ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdb01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477385.1| Oryza sativa (japonica cultivar-group), mRNA 394 e-106
2gb|AY110131.1| Zea mays CL15186_1 mRNA sequence 135 2e-28
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
4dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
6ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transf... 74 7e-10
7ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transf... 74 7e-10
8gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com... 74 7e-10
9gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com... 74 7e-10
10emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BA... 64 7e-07
11dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 46 0.16
12ref|XM_418744.1| PREDICTED: Gallus gallus similar to KIAA1092 pr... 44 0.64
13ref|NM_001030808.1| Gallus gallus phosphatidylinositol glycan, c... 42 2.5
14emb|AJ851372.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.5
15gb|AC132307.5| Mus musculus BAC clone RP24-291H9 from chromosome... 40 10.0
16gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosom... 40 10.0
17emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chro... 40 10.0
18emb|AL031721.1|HS399E4 Human DNA sequence from clone LA16c-399E4... 40 10.0
19gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8 40 10.0
20gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, com... 40 10.0
21gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 40 10.0
22dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 10.0
23gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 10.0
24gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 10.0
25gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4,... 40 10.0
26ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 p... 40 10.0
27gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complet... 40 10.0
28gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, com... 40 10.0
29dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, ... 40 10.0
30emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 10.0
31gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, comple... 40 10.0
32dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 10.0
33emb|AL772212.6| Mouse DNA sequence from clone RP23-80B16 on chro... 40 10.0
34dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 10.0 
>ref|XM_477385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1317

 Score =  394 bits (199), Expect = e-106
 Identities = 325/367 (88%)
 Strand = Plus / Minus

                                                                        
Query: 363  tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
            |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 1194 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 1135

                                                                        
Query: 423  gagttttttcatccggcgatgcataatttggggatctataccaggcagtatgtcgatagc 482
             || |||||||| ||  ||||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 1134 aagctttttcattcgaagatgcataacttggggatctatgccaggaagcatatcgatagc 1075

                                                                        
Query: 483  ttgcctgacagcccgtaccatatcttctggatctggttctgcaagtactatcatgtcatc 542
             | ||||||||| |||||||||||||| ||| |||||||||||||||||| ||| |||||
Sbjct: 1074 cttcctgacagctcgtaccatatcttcaggagctggttctgcaagtactaccatatcatc 1015

                                                                        
Query: 543  tggtagaacctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgc 602
            ||||| |||||||||||| || ||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 1014 tggtaaaacctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgc 955

                                                                        
Query: 603  tgcttccagaatggctatgcaaaatgcttctgtaagcgaactgttaagaaatatatgacc 662
            |||||||| ||||||||| ||||| || ||||||||||||||||| | ||| ||||||||
Sbjct: 954  tgcttccaaaatggctatacaaaaggcctctgtaagcgaactgttcaaaaaaatatgacc 895

                                                                        
Query: 663  agatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctcaactctatc 722
            |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 894  agatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctcaactctatc 835

                   
Query: 723  ctgaagg 729
            |||||||
Sbjct: 834  ctgaagg 828



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 208  atatccgggacttcttcaataccttcag 235
            ||||| ||||| ||||||||||||||||
Sbjct: 1294 atatctgggacctcttcaataccttcag 1267
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>gb|AY110131.1| Zea mays CL15186_1 mRNA sequence
          Length = 822

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Plus

                                                                       
Query: 196 tgtagtgaccctatatccgggacttcttcaataccttcagcaggctgcaggaattctaga 255
           ||||||| ||||||||| |||||||||||||||||| |||||||||| || ||||||| |
Sbjct: 599 tgtagtggccctatatctgggacttcttcaatacctacagcaggctgtagaaattctaaa 658

                                                                       
Query: 256 aggcaccacgcaaggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagct 315
           |||| |||    |||||||| ||||||||||| ||||||||||| || || ||||||| |
Sbjct: 659 aggcgccatagtaggtaattgatgatcataactaggcaaaacagttttccagcccaagat 718

                                                                       
Query: 316 ccacatgtgaggtatcggggaagatgatctagcaaattagtgtttgatgactgcattgca 375
           ||||| || || || || |||||  ||||||| ||||| ||  |||  || | |||||||
Sbjct: 719 ccacaagtaagataccgaggaaggcgatctagtaaatttgttgttggagattccattgca 778

                                                   
Query: 376 cgatcgtagacgatctccgttcttttcgcaacatcatccc 415
           ||||| || || ||||| |||||||| |||||||| ||||
Sbjct: 779 cgatcataaacaatctcagttcttttggcaacatcgtccc 818
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                            
Query: 655      atatgaccagatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctca 714
                |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 10010593 atatgaccagatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctca 10010652

                               
Query: 715      actctatcctgaagg 729
                |||||||||||||||
Sbjct: 10010653 actctatcctgaagg 10010667



 Score =  123 bits (62), Expect = 9e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                            
Query: 440      gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 499
                ||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 10009613 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 10009672

                                                                      
Query: 500      ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 553
                |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 10009673 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 10009726



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                            
Query: 550      acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 609
                ||||||||||| || ||||||||||| ||||| ||||| |  ||||| ||||||||||||
Sbjct: 10009824 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 10009883

                                                   
Query: 610      agaatggctatgcaaaatgcttctgtaagcgaact 644
                | ||||||||| ||||| || ||||||||||||||
Sbjct: 10009884 aaaatggctatacaaaaggcctctgtaagcgaact 10009918



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 363      tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
                |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 10009368 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 10009427

                             
Query: 423      gagttttttcatc 435
                 || |||||||||
Sbjct: 10009428 aagctttttcatc 10009440



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                            
Query: 268      aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 327
                ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 10009163 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 10009222

                    
Query: 328      tatc 331
                ||||
Sbjct: 10009223 tatc 10009226



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 208      atatccgggacttcttcaataccttcag 235
                ||||| ||||| ||||||||||||||||
Sbjct: 10009031 atatctgggacctcttcaataccttcag 10009058
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>dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0685B06
          Length = 140293

 Score =  125 bits (63), Expect = 2e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                          
Query: 655    atatgaccagatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctca 714
              |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 140125 atatgaccagatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctca 140184

                             
Query: 715    actctatcctgaagg 729
              |||||||||||||||
Sbjct: 140185 actctatcctgaagg 140199



 Score =  123 bits (62), Expect = 9e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                          
Query: 440    gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 499
              ||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 139145 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 139204

                                                                    
Query: 500    ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 553
              |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 139205 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 139258



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                          
Query: 550    acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 609
              ||||||||||| || ||||||||||| ||||| ||||| |  ||||| ||||||||||||
Sbjct: 139356 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 139415

                                                 
Query: 610    agaatggctatgcaaaatgcttctgtaagcgaact 644
              | ||||||||| ||||| || ||||||||||||||
Sbjct: 139416 aaaatggctatacaaaaggcctctgtaagcgaact 139450



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                          
Query: 363    tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
              |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 138900 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 138959

                           
Query: 423    gagttttttcatc 435
               || |||||||||
Sbjct: 138960 aagctttttcatc 138972



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                          
Query: 268    aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 327
              ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 138695 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 138754

                  
Query: 328    tatc 331
              ||||
Sbjct: 138755 tatc 138758



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 208    atatccgggacttcttcaataccttcag 235
              ||||| ||||| ||||||||||||||||
Sbjct: 138563 atatctgggacctcttcaataccttcag 138590
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>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1001_C01
          Length = 90750

 Score =  125 bits (63), Expect = 2e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                         
Query: 655   atatgaccagatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctca 714
             |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 42242 atatgaccagatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctca 42301

                            
Query: 715   actctatcctgaagg 729
             |||||||||||||||
Sbjct: 42302 actctatcctgaagg 42316



 Score =  123 bits (62), Expect = 9e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                         
Query: 440   gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 499
             ||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 41262 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 41321

                                                                   
Query: 500   ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 553
             |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 41322 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 41375



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 550   acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 609
             ||||||||||| || ||||||||||| ||||| ||||| |  ||||| ||||||||||||
Sbjct: 41473 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 41532

                                                
Query: 610   agaatggctatgcaaaatgcttctgtaagcgaact 644
             | ||||||||| ||||| || ||||||||||||||
Sbjct: 41533 aaaatggctatacaaaaggcctctgtaagcgaact 41567



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                         
Query: 363   tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
             |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 41017 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 41076

                          
Query: 423   gagttttttcatc 435
              || |||||||||
Sbjct: 41077 aagctttttcatc 41089



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                         
Query: 268   aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 327
             ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 40812 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 40871

                 
Query: 328   tatc 331
             ||||
Sbjct: 40872 tatc 40875



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 208   atatccgggacttcttcaataccttcag 235
             ||||| ||||| ||||||||||||||||
Sbjct: 40680 atatctgggacctcttcaataccttcag 40707
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>ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transferring glycosyl groups
            AT3G45100 (SETH2) transcript variant AT3G45100.2 mRNA,
            complete cds
          Length = 1589

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 496  cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 555
            ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 1095 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 1036

                                         
Query: 556  ggaacccctccgactctagtgcttacagt 584
            || || ||||| || | |||||| |||||
Sbjct: 1035 gggacacctccaacacgagtgctgacagt 1007



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 279  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 320
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1312 gatcataaccatacaaaatagcttccctgcccaagctccaca 1271
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>ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transferring glycosyl groups
            AT3G45100 (SETH2) transcript variant AT3G45100.1 mRNA,
            complete cds
          Length = 1651

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 496  cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 555
            ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 1095 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 1036

                                         
Query: 556  ggaacccctccgactctagtgcttacagt 584
            || || ||||| || | |||||| |||||
Sbjct: 1035 gggacacctccaacacgagtgctgacagt 1007



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 279  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 320
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1312 gatcataaccatacaaaatagcttccctgcccaagctccaca 1271
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>gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, complete cds
          Length = 1344

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 496 cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 555
           ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 995 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 936

                                        
Query: 556 ggaacccctccgactctagtgcttacagt 584
           || || ||||| || | |||||| |||||
Sbjct: 935 gggacacctccaacacgagtgctgacagt 907



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 279  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 320
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1212 gatcataaccatacaaaatagcttccctgcccaagctccaca 1171
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>gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, complete cds
          Length = 1549

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 496  cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 555
            ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 1092 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 1033

                                         
Query: 556  ggaacccctccgactctagtgcttacagt 584
            || || ||||| || | |||||| |||||
Sbjct: 1032 gggacacctccaacacgagtgctgacagt 1004



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 279  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 320
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1309 gatcataaccatacaaaatagcttccctgcccaagctccaca 1268
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>emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3
          Length = 88010

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 496   cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggta 547
             ||||||||||| || ||||||||||| |||||||| | ||||||||||||||
Sbjct: 21005 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggta 20954



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 279   gatcataacgaggcaaaacagcttgcctgcccaagctccaca 320
             ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 21411 gatcataaccatacaaaatagcttccctgcccaagctccaca 21370
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 289     aggcaaaacagcttgcctgccca 311
               |||||||||||||||||||||||
Sbjct: 2617280 aggcaaaacagcttgcctgccca 2617302
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>ref|XM_418744.1| PREDICTED: Gallus gallus similar to KIAA1092 protein (LOC420645),
           mRNA
          Length = 3998

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 652 aatatatgaccagatatcagaa 673
           ||||||||||||||||||||||
Sbjct: 343 aatatatgaccagatatcagaa 364
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>ref|NM_001030808.1| Gallus gallus phosphatidylinositol glycan, class A (paroxysmal
           nocturnal hemoglobinuria) (PIGA), mRNA
          Length = 4310

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 592 ccacagcttgctgcttccagaatggctatgcaaaatgcttc 632
           ||||||||||||||||||| ||| || || ||||| |||||
Sbjct: 909 ccacagcttgctgcttccacaattgccatacaaaaggcttc 869
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>emb|AJ851372.1| Gallus gallus mRNA for hypothetical protein, clone 1a24
          Length = 4310

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 592 ccacagcttgctgcttccagaatggctatgcaaaatgcttc 632
           ||||||||||||||||||| ||| || || ||||| |||||
Sbjct: 909 ccacagcttgctgcttccacaattgccatacaaaaggcttc 869
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>gb|AC132307.5| Mus musculus BAC clone RP24-291H9 from chromosome 18, complete sequence
          Length = 179465

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 590   gcccacagcttgctgcttcc 609
             ||||||||||||||||||||
Sbjct: 79621 gcccacagcttgctgcttcc 79602
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>gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosome 2, complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    agtcactgcaggaccaggaa 54
             ||||||||||||||||||||
Sbjct: 58533 agtcactgcaggaccaggaa 58552
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>emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chromosome 13, complete
             sequence
          Length = 152890

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gcaggaattctagaaggcac 261
             ||||||||||||||||||||
Sbjct: 51592 gcaggaattctagaaggcac 51611
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>emb|AL031721.1|HS399E4 Human DNA sequence from clone LA16c-399E4 on chromosome 16 Contains
             part of a gene similar to D.melanogaster unkempt protein,
             ESTs, GSSs and CpG Islands, complete sequence
          Length = 36655

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 641   aactgttaagaaatatatga 660
             ||||||||||||||||||||
Sbjct: 22829 aactgttaagaaatatatga 22848
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>gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8
          Length = 279011

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 641   aactgttaagaaatatatga 660
             ||||||||||||||||||||
Sbjct: 62037 aactgttaagaaatatatga 62056
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>gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, complete sequence
          Length = 164964

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 348   caaattagtgtttgatgactgcat 371
             ||||| ||||||||||||||||||
Sbjct: 75560 caaataagtgtttgatgactgcat 75583
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>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ccacaatggttgcaaaacag 146
             ||||||||||||||||||||
Sbjct: 53851 ccacaatggttgcaaaacag 53832
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 253     agaaggcaccacgcaaggta 272
               ||||||||||||||||||||
Sbjct: 1120627 agaaggcaccacgcaaggta 1120608
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 659     gaccagatatcagaacagat 678
               ||||||||||||||||||||
Sbjct: 3253412 gaccagatatcagaacagat 3253431
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>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     agtcactgcaggaccaggaa 54
              ||||||||||||||||||||
Sbjct: 223839 agtcactgcaggaccaggaa 223858
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>gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4, complete sequence
          Length = 181576

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 648  aagaaatatatgaccagata 667
            ||||||||||||||||||||
Sbjct: 8915 aagaaatatatgaccagata 8934
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>ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 protein (LOC551689),
            mRNA
          Length = 3605

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 57   accgaaagaaattccagagtggga 80
            ||||||||||||| ||||||||||
Sbjct: 1685 accgaaagaaatttcagagtggga 1708
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>gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complete sequence
          Length = 170217

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 648   aagaaatatatgaccagata 667
             ||||||||||||||||||||
Sbjct: 77463 aagaaatatatgaccagata 77444
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>gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, complete sequence
          Length = 173504

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     agtcactgcaggaccaggaa 54
              ||||||||||||||||||||
Sbjct: 156603 agtcactgcaggaccaggaa 156584
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>dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, map 22, complete
             sequences
          Length = 213585

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 648   aagaaatatatgaccagata 667
             ||||||||||||||||||||
Sbjct: 93825 aagaaatatatgaccagata 93844
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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
             sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    agtcactgcaggaccaggaa 54
             ||||||||||||||||||||
Sbjct: 22528 agtcactgcaggaccaggaa 22509
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>gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, complete sequence
          Length = 252791

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     ctagcccaaactaggcatca 105
              ||||||||||||||||||||
Sbjct: 122130 ctagcccaaactaggcatca 122149
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>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 648   aagaaatatatgaccagata 667
             ||||||||||||||||||||
Sbjct: 36575 aagaaatatatgaccagata 36594
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>emb|AL772212.6| Mouse DNA sequence from clone RP23-80B16 on chromosome 4, complete
             sequence
          Length = 123527

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 642   actgttaagaaatatatgac 661
             ||||||||||||||||||||
Sbjct: 38426 actgttaagaaatatatgac 38407
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>dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16,
             LL56-APP region, complete sequence
          Length = 140249

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 648   aagaaatatatgaccagata 667
             ||||||||||||||||||||
Sbjct: 65380 aagaaatatatgaccagata 65399


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,780,914
Number of Sequences: 3902068
Number of extensions: 5780914
Number of successful extensions: 98603
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98407
Number of HSP's gapped (non-prelim): 194
length of query: 729
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 706
effective length of database: 17,143,297,704
effective search space: 12103168179024
effective search space used: 12103168179024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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