Clone Name | rbasdb02 |
---|---|
Clone Library Name | barley_pub |
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 36.2 bits (82), Expect = 0.094 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 3/106 (2%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPY 398 PPPP V + ++ PQ A G + P PQ+ P+ PP PP Sbjct: 427 PPPPPVTT--FNTLTPQMTAAT-----GQPAVPLPQNTQAPSQATNV----PVAPPPPPA 475 Query: 397 YHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAI---PANAGAPS 269 G +Q P P+ I L S A P P + + P + GAP+ Sbjct: 476 SLGQSQIPQSAPSAPIPPTLPSTTSAAPPPPPAFLTQQPQSGGAPA 521
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 34.7 bits (78), Expect = 0.27 Identities = 33/111 (29%), Positives = 40/111 (36%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PP SG IPPPP + P+ +G S PG Sbjct: 622 PPLSGDATIPPPPPL---------PEGVGI-----PSPSSLPG-------------GTAI 654 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 P PPLP G A+ PP P P + P S +P P +P AG P Sbjct: 655 PPPPPLP----GSARIPP--PPPPL------PGSAGIPPPPPPLPGEAGMP 693 Score = 31.6 bits (70), Expect = 2.3 Identities = 31/118 (26%), Positives = 34/118 (28%), Gaps = 8/118 (6%) Frame = -2 Query: 601 PGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYP 422 PG IPPPPA P P G P P P Sbjct: 580 PGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGTAISPPPP--------LSGDATIP 631 Query: 421 MRPPL--------PPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 PPL P GG PP P P S +P P +P +AG P Sbjct: 632 PPPPLPEGVGIPSPSSLPGGTAIPPPPPL---------PGSARIPPPPPPLPGSAGIP 680
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 33.5 bits (75), Expect = 0.61 Identities = 28/107 (26%), Positives = 35/107 (32%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPY 398 PPPP+ P P G G G+ P P PP PP Sbjct: 276 PPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAA-----------PPPPPP 324 Query: 397 YHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAAT 257 G PP P R+Y P A+P+ + P PS A + Sbjct: 325 SRPGVVVPPPPPN-----RMYPPPPPALPSSAPSGPPPPPPPSMAGS 366
>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)| Length = 296 Score = 33.1 bits (74), Expect = 0.80 Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPY 398 PPPPA Q P P G +R +G GPQ YP PP P Sbjct: 143 PPPPAGPQPRPPQGPPPPAGPHLRPTQGPPPTGGPQQ------------RYPQSPPPP-- 188 Query: 397 YHGGAQ-YPPXLPTP 356 GG Q PP P P Sbjct: 189 --GGPQPRPPQGPPP 201 Score = 30.8 bits (68), Expect = 4.0 Identities = 27/84 (32%), Positives = 29/84 (34%), Gaps = 1/84 (1%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PP +G PPPP Q P P G R +G GPQ Sbjct: 22 PPVNGSQQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQ--------------- 66 Query: 424 PMRPPLPPYYHGGAQ-YPPXLPTP 356 RPP P GG Q PP P P Sbjct: 67 -PRPPQGPPPPGGPQPRPPQGPPP 89
>YL37_CAEEL (P34428) Hypothetical protein F44B9.7| Length = 466 Score = 33.1 bits (74), Expect = 0.80 Identities = 32/107 (29%), Positives = 37/107 (34%), Gaps = 4/107 (3%) Frame = -2 Query: 604 PPGSGYFNIPP----PPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXX 437 PP S + PP PP + Q M P MDP D S P P H Sbjct: 86 PPSSHPYGYPPMHGMPPGMPQGMPPMMDPNM---------PDFSSP-PMHHPTTSLLAQH 135 Query: 436 XXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSA 296 P+ PP PP + L PT + P HA PT A Sbjct: 136 LSSAPL-PPAPPQQQ--SHLSQLLQQPTTYSTATNP--HAAPTQTIA 177
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 33.1 bits (74), Expect = 0.80 Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDP----QRMGAVVRSQEGDGSKPGPQHXXXXXXXXXX 437 P G G PPPA + P++ P + + S G G++P P H Sbjct: 279 PVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQG 338 Query: 436 XXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAA 260 G P P P A P LP PAS + P P P ++ + S+AA Sbjct: 339 MGGLPPGPEKGPTL---APSPHSLP----------PASSSAPAPPMRFPYSSSSSSSAA 384
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 33.1 bits (74), Expect = 0.80 Identities = 32/117 (27%), Positives = 37/117 (31%), Gaps = 5/117 (4%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVR-----SQEGDGSKPGPQHXXXXXXXXX 440 PP + + PPPP R P P R S+ G G+ P P + Sbjct: 290 PPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGAPPPPPNRM------- 342 Query: 439 XXXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPS 269 YP PPLP PP P P P P P P G PS Sbjct: 343 ----YP--PPLPALPSSAPSGPPPPPPPLSVSGSVAPPPPPPPPPPPGPPPPPGLPS 393 Score = 29.6 bits (65), Expect = 8.8 Identities = 25/96 (26%), Positives = 31/96 (32%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPY 398 PPPP+ P P G G G+ P P PP PP Sbjct: 279 PPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAA-----------PPPPPP 327 Query: 397 YHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIP 290 G PP P R+Y P A+P+ + P Sbjct: 328 SRPGVGAPPPPPN-----RMYPPPLPALPSSAPSGP 358
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 33.1 bits (74), Expect = 0.80 Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDP----QRMGAVVRSQEGDGSKPGPQHXXXXXXXXXX 437 P G G PPPA + P++ P + + S G G++P P H Sbjct: 278 PVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQG 337 Query: 436 XXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAA 260 G P P P A P LP PAS + P P P ++ + S+AA Sbjct: 338 MGGLPPGPEKGPTL---APSPHSLP----------PASSSAPAPPMRFPYSSSSSSSAA 383
>ENA_DROME (Q8T4F7) Protein enabled| Length = 834 Score = 32.7 bits (73), Expect = 1.0 Identities = 40/131 (30%), Positives = 44/131 (33%), Gaps = 18/131 (13%) Frame = -2 Query: 601 PGSGYFNIPPPPAVDQR--------MYPSMDP---QRMGAV----VRSQEGDGSKPGPQH 467 PG GY P PP Q M P M+P Q+ G V + SQ G G P P Sbjct: 499 PGPGYGGPPVPPPQQQAENPYGQVPMPPPMNPSQQQQPGQVPLNRMSSQGGPGGPPAPAP 558 Query: 466 XXXXXXXXXXXXGYPMRPPLPPYYHG--GAQYPPXLPTPTIWWRLYGPASHAVPTPV-SA 296 PP PP + G G PP P PA P P A Sbjct: 559 -----------------PPPPPSFGGAAGGGPPPPAPPQMFNGAPPPPAMGGGPPPAPPA 601 Query: 295 IPANAGAPSTA 263 PA G P A Sbjct: 602 PPAMGGGPPPA 612
>BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,| chloroplast precursor (BCCP) Length = 262 Score = 32.3 bits (72), Expect = 1.4 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = -2 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAATREFI 245 P PP P + PP LP P + PAS PT A P AP+ + + + Sbjct: 132 PQPPPAPQPSVVYSPPPPALPPPPV------PASTPAPTLARATPTPTSAPAVKSAKSSL 185 Query: 244 P 242 P Sbjct: 186 P 186
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 32.3 bits (72), Expect = 1.4 Identities = 31/117 (26%), Positives = 34/117 (29%), Gaps = 6/117 (5%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 P SG + PP Q YP P G Q G P Q Y Sbjct: 110 PGQSGQY---PPQQPGQPGYPPQQPGAPGQYPPQQGQPGQYPPQQPGQPGQYPPQQQGQY 166 Query: 424 PMRPP-----LPPYYHGG-AQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 P + P PP G YPP + P VP P A P G P Sbjct: 167 PPQQPGQPGAYPPQQPGQPGAYPPQQGVQNTLAKTGAPGQPGVPPPQGAYPGQPGVP 223
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 31.6 bits (70), Expect = 2.3 Identities = 26/80 (32%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQR--MYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXX 431 PPG G PPPP + M P P+ A G G P P Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSA------GPGMYPPPP------------- 367 Query: 430 GYPMRPPLPPYYHGGAQYPP 371 P RPP PP HG PP Sbjct: 368 --PSRPPAPPSGHGMIPPPP 385 Score = 30.8 bits (68), Expect = 4.0 Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 12/94 (12%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQR--------MYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXX 449 PP SG + PPPP + M P P R G G G P P Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG-----PPGMGGMPPPP------- 337 Query: 448 XXXXXXGYP--MRPPLPPYY--HGGAQYPPXLPT 359 YP M PP PP Y G YPP P+ Sbjct: 338 --PPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 369
>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)| Length = 1097 Score = 31.6 bits (70), Expect = 2.3 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Frame = -2 Query: 574 PPPAVDQRMYPSMDPQR-----MGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPP 410 PPP ++R P R + RS+ G ++P PQH YP +P Sbjct: 1007 PPPPPNRRPPSPRRPHRPRRNSLDGGSRSRGGGSTQPEPQHLRPQKHNS-----YPQQPQ 1061 Query: 409 LPPYYHGGAQYPPXLPTP 356 P G +YPP P Sbjct: 1062 PYPAQRPGPRYPPYTTPP 1079
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 31.6 bits (70), Expect = 2.3 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 15/97 (15%) Frame = -2 Query: 601 PGSGYFNIPPPPAVDQRMYPSMDPQR---------------MGAVVRSQEGDGSKPGPQH 467 PG G P P ++ P P R + RS+ G ++P PQH Sbjct: 991 PGMGSGEAPAPQPPEEVTVPPAPPNRRPPSPRRPHRSRRNSLDGGSRSRGGGSTQPEPQH 1050 Query: 466 XXXXXXXXXXXXGYPMRPPLPPYYHGGAQYPPXLPTP 356 YP +P P G +YPP P Sbjct: 1051 LRPQKHNG-----YPQQPQPSPAQRPGPRYPPYTTPP 1082
>TEAD3_CHICK (Q90701) Transcriptional enhancer factor TEF-5 (TEA domain family| member 3) (TEAD-3) (Cardiac-enriched TEA domain transcription factor 1) (DTEF-1) Length = 433 Score = 31.6 bits (70), Expect = 2.3 Identities = 25/90 (27%), Positives = 35/90 (38%) Frame = -2 Query: 580 IPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPP 401 + PPP + Q ++ S P+ + Q G P YP++PP+PP Sbjct: 144 LSPPPPLPQAVF-SAAPRFWSGPIPGQPGPSQDIKP----------FAQPAYPIQPPMPP 192 Query: 400 YYHGGAQYPPXLPTPTIWWRLYGPASHAVP 311 A Y P P P PA+ AVP Sbjct: 193 SL---ASYEPLAPLP--------PAASAVP 211
>CDX4_HUMAN (O14627) Homeobox protein CDX-4 (Caudal-type homeobox protein 4)| Length = 284 Score = 31.6 bits (70), Expect = 2.3 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Frame = -2 Query: 550 MYPS--MDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPYYHG---- 389 MYP M P G G G P P GYP P + P++ Sbjct: 13 MYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLGVW 72 Query: 388 GAQYPPXLPTPTIWWRLY-GPASHAVPTPVSAIPANAGA 275 G+ Y P P W +Y GP+S PV+ + ++ A Sbjct: 73 GSPYSP----PREDWSVYPGPSSTMGTVPVNDVTSSPAA 107
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 31.2 bits (69), Expect = 3.0 Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Frame = -2 Query: 604 PPGSGYFNIP-PPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXG 428 PPGSG P PPP + P M G S G P P H G Sbjct: 326 PPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPG-PMPPHGMRGPPPLMPPHG 384 Query: 427 YPMRPPLPPYYHGGAQYPPXLPTP 356 Y P PPY + PP PTP Sbjct: 385 YTGPPRPPPYGYQRGPLPPPRPTP 408
>HES1_HUMAN (Q14469) Transcription factor HES-1 (Hairy and enhancer of split 1)| (Hairy-like) (HHL) (Hairy homolog) Length = 280 Score = 31.2 bits (69), Expect = 3.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = -2 Query: 415 PPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 PP PP GG Q+ P P P + VP P A P GAP Sbjct: 166 PPPPPPGPGGPQHAPFAPPPPL-----------VPIPGGAAPPPGGAP 202
>HES1_BOVIN (Q3ZBG4) Transcription factor HES-1 (Hairy and enhancer of split 1)| Length = 280 Score = 31.2 bits (69), Expect = 3.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = -2 Query: 415 PPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 PP PP GG Q+ P P P + VP P A P GAP Sbjct: 166 PPPPPPGPGGPQHAPFAPPPPL-----------VPIPGGAAPPPGGAP 202
>7LESS_DROVI (P20806) Protein sevenless (EC 2.7.10.1)| Length = 2594 Score = 31.2 bits (69), Expect = 3.0 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 12/84 (14%) Frame = -3 Query: 675 LLYLSSRAATSLSHLGWRDSNKW--------HHQ--DQATSTFHHRQRWI--SGCTLQWT 532 LLY S AA S R+ W H Q D+ T++ R R S + QWT Sbjct: 588 LLYTSEPAAISDFTFSQREQRLWLLDELGQLHSQLLDETTTSAARRLRLELPSNGSSQWT 647 Query: 531 PREWAL*SGRRRAMAASQGHSTPG 460 PR+ +L +RR A+Q +S+ G Sbjct: 648 PRKLSLDWLQRRLYIAAQANSSDG 671
>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type| coiled-coil domain protein 1) Length = 970 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/58 (36%), Positives = 23/58 (39%) Frame = -2 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAATRE 251 P PPLP PP LPTP PAS PV I + P+ AA E Sbjct: 551 PRSPPLPAVIRNAPSRPPSLPTPR-------PASQPRKAPV--ISSTPKLPALAAREE 599
>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog| Length = 242 Score = 31.2 bits (69), Expect = 3.0 Identities = 35/118 (29%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PP S + P V MYPSM P G PGP Sbjct: 54 PPSSAAPSTVPFGPVPTGMYPSMPP------------TGPPPGPPG-------------- 87 Query: 424 PMRPPLPPYYHGGAQYP-PXLPTPTIWWRLYGPAS-HAVPT-PVSAIPANAGAPSTAA 260 P PP P G YP P +P P GP +A P P+ +P GAP+ A Sbjct: 88 PFPPPGPSCPPPGVPYPAPAVPGP-------GPTGPYATPNMPMPELPRPYGAPTDPA 138
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 30.8 bits (68), Expect = 4.0 Identities = 24/75 (32%), Positives = 31/75 (41%) Frame = -2 Query: 580 IPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPP 401 +PPPPA D YP++ P + SQ G+ P P P PP PP Sbjct: 495 LPPPPAAD---YPTLPPPPL-----SQPTRGAPPPPPPP-------------PPGPPPPP 533 Query: 400 YYHGGAQYPPXLPTP 356 + GA P +P P Sbjct: 534 F--TGADGQPAVPPP 546
>DAAM1_MOUSE (Q8BPM0) Disheveled-associated activator of morphogenesis 1| Length = 1071 Score = 30.8 bits (68), Expect = 4.0 Identities = 18/48 (37%), Positives = 20/48 (41%) Frame = -2 Query: 415 PPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 PP PP GGA PP P P GP P P+ + GAP Sbjct: 551 PPPPPLLSGGALPPPPPPLPA-----GGPPPPPGPPPLGGVLPPPGAP 593
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 30.8 bits (68), Expect = 4.0 Identities = 25/82 (30%), Positives = 27/82 (32%), Gaps = 4/82 (4%) Frame = -2 Query: 604 PPGSGYFNI----PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXX 437 PP G N+ PPP YP M P G G G PG Q Sbjct: 602 PPNQGMNNMATPPPPPQGAAGGGYP-MPPHMHGGY--KMGGPGQSPGAQGYPPQQPQQYP 658 Query: 436 XXGYPMRPPLPPYYHGGAQYPP 371 YP RP PP + PP Sbjct: 659 PGNYPPRPQYPPGAYATGPPPP 680
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 30.8 bits (68), Expect = 4.0 Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDP----QRMGAVVRSQEGDGSKPGPQHXXXXXXXXXX 437 P G+G PPPA + P++ P + + S G G++P P H Sbjct: 280 PVGAGNLPSAPPPATFPHVTPNLPPPPALRPLNNASASPPGMGAQPIPGHLPSPHAMGQG 339 Query: 436 XXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAA 260 G P P P A P LP PAS + P P P ++ + S+ A Sbjct: 340 MSGLPPGPEKGPTL---APSPHPLP----------PASSSAPGPPMRYPYSSCSSSSVA 385
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 30.8 bits (68), Expect = 4.0 Identities = 27/84 (32%), Positives = 29/84 (34%), Gaps = 1/84 (1%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PP +G PPPP Q P P G R +G GPQ Sbjct: 43 PPVNGSQQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPPGGPQ--------------- 87 Query: 424 PMRPPLPPYYHGGAQ-YPPXLPTP 356 RPP P GG Q PP P P Sbjct: 88 -PRPPQGPPPPGGPQPRPPQGPPP 110
>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) (Verprolin homology domain-containing protein 2) Length = 498 Score = 30.8 bits (68), Expect = 4.0 Identities = 24/83 (28%), Positives = 31/83 (37%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PP + PPPP YP++ P + SQ G+ P P Sbjct: 356 PPHPDFAAPPPPPPPPAADYPTLPPPPL-----SQPTGGAPPPPPPPP------------ 398 Query: 424 PMRPPLPPYYHGGAQYPPXLPTP 356 P PP PP+ GA P +P P Sbjct: 399 PPGPPPPPF--TGADGQPAIPPP 419
>FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related protein FKHL8)| (Forkhead-related transcription factor 4) (FREAC-4) Length = 465 Score = 30.8 bits (68), Expect = 4.0 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = -2 Query: 427 YPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAA 260 +P PP PP HG A L +R + P A+P P+ A A AG P +A Sbjct: 305 HPHSPPPPPPPHGAAA---ELARTAFGYRPH-PLGAALPGPLPASAAKAGGPGASA 356
>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)| Length = 501 Score = 30.4 bits (67), Expect = 5.2 Identities = 25/81 (30%), Positives = 26/81 (32%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PPG G PPPPA R G + G G P P Sbjct: 360 PPGRGGPPPPPPPATG----------RSGPLPPPPPGAGGPPMPP--------------- 394 Query: 424 PMRPPLPPYYHGGAQYPPXLP 362 P PP PP G PP LP Sbjct: 395 PPPPPPPPPSSGNGPAPPPLP 415
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 30.4 bits (67), Expect = 5.2 Identities = 25/96 (26%), Positives = 31/96 (32%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPY 398 PPPP+ P P G G G+ P P PP PP Sbjct: 276 PPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAA-----------PPPPPP 324 Query: 397 YHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIP 290 G PP P R+Y P A+P+ + P Sbjct: 325 SRPGVVVPPPPPN-----RMYPPPPPALPSSAPSGP 355
>DAAM1_HUMAN (Q9Y4D1) Disheveled-associated activator of morphogenesis 1| Length = 1078 Score = 30.4 bits (67), Expect = 5.2 Identities = 20/55 (36%), Positives = 23/55 (41%) Frame = -2 Query: 415 PPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAATRE 251 PP PP GG PP P P GP P P+ AI GAP A ++ Sbjct: 551 PPPPPPLPGGMLPPPPPPLPP-----GGPPPPPGPPPLGAIMPPPGAPMGLALKK 600
>PRA_MYCTU (O53426) Proline-rich antigen homolog| Length = 240 Score = 30.4 bits (67), Expect = 5.2 Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 3/102 (2%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PPG Y PPPP PS + A G P P GY Sbjct: 6 PPGGSYPPPPPPPG------PSGGHEPPPAAPPGGSGYAPPPPP----------SSGSGY 49 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTIWWRL---YGPASHAVPT 308 P PP P GG YPP P P+ GPA +PT Sbjct: 50 PPPPPPP----GGGAYPP--PPPSAGGYAPPPPGPAIRTMPT 85
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 30.4 bits (67), Expect = 5.2 Identities = 34/117 (29%), Positives = 39/117 (33%), Gaps = 1/117 (0%) Frame = -2 Query: 604 PPGS-GYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXG 428 PPG GY IP P R P P R G EG PGP Sbjct: 1378 PPGPPGYPGIPGPKGESIRGPPG-PPGRQGPPGIGYEGRQGPPGPP-------------- 1422 Query: 427 YPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAAT 257 PP PP + G + +P P P P P A+ A+AG AT Sbjct: 1423 ---GPPGPPSFPGPHRQTVSVPGP--------PGPPGPPGPPGAMGASAGQVRIWAT 1468
>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)| Length = 520 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/83 (31%), Positives = 26/83 (31%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PPG G PPPPA R G G G P P Sbjct: 378 PPGRGGPPPPPPPATG----------RSGPPPPPLPGAGGPPAPPPP------------- 414 Query: 424 PMRPPLPPYYHGGAQYPPXLPTP 356 P PP PP G PP PTP Sbjct: 415 PPPPPPPPCPGSGPAPPPLPPTP 437
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 30.4 bits (67), Expect = 5.2 Identities = 29/113 (25%), Positives = 36/113 (31%), Gaps = 13/113 (11%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPY 398 PPPP ++ PS + S+PGP PPLPP Sbjct: 284 PPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGP-------------------PPLPPS 324 Query: 397 YHGGAQYP-------------PXLPTPTIWWRLYGPASHAVPTPVSAIPANAG 278 G + P P LP+P L P S P PV P +G Sbjct: 325 SSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSG 377
>ANX11_MOUSE (P97384) Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50)| (CAP-50) Length = 503 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 415 PPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 PP+PP GG PP P + +Y P P + + PA GAP Sbjct: 82 PPVPP---GGFGQPPPAQQPVPPYGMYPPPGGNPPPGMPSYPAYPGAP 126
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 30.0 bits (66), Expect = 6.7 Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 20/134 (14%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQE----------------GDGSKPGP 473 PPG +P P PS P R G+ V + E GD +PGP Sbjct: 477 PPGESVQGLPGPRGPPGLPGPSGPPGRPGSSVSTSETFVSGPPGPPGPPGPKGDQGEPGP 536 Query: 472 QHXXXXXXXXXXXXGYPMRPPLPPY-YHGGA---QYPPXLPTPTIWWRLYGPASHAVPTP 305 + G P P LP + HGG Q PP P P GP A Sbjct: 537 R----------GFTGEPGEPGLPGFSSHGGTVTMQGPPGPPGPP------GPKGDA---- 576 Query: 304 VSAIPANAGAPSTA 263 +P G P T+ Sbjct: 577 --GVPGAPGIPGTS 588
>HXB3A_BRARE (O42368) Homeobox protein Hox-B3a (Hox-B3)| Length = 417 Score = 30.0 bits (66), Expect = 6.7 Identities = 22/75 (29%), Positives = 29/75 (38%) Frame = -2 Query: 595 SGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMR 416 +G+ P PA + D QR ++S G + P PQH MR Sbjct: 22 NGFGYDAPAPAFQNSAHLEGDYQRSACSLQSL-GTSAPPQPQHAKTKELNGSC-----MR 75 Query: 415 PPLPPYYHGGAQYPP 371 P LPP +H Q P Sbjct: 76 PSLPPEHHPPPQVSP 90
>PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)| Length = 249 Score = 30.0 bits (66), Expect = 6.7 Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 3/107 (2%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVV---RSQEGDGSKPGPQHXXXXXXXXXXX 434 P GS PPPP PS P +G+ + GS P P Sbjct: 7 PSGSNPTPAPPPPGSSGGYEPSFAPSELGSAYPPPTAPPVGGSYPPPP---------PPG 57 Query: 433 XGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAI 293 YP PP PP G YPP P+ ++A P P AI Sbjct: 58 GSYP--PPPPP----GGSYPPPPPS---------TGAYAPPPPGPAI 89
>FOR3_SCHPO (O94532) Formin-3| Length = 1461 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Frame = -2 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTI---WWRLYGPASHAVPTP 305 P PP PP G PP P P + R Y PA A P P Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>ANX11_HUMAN (P50995) Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50)| (CAP-50) (56 kDa autoantigen) Length = 505 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -2 Query: 415 PPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 PP+PP GG PP P + +Y P P+ + + P GAP Sbjct: 83 PPVPP---GGFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAP 127
>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) Length = 497 Score = 30.0 bits (66), Expect = 6.7 Identities = 30/112 (26%), Positives = 35/112 (31%) Frame = -2 Query: 604 PPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGY 425 PP + PPPP YP P SQ G+ P P Sbjct: 354 PPHPDFAAPPPPPPPPAADYPMPPPP------LSQPSGGAPPPPPP-------------- 393 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPS 269 P P PP GA P P P P P S++PA + A S Sbjct: 394 PPPPGPPPLPFSGADGQPAAPPP--------PPPSEATKPKSSLPAVSDARS 437
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 29.6 bits (65), Expect = 8.8 Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Frame = -2 Query: 577 PPPPAVDQRMYPS-------MDPQRMGA------VVRSQEGDGSKPGPQHXXXXXXXXXX 437 PPPP ++Q +P MD Q +G+ V R +G G P P Sbjct: 427 PPPPPMNQGPHPPGHHGPPPMD-QYLGSTPVGSGVYRLHQGKGMMPPPPMG--------- 476 Query: 436 XXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 M PP PP G PP P P W+ P P S++ ++ P Sbjct: 477 -----MMPPPPPPPSGQPPPPPSGPLPP--WQQQQQQPPPPPPPSSSMASSTPLP 524
>HUNB_DROVI (P13361) Protein hunchback| Length = 816 Score = 29.6 bits (65), Expect = 8.8 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Frame = -2 Query: 577 PPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPP- 401 P P DQ D +++ Q+ QH P+ PP P Sbjct: 101 PSPSNNDQNSLQHFDATLQQQLLQQQQYQQHFQAAQHQQQQHHHLALGGFNPLTPPGLPN 160 Query: 400 ---YYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSA 296 +Y+GG P PTPT A PT V+A Sbjct: 161 PMQHYYGGNMRPSPQPTPT-----------AAPTAVAA 187
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.6 bits (65), Expect = 8.8 Identities = 31/116 (26%), Positives = 40/116 (34%) Frame = -2 Query: 607 APPGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXG 428 A GS +++ P A QR P PQ++ A + S + G G Sbjct: 1152 ATAGSMTYSLVAPKA--QRPSPKA-PQKVKAAIASIPVGSFESGTTGRPGSTPRQSSDSG 1208 Query: 427 YPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAA 260 P P G PP P PT W +S P P P G P TA+ Sbjct: 1209 VAREPAAPESELEGQPTPPAPPPPTETWPPTARSSPPPPLPAEERPGTKG-PETAS 1263
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 29.6 bits (65), Expect = 8.8 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Frame = -2 Query: 415 PPLPPYYHGGAQYP----PXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPS 269 PP PP GG P P P P PA+ V P + PA GAP+ Sbjct: 304 PPAPPAAPGGPGAPAPGAPGAPAPG------APAAPGVTAPAAPAPAAPGAPA 350
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 29.6 bits (65), Expect = 8.8 Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Frame = -2 Query: 577 PPPPAVDQRMYPS-------MDPQRMGA------VVRSQEGDGSKPGPQHXXXXXXXXXX 437 PPPP ++Q +P MD Q +G+ V R +G G P P Sbjct: 427 PPPPPMNQGPHPPGHHGPPPMD-QYLGSTPVGSGVYRLHQGKGMMPPPPMG--------- 476 Query: 436 XXGYPMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 M PP PP G PP P P W+ P P S++ ++ P Sbjct: 477 -----MMPPPPPPPSGQPPPPPSGPLPP--WQQQQQQPPPPPPPSSSMASSTPLP 524
>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)| Length = 1206 Score = 29.6 bits (65), Expect = 8.8 Identities = 24/94 (25%), Positives = 36/94 (38%) Frame = -2 Query: 553 RMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPYYHGGAQYP 374 ++ PS D + + A +++EG S Q P+ PP PP G P Sbjct: 614 QLSPSKDSKDIHAPFQTREGTSSS-SQQKISPPAPPTPPPLPPPLIPPPPPLPPGLGPLP 672 Query: 373 PXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 P P P + P P P + +P + G P Sbjct: 673 PAPPIPPVC--PVSPPPPPPPPPPTPVPPSDGPP 704
>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)| Length = 267 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/57 (29%), Positives = 21/57 (36%) Frame = -2 Query: 424 PMRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAATR 254 P P PP Y + P PTP + P + PTP P P AT+ Sbjct: 190 PTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPTPKPPATK 246
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)| (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 29.6 bits (65), Expect = 8.8 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Frame = -2 Query: 415 PPLPP-YYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTAATREFIP 242 PP+PP Y A P L P PAS A+P +P GAP R +P Sbjct: 826 PPVPPPQYFSPAVILPSLAAPL------PPASPALPLQAVKLPHPPGAPLAMPCRTIVP 878
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 29.6 bits (65), Expect = 8.8 Identities = 32/113 (28%), Positives = 36/113 (31%) Frame = -2 Query: 601 PGSGYFNIPPPPAVDQRMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYP 422 PG G FN PP PA PS P + G P P Sbjct: 33 PG-GIFNCPPSPAPPSPAPPSPAPPSPAPPSPAPPSPG-PPSP----------------- 73 Query: 421 MRPPLPPYYHGGAQYPPXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAPSTA 263 PP PP + PP P+ P S A P+P PA PS A Sbjct: 74 -APPSPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPPSPA 125
>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)| Length = 1468 Score = 29.6 bits (65), Expect = 8.8 Identities = 24/94 (25%), Positives = 36/94 (38%) Frame = -2 Query: 553 RMYPSMDPQRMGAVVRSQEGDGSKPGPQHXXXXXXXXXXXXGYPMRPPLPPYYHGGAQYP 374 ++ PS D + + A +++EG S Q P+ PP PP G P Sbjct: 840 QLSPSKDSKDIHAPFQTREGTSSS-SQQKISPPAPPTPPPLPPPLIPPPPPLPPGLGPLP 898 Query: 373 PXLPTPTIWWRLYGPASHAVPTPVSAIPANAGAP 272 P P P + P P P + +P + G P Sbjct: 899 PAPPIPPVC--PVSPPPPPPPPPPTPVPPSDGPP 930 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,656,326 Number of Sequences: 219361 Number of extensions: 1845643 Number of successful extensions: 6480 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 5578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6290 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)