Clone Name | rbasdb06 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ290421.1|HVU290421 Hordeum vulgare mRNA for BAX inhibitor 1 (pBI-1 gene) Length = 744 Score = 765 bits (386), Expect = 0.0 Identities = 395/399 (98%) Strand = Plus / Minus Query: 1 cgacttgtcgcctgcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaa 60 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct: 711 cgacttgtcgcctgcgttcttgagcatgatgatgaggactcggacgaggacggcaacaaa 652 Query: 61 gtcggtgaagagggtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 gtcggtgaagagggtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctc 592 Query: 121 gatgatctcctgcgtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 gatgatctcctgcgtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaac 532 Query: 181 ctcaaacatgaagctgccagaggagtggccaaagatggacgtggcaaactgcagccagag 240 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 531 ctcaaacatgaagctgccagaggagtggccaaagatggacgtgacaaactgcagccagag 472 Query: 241 caggatcgacaggccanacgagagcaggccaccgaggtacaggtactccctgcgcttggc 300 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 caggatcgacaggccagacgagagcaggccaccgaggtacaggtactccctgcgcttggc 412 Query: 301 gatgatggcggcgccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 gatgatggcggcgccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcac 352 Query: 361 gaggatgcttgggtcaaagtctatggcaagctcaatcag 399 ||||||||||||||||||||||||||||||||||||||| Sbjct: 351 gaggatgcttgggtcaaagtctatggcaagctcaatcag 313
>ref|XM_463955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 555 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 512 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 453 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 452 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 393 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 333 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 332 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 273 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 272 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 213 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 212 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 153 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 152 tcaaagtctacagcaagct 134
>ref|XM_463954.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 735 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 676 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 675 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 616 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 556 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 555 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 496 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 495 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 436 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 435 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 376 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 375 tcaaagtctacagcaagct 357
>ref|XM_507433.1| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.1-1 mRNA Length = 1168 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 846 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 787 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 786 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 727 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 667 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 666 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 607 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 606 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 547 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 546 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 487 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 486 tcaaagtctacagcaagct 468
>ref|XM_506699.2| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.1-1 mRNA Length = 1193 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 857 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 798 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 797 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 738 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 678 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 677 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 618 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 617 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 558 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 557 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 498 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 497 tcaaagtctacagcaagct 479
>dbj|AB025926.3| Oryza sativa BI-1 mRNA for Bax inhibitor-1, complete cds Length = 1181 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 832 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 773 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 772 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 713 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 712 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 653 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 652 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 593 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 592 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 533 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 532 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 473 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 472 tcaaagtctacagcaagct 454
>dbj|AK101060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022C21, full insert sequence Length = 1193 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 857 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 798 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 797 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 738 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 678 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 677 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 618 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 617 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 558 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 557 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 498 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 497 tcaaagtctacagcaagct 479
>dbj|AK061564.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E05, full insert sequence Length = 1071 Score = 416 bits (210), Expect = e-113 Identities = 336/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 735 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 676 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 675 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 616 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 556 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 555 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 496 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 495 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 436 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||||||| | Sbjct: 435 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgcttgag 376 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 375 tcaaagtctacagcaagct 357
>dbj|AK061953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F03, full insert sequence Length = 1168 Score = 408 bits (206), Expect = e-111 Identities = 335/379 (88%) Strand = Plus / Minus Query: 14 gcgttcttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagg 73 ||||||||||||||||||| ||||| |||| || ||||| || ||||| ||||||||| Sbjct: 846 gcgttcttgagcatgatgacgaggatccggacaaggacggccacgaagtcagtgaagagg 787 Query: 74 gtgagggcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgc 133 ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 786 gtgagtgcgtgcttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgc 727 Query: 134 gtgtcgtacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 193 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 gtgtcatacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaag 667 Query: 194 ctgccagaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacagg 253 ||||| | |||||||||||||||||| | |||||||||||||||||||||||| || ||| Sbjct: 666 ctgccggtggagtggccaaagatggatgcggcaaactgcagccagagcaggatggagagg 607 Query: 254 ccanacgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcg 313 ||| | ||||||| ||||| ||||| ||||||||||| |||||||| | |||||| ||| Sbjct: 606 ccagaagagagcaaaccaccaaggtagaggtactccctacgcttggcaacgatggcagcg 547 Query: 314 ccagagaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttggg 373 | || |||||||||||| || ||||| ||||| ||||| |||| ||||| ||| ||| | Sbjct: 546 caagtgaagcacccaaatgcaatggcagttccaacaaatgctgttacgagaatgtttgag 487 Query: 374 tcaaagtctatggcaagct 392 |||||||||| ||||||| Sbjct: 486 tcaaagtctacagcaagct 468
>gb|AY105656.1| Zea mays PCO153521 mRNA sequence Length = 1096 Score = 289 bits (146), Expect = 3e-75 Identities = 305/359 (84%) Strand = Plus / Minus Query: 20 ttgagcatgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagggtgagg 79 ||||||||||||| |||||| ||||||| ||||| || ||||| ||||||||||||||| Sbjct: 781 ttgagcatgatgacgaggacgcggacgaggacggccacgaagtctgtgaagagggtgagg 722 Query: 80 gcgtgcttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgcgtgtcg 139 |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 721 gcgtgcttgacgtggtccatgtcgccgcggtgcgccctctcgatgatctcctgcgtgtcg 662 Query: 140 tacaccatgtaccccaggaagatcaacaggccaaagtaaacctcaaacatgaagctgcca 199 ||||||| ||| ||||||||||| | ||| || ||||| ||||| |||||||||||| Sbjct: 661 tacaccacgtagcccaggaagatgagcagcccgaagtagacctcgaacatgaagctggtt 602 Query: 200 gaggagtggccaaagatggacgtggcaaactgcagccagagcaggatcgacaggccanac 259 | ||||||||| |||||||| ||| | |||||||||||||||||| || || || || Sbjct: 601 gcggagtggccgaagatggagccggctagctgcagccagagcaggatggagagccccgac 542 Query: 260 gagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcgccagag 319 |||||||| ||||| ||||| ||||||||||||||| |||| | ||||| ||||| | | Sbjct: 541 gagagcagcccacccaggtagaggtactccctgcgcctggccaccatggccgcgccggtg 482 Query: 320 aagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttgggtcaaa 378 |||||| | || |||||||| || || || ||| | ||||| ||||||||||||||||| Sbjct: 481 aagcacgcgaacgcgatggcagtccccacgaacgccgtcaccaggatgcttgggtcaaa 423
>emb|AJ278816.1|HVU278816 Hordeum vulgare partial mRNA for putative BAX inhibitor 1 (pBI-1 gene) Length = 438 Score = 281 bits (142), Expect = 8e-73 Identities = 142/142 (100%) Strand = Plus / Minus Query: 258 acgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcgccag 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 acgagagcaggccaccgaggtacaggtactccctgcgcttggcgatgatggcggcgccag 377 Query: 318 agaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttgggtcaa 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 agaagcacccaaaggcgatggcggttccgacaaaccctgtcacgaggatgcttgggtcaa 317 Query: 378 agtctatggcaagctcaatcag 399 |||||||||||||||||||||| Sbjct: 316 agtctatggcaagctcaatcag 295
>gb|AY107681.1| Zea mays PCO116018 mRNA sequence Length = 978 Score = 248 bits (125), Expect = 1e-62 Identities = 235/272 (86%) Strand = Plus / Minus Query: 53 gcaacaaagtcggtgaagagggtgagggcgtgcttgatgtagtccatgtcgccatggtgc 112 |||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||| Sbjct: 742 gcaacaaagtcggtgaagagagtcagcgcgtgcttgatgtagtccatgtccccacggtgc 683 Query: 113 gccctctcgatgatctcctgcgtgtcgtacaccatgtaccccaggaagatcaacaggcca 172 |||||||||||||||||||| ||||| ||||||| || |||||||| | || |||||| Sbjct: 682 gccctctcgatgatctcctgggtgtcaaacaccatatatcccaggaaaaccaggaggcca 623 Query: 173 aagtaaacctcaaacatgaagctgccagaggagtggccaaagatggacgtggcaaactgc 232 ||||| | ||||||||||||| | | || |||||||||||| || || ||||||||| Sbjct: 622 aagtagagctcaaacatgaaggtcgcgctggtgtggccaaagattgaagtagcaaactgc 563 Query: 233 agccagagcaggatcgacaggccanacgagagcaggccaccgaggtacaggtactccctg 292 |||||||| || || || |||||| | || ||||| || |||||||||||||| |||||| Sbjct: 562 agccagagaagaatggagaggccagatgaaagcagaccgccgaggtacaggtattccctg 503 Query: 293 cgcttggcgatgatggcggcgccagagaagca 324 ||||||||||||||||| |||||||||||||| Sbjct: 502 cgcttggcgatgatggcagcgccagagaagca 471
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 206 bits (104), Expect = 4e-50 Identities = 144/158 (91%) Strand = Plus / Minus Query: 25 catgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagggtgagggcgtg 84 |||||||| ||||| |||| || ||||| || ||||| |||||||||||||| ||||| Sbjct: 1329831 catgatgacgaggatccggacaaggacggccacgaagtcagtgaagagggtgagtgcgtg 1329772 Query: 85 cttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgcgtgtcgtacac 144 |||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| Sbjct: 1329771 cttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgcgtgtcatacac 1329712 Query: 145 catgtaccccaggaagatcaacaggccaaagtaaacct 182 |||||||||||||||||||||||||||||||||||||| Sbjct: 1329711 catgtaccccaggaagatcaacaggccaaagtaaacct 1329674 Score = 174 bits (88), Expect = 1e-40 Identities = 165/191 (86%) Strand = Plus / Minus Query: 179 acctcaaacatgaagctgccagaggagtggccaaagatggacgtggcaaactgcagccag 238 |||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||| Sbjct: 1329581 acctcaaacatgaagctgccggtggagtggccaaagatggatgcggcaaactgcagccag 1329522 Query: 239 agcaggatcgacaggccanacgagagcaggccaccgaggtacaggtactccctgcgcttg 298 |||||||| || |||||| | ||||||| ||||| ||||| ||||||||||| |||||| Sbjct: 1329521 agcaggatggagaggccagaagagagcaaaccaccaaggtagaggtactccctacgcttg 1329462 Query: 299 gcgatgatggcggcgccagagaagcacccaaaggcgatggcggttccgacaaaccctgtc 358 || | |||||| |||| || |||||||||||| || ||||| ||||| ||||| |||| Sbjct: 1329461 gcaacgatggcagcgcaagtgaagcacccaaatgcaatggcagttccaacaaatgctgtt 1329402 Query: 359 acgaggatgct 369 ||||| ||||| Sbjct: 1329401 acgagaatgct 1329391
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 206 bits (104), Expect = 4e-50 Identities = 144/158 (91%) Strand = Plus / Minus Query: 25 catgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagggtgagggcgtg 84 |||||||| ||||| |||| || ||||| || ||||| |||||||||||||| ||||| Sbjct: 11103 catgatgacgaggatccggacaaggacggccacgaagtcagtgaagagggtgagtgcgtg 11044 Query: 85 cttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgcgtgtcgtacac 144 |||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| Sbjct: 11043 cttgatgtagtccatgtcaccgtggtgagccctctcgatgatctcctgcgtgtcatacac 10984 Query: 145 catgtaccccaggaagatcaacaggccaaagtaaacct 182 |||||||||||||||||||||||||||||||||||||| Sbjct: 10983 catgtaccccaggaagatcaacaggccaaagtaaacct 10946 Score = 174 bits (88), Expect = 1e-40 Identities = 165/191 (86%) Strand = Plus / Minus Query: 179 acctcaaacatgaagctgccagaggagtggccaaagatggacgtggcaaactgcagccag 238 |||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||| Sbjct: 10853 acctcaaacatgaagctgccggtggagtggccaaagatggatgcggcaaactgcagccag 10794 Query: 239 agcaggatcgacaggccanacgagagcaggccaccgaggtacaggtactccctgcgcttg 298 |||||||| || |||||| | ||||||| ||||| ||||| ||||||||||| |||||| Sbjct: 10793 agcaggatggagaggccagaagagagcaaaccaccaaggtagaggtactccctacgcttg 10734 Query: 299 gcgatgatggcggcgccagagaagcacccaaaggcgatggcggttccgacaaaccctgtc 358 || | |||||| |||| || |||||||||||| || ||||| ||||| ||||| |||| Sbjct: 10733 gcaacgatggcagcgcaagtgaagcacccaaatgcaatggcagttccaacaaatgctgtt 10674 Query: 359 acgaggatgct 369 ||||| ||||| Sbjct: 10673 acgagaatgct 10663
>gb|BT018201.1| Zea mays clone EL01N0559D10.c mRNA sequence Length = 1127 Score = 182 bits (92), Expect = 6e-43 Identities = 126/138 (91%) Strand = Plus / Minus Query: 25 catgatgatgaggactnggacgagnacggcaacaaagtcggtgaagagggtgagggcgtg 84 |||||||| |||||| ||||||| ||||| || |||||||||||||||||||||||||| Sbjct: 711 catgatgacgaggacgcggacgaggacggccacgaagtcggtgaagagggtgagggcgtg 652 Query: 85 cttgatgtagtccatgtcgccatggtgcgccctctcgatgatctcctgcgtgtcgtacac 144 ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 651 cttgacgtggtccatgtcgccgcggtgcgccctctcgatgatctcctgcgtgtcgtacac 592 Query: 145 catgtaccccaggaagat 162 || ||| ||||||||||| Sbjct: 591 cacgtagcccaggaagat 574 Score = 103 bits (52), Expect = 4e-19 Identities = 156/191 (81%) Strand = Plus / Minus Query: 179 acctcaaacatgaagctgccagaggagtggccaaagatggacgtggcaaactgcagccag 238 ||||| |||||||||||| | ||||||||| |||||||| | ||| | |||||||||| Sbjct: 428 acctcgaacatgaagctggttgcggagtggccgaagatggaggcggcgagctgcagccag 369 Query: 239 agcaggatcgacaggccanacgagagcaggccaccgaggtacaggtactccctgcgcttg 298 |||||||| || || || |||||||||| || || ||||| ||||||||||||||| || Sbjct: 368 agcaggatggagagccccgacgagagcagcccgcccaggtagaggtactccctgcgcctg 309 Query: 299 gcgatgatggcggcgccagagaagcacccaaaggcgatggcggttccgacaaaccctgtc 358 || | ||||| ||||| ||||||||| | || |||||||| || || || ||| | ||| Sbjct: 308 gccaccatggccgcgccggagaagcacgcgaacgcgatggcagtccccacgaacgccgtc 249 Query: 359 acgaggatgct 369 || |||||||| Sbjct: 248 accaggatgct 238
>gb|AF453320.1| Brassica oleracea bax inhibitor-like protein (BI1) mRNA, complete cds Length = 1013 Score = 46.1 bits (23), Expect = 0.086 Identities = 70/86 (81%) Strand = Plus / Minus Query: 209 ccaaagatggacgtggcaaactgcagccagagcaggatcgacaggccanacgagagcagg 268 ||||||||||| | ||||||||| ||||| | || || |||| |||| | || ||||| Sbjct: 523 ccaaagatggaagaggcaaactgaagccacataagcatggacaagccagatgaaagcagt 464 Query: 269 ccaccgaggtacaggtactccctgcg 294 || |||||||| |||||||| ||||| Sbjct: 463 cctccgaggtagaggtactctctgcg 438 Score = 46.1 bits (23), Expect = 0.086 Identities = 44/51 (86%) Strand = Plus / Minus Query: 328 aaaggcgatggcggttccgacaaaccctgtcacgaggatgcttgggtcaaa 378 |||||| || || |||||||||||| | || | |||||||||||||||||| Sbjct: 404 aaaggctatcgcagttccgacaaacgcagtgatgaggatgcttgggtcaaa 354
>gb|AC183495.1| Brassica oleracea Contig A, complete sequence Length = 356505 Score = 46.1 bits (23), Expect = 0.086 Identities = 70/86 (81%) Strand = Plus / Plus Query: 209 ccaaagatggacgtggcaaactgcagccagagcaggatcgacaggccanacgagagcagg 268 ||||||||||| | ||||||||| ||||| | || || |||| |||| | || ||||| Sbjct: 250210 ccaaagatggaagaggcaaactgaagccacattagcattgacaagccagatgaaagcagt 250269 Query: 269 ccaccgaggtacaggtactccctgcg 294 || |||||||| |||||||| ||||| Sbjct: 250270 cctccgaggtagaggtactctctgcg 250295
>gb|AF390555.1| Brassica napus Bax inhibitor 1 (BI-1) mRNA, complete cds Length = 1010 Score = 46.1 bits (23), Expect = 0.086 Identities = 70/86 (81%) Strand = Plus / Minus Query: 209 ccaaagatggacgtggcaaactgcagccagagcaggatcgacaggccanacgagagcagg 268 ||||||||||| | ||||||||| ||||| | || || |||| |||| | || ||||| Sbjct: 546 ccaaagatggaagaggcaaactgaagccacataagcatggacaagccagatgaaagcagt 487 Query: 269 ccaccgaggtacaggtactccctgcg 294 || |||||||| |||||||| ||||| Sbjct: 486 cctccgaggtagaggtactctctgcg 461 Score = 46.1 bits (23), Expect = 0.086 Identities = 44/51 (86%) Strand = Plus / Minus Query: 328 aaaggcgatggcggttccgacaaaccctgtcacgaggatgcttgggtcaaa 378 |||||| || || |||||||||||| | || | |||||||||||||||||| Sbjct: 427 aaaggctatcgcagttccgacaaacgcagtgatgaggatgcttgggtcaaa 377
>gb|AY380778.1| Lycopersicon esculentum Bax inhibitor (BI-1) mRNA, complete cds Length = 1127 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 266 aggccaccgaggtacaggtactccctgcgc 295 ||||| |||||||||| ||||||||||||| Sbjct: 578 aggcccccgaggtacaagtactccctgcgc 549
>gb|AC011447.7| Homo sapiens chromosome 19 clone CTC-260E6, complete sequence Length = 165676 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 ccaggaagatcaacaggccaaa 174 |||||||||||||||||||||| Sbjct: 83723 ccaggaagatcaacaggccaaa 83744
>gb|AC008554.8| Homo sapiens chromosome 19 clone CTC-513N18, complete sequence Length = 166873 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 ccaggaagatcaacaggccaaa 174 |||||||||||||||||||||| Sbjct: 49580 ccaggaagatcaacaggccaaa 49559 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 caggaagatcaacaggccaaa 174 ||||||||||||||||||||| Sbjct: 44977 caggaagatcaacaggccaaa 44997
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cgtgcttgatgtagtccatgt 101 ||||||||||||||||||||| Sbjct: 3404523 cgtgcttgatgtagtccatgt 3404543
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cgtgcttgatgtagtccatgt 101 ||||||||||||||||||||| Sbjct: 442053 cgtgcttgatgtagtccatgt 442073
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cgtgcttgatgtagtccatgt 101 ||||||||||||||||||||| Sbjct: 251903 cgtgcttgatgtagtccatgt 251923
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cgtgcttgatgtagtccatgt 101 ||||||||||||||||||||| Sbjct: 245258 cgtgcttgatgtagtccatgt 245278
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gagggtgagggcgtgcttga 89 |||||||||||||||||||| Sbjct: 515474 gagggtgagggcgtgcttga 515493
>ref|XM_957333.1| Neurospora crassa OR74A hypothetical protein (NCU07910.1) partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gtcggtgaagagggtgaggg 80 |||||||||||||||||||| Sbjct: 696 gtcggtgaagagggtgaggg 677
>ref|XM_328615.1| Neurospora crassa OR74A hypothetical protein (NCU07910.1) partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gtcggtgaagagggtgaggg 80 |||||||||||||||||||| Sbjct: 696 gtcggtgaagagggtgaggg 677
>ref|XM_570465.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND01920) partial mRNA Length = 3079 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gagggtgagggcgtgcttga 89 |||||||||||||||||||| Sbjct: 2110 gagggtgagggcgtgcttga 2091
>gb|AC073530.18| Homo sapiens 12 BAC RP11-123O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156390 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tgaagctgccagaggagtgg 208 |||||||||||||||||||| Sbjct: 133533 tgaagctgccagaggagtgg 133552
>gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosome 19, complete sequence Length = 175796 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 caaacatgaagctgccagag 202 |||||||||||||||||||| Sbjct: 23170 caaacatgaagctgccagag 23151
>gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, RP23-49P8 Complete Sequence, complete sequence Length = 220143 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 caaacatgaagctgccagag 202 |||||||||||||||||||| Sbjct: 206772 caaacatgaagctgccagag 206791
>gb|DQ397554.1| Cenarchaeum symbiosum clone C08F03, complete sequence Length = 36219 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ccctctcgatgatctcctgc 133 |||||||||||||||||||| Sbjct: 28492 ccctctcgatgatctcctgc 28473
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ctccctgcgcttggcgatga 305 |||||||||||||||||||| Sbjct: 34065651 ctccctgcgcttggcgatga 34065670
>gb|AC026359.25| Homo sapiens 3 BAC RP11-462A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78848 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 ttgggtcaaagtctatggca 388 |||||||||||||||||||| Sbjct: 45444 ttgggtcaaagtctatggca 45425
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034E02 Length = 165497 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ctccctgcgcttggcgatga 305 |||||||||||||||||||| Sbjct: 62129 ctccctgcgcttggcgatga 62148
>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8, complete sequence Length = 234864 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 acatgaagctgccagaggag 205 |||||||||||||||||||| Sbjct: 64510 acatgaagctgccagaggag 64529
>emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 in linkage group 6, complete sequence Length = 187638 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 acatgaagctgccagaggag 205 |||||||||||||||||||| Sbjct: 19571 acatgaagctgccagaggag 19590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,489,190 Number of Sequences: 3902068 Number of extensions: 2489190 Number of successful extensions: 47502 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47354 Number of HSP's gapped (non-prelim): 148 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)