sbjct: 1205 SLKRQELESENKKLKNELNELRKALSEKSAPEVTAPGAPAYRVLMEQLTSVSEE 1258
>MYO5A_HUMAN (Q9Y4I1) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,| non-muscle) (Myosin heavy chain 12) (Myoxin) Length = 1855 Score = 32.3 bits (72), Expect = 1.3 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 4/114 (3%) Frame = -3 Query: 634 LSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGE 455 +S F K++++V +E + + + D+L+ K + + ++ R ++ G+ L+ E Sbjct: 1152 MSLFLKLQKRVTELEQEKQVM----QDELDRKEEQVLRSKAKEE---ERPQIRGAELEYE 1204 Query: 454 LPQGRTATPRDRDIERELNELR----EKANDY*ILQGMPVYRAGRDLLSQRTPE 305 + + ++ ++ ELNELR EK+ G P YR + L+ + E Sbjct: 1205 SLKRQELESENKKLKNELNELRKALSEKSAPEVTAPGAPAYRVLMEQLTSVSEE 1258
>FTSH_STRR6 (P59652) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 32.3 bits (72), Expect = 1.3 Identities = 25/96 (26%), Positives = 40/96 (41%) Frame = -3 Query: 667 EMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMR 488 E++ NV T+ A + FE+ + M ++ +LG EG AML S +++ Sbjct: 512 EIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISE-- 569 Query: 487 KELSGSSLKGELPQGRTATPRDRDIERELNELREKA 380 +TA D ++ LNE R KA Sbjct: 570 ---------------QTAYEIDEEVRSLLNEARNKA 590
>FTSH_STRPN (O69076) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 652 Score = 32.3 bits (72), Expect = 1.3 Identities = 25/96 (26%), Positives = 40/96 (41%) Frame = -3 Query: 667 EMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMR 488 E++ NV T+ A + FE+ + M ++ +LG EG AML S +++ Sbjct: 512 EIIFNVQTTGASNDFEQATQMARAMVTEYGMSEKLGPVQYEGNHAMLGAQSPQKSISE-- 569 Query: 487 KELSGSSLKGELPQGRTATPRDRDIERELNELREKA 380 +TA D ++ LNE R KA Sbjct: 570 ---------------QTAYEIDEEVRSLLNEARNKA 590
>HMCS_YEAST (P54839) Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) (HMG-CoA| synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) Length = 491 Score = 30.8 bits (68), Expect = 3.9 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 11/99 (11%) Frame = -3 Query: 658 GNVNTSSALSAFEKMEEKVMTMESQAEALGQLGADDLEGK-----------FAMLETTSV 512 GN+ T+S +AF A L +G+DDL+GK A L + + Sbjct: 370 GNMYTASVYAAF-------------ASLLNYVGSDDLQGKRVGLFSYGSGLAASLYSCKI 416 Query: 511 DDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNE 395 D+ + KEL + +L + T TP+D + EL E Sbjct: 417 VGDVQHIIKEL---DITNKLAKRITETPKDYEAAIELRE 452
>STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty acid synthase| beta subunit Length = 1914 Score = 30.8 bits (68), Expect = 3.9 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -3 Query: 445 GRTATPRDRDIERELNEL--REKANDY*ILQGMPVYRAGRDLLSQRTPEKRIACRFVQCA 272 G T T R ER + + R + + + +G PV R + QR PE+ ++ + +C Sbjct: 1239 GDTVTTSSRITERTITTIGQRVEISAELLREGKPVVRLQTTFIIQRRPEESVSQQQFRCV 1298 Query: 271 FEPSM 257 EP M Sbjct: 1299 EEPDM 1303
>TRUB_PSEF5 (Q4KIF4) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 305 Score = 30.4 bits (67), Expect = 5.1 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%) Frame = -3 Query: 532 MLETTSVDDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKAND----Y*I 365 +L++ + LAQ+ K + + +GE+ Q R T DIE L E R + Y Sbjct: 69 LLDSDKGYETLAQLGKTTTTADAEGEVLQTREVTVGRADIEAVLPEFRGEIKQIPPMYSA 128 Query: 364 LQ--GMPVYRAGR-DLLSQRTPEKRIACRFVQCAFE 266 L+ G P+Y+ R + +R P R AFE Sbjct: 129 LKRDGQPLYKLARAGEVVEREPRSVTIARLELLAFE 164
>SYFB_SYNP6 (Q5N5G8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 811 Score = 30.4 bits (67), Expect = 5.1 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = -3 Query: 622 EKMEEKVMTMESQAEALGQLGADDLEGKFAML--ETTSVDDDLAQMRKELSGSSLKGELP 449 +++ E + ++++ E L LGADD+E + T VDD + Q+ Sbjct: 419 QRINELLGPVQAEDEELKDLGADDIERLLTAIGCHLTLVDDAVWQV-------------- 464 Query: 448 QGRTATPRDRDIERELNELREKANDY 371 R R RD+ERE++ + E A Y Sbjct: 465 --RVPPYRYRDLEREIDLIEEVARLY 488
>SYFB_SYNP7 (P74764) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 810 Score = 30.4 bits (67), Expect = 5.1 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = -3 Query: 622 EKMEEKVMTMESQAEALGQLGADDLEGKFAML--ETTSVDDDLAQMRKELSGSSLKGELP 449 +++ E + ++++ E L LGADD+E + T VDD + Q+ Sbjct: 418 QRINELLGPVQAEDEELKDLGADDIERLLTAIGCHLTLVDDAVWQV-------------- 463 Query: 448 QGRTATPRDRDIERELNELREKANDY 371 R R RD+ERE++ + E A Y Sbjct: 464 --RVPPYRYRDLEREIDLIEEVARLY 487
>UT14A_MOUSE (Q640M1) U3 small nucleolar RNA-associated protein 14 homolog A| (Juvenile spermatogonial depletion-like X-linked protein) (Jsd-like X-linked protein) Length = 767 Score = 30.4 bits (67), Expect = 5.1 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%) Frame = -3 Query: 667 EMLGNVNTSSALSAFEKMEE----KVMTMESQ-----AEALGQLGADDLEGKFAMLETTS 515 E L V+ +AL EKME+ + M+++ Q A++ + DLE + AM E + Sbjct: 269 EQLRKVDPDAALEELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLA 328 Query: 514 VDDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKANDY 371 + +L Q + +S S +G + P DI E+ + + N + Sbjct: 329 KNKELTQKLQVVSESEEEGGADEEEALVP---DIVNEVQKTADGPNPW 373
>TPM_TURCO (Q7M3Y8) Tropomyosin (Major allergen Tur c 1) (Fragments)| Length = 146 Score = 30.4 bits (67), Expect = 5.1 Identities = 27/110 (24%), Positives = 48/110 (43%) Frame = -3 Query: 622 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPQG 443 E+ EE++ T + E + A+D E K A+ E DL + L + K Sbjct: 30 ERNEERLQTATERLEEASKYIAEDAERKLAITEV-----DLERAEARLEAAEAKSLEISE 84 Query: 442 RTATPRDRDIERELNELREKANDY*ILQGMPVYRAGRDLLSQRTPEKRIA 293 + A+ R+ E + +L ++ LQ V R +LL+++ K I+ Sbjct: 85 QEASQREDSYEETIRDLTQRLKTVSKLQ-KEVDRLEDELLAEKEKYKAIS 133
>TRUB_PSEPF (Q3KI82) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 305 Score = 30.0 bits (66), Expect = 6.7 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%) Frame = -3 Query: 532 MLETTSVDDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKAND----Y*I 365 +L++ + LAQ+ K + + +GE+ Q R T DIE L + R + + Y Sbjct: 69 LLDSDKGYETLAQLGKTTTTADAEGEVLQERPVTVGQADIEAVLPKFRGQISQIPPMYSA 128 Query: 364 LQ--GMPVYRAGR-DLLSQRTPEKRIACRFVQCAFE 266 L+ G P+Y+ R + +R P R AFE Sbjct: 129 LKRDGQPLYKLARAGEVVEREPRSVTIARLELLAFE 164
>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) Length = 1217 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Frame = -3 Query: 628 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE-------- 482 + + +E + MES E+L DL + ++ + VD D++ Q+++E Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 481 --LSGSSLKGELPQGRTATPRDRDIERELNELRE 386 L G + E R +E+ELNELRE Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome segregation protein SmcD) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) (Mad member-interacting protein 1) Length = 1217 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Frame = -3 Query: 628 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE-------- 482 + + +E + MES E+L DL + ++ + VD D++ Q+++E Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 481 --LSGSSLKGELPQGRTATPRDRDIERELNELRE 386 L G + E R +E+ELNELRE Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) (Chromosome-associated polypeptide) (hCAP) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) Length = 1217 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Frame = -3 Query: 628 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE-------- 482 + + +E + MES E+L DL + ++ + VD D++ Q+++E Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 481 --LSGSSLKGELPQGRTATPRDRDIERELNELRE 386 L G + E R +E+ELNELRE Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>CWF16_SCHPO (Q9P7C5) Cell cycle control protein cwf16| Length = 270 Score = 30.0 bits (66), Expect = 6.7 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = -3 Query: 622 EKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPQG 443 EK+E+K + + Q + L D+L K A ++DD +A ++++ GS E + Sbjct: 141 EKLEQKTLDTKRQMQISDAL--DELREKSARRSRVNIDDAIALLKEDAYGSI---EEEES 195 Query: 442 RTATPRDRDIERELNEL 392 + + +I+RE L Sbjct: 196 KKRKFEEEEIDREAKSL 212
>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin sulfate| proteoglycan 6) Length = 1218 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Frame = -3 Query: 628 AFEKMEEKVMTMESQAEALGQLGADDLEGKFAMLETTSVD---DDLAQMRKE-------- 482 + + +E + MES E+L DL + ++ + VD D++ Q+++E Sbjct: 759 SLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNER 818 Query: 481 --LSGSSLKGELPQGRTATPRDRDIERELNELRE 386 L G + E R +E+ELNELRE Sbjct: 819 IKLEGIITRVETYLNENLRKRLDQVEQELNELRE 852
>TIG_SYNY3 (Q55511) Trigger factor (TF)| Length = 471 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/89 (26%), Positives = 38/89 (42%) Frame = -3 Query: 589 SQAEALGQLGADDLEGKFAMLETTSVDDDLAQMRKELSGSSLKGELPQGRTATPRDRDIE 410 S+ E + +L AD LE +F DD++ K+ G G+LP+ DR + Sbjct: 273 SEFETMAELKAD-LEKQFQEQAKQRTDDNIKAAIKKKLGELFTGDLPETMIKQECDRLVA 331 Query: 409 RELNELREKANDY*ILQGMPVYRAGRDLL 323 + EL D ++R G D+L Sbjct: 332 QTAMELERMGLDV-----SQLFRQGDDML 355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,292,953 Number of Sequences: 219361 Number of extensions: 1903503 Number of successful extensions: 4736 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4600 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4727 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
