No.
Definition
Score (bits)
E Value
1 ref|XM_477385.1| Oryza sativa (japonica cultivar-group), mRNA
394
e-106
2 gb|AY110131.1| Zea mays CL15186_1 mRNA sequence
135
2e-28
3 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
4 dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
5 dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D...
125
2e-25
6 ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transf...
74
7e-10
7 ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transf...
74
7e-10
8 gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com...
74
7e-10
9 gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com...
74
7e-10
10 emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BA...
64
7e-07
11 dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
46
0.16
12 ref|XM_418744.1| PREDICTED: Gallus gallus similar to KIAA1092 pr...
44
0.64
13 ref|NM_001030808.1| Gallus gallus phosphatidylinositol glycan, c...
42
2.5
14 emb|AJ851372.1| Gallus gallus mRNA for hypothetical protein, clo...
42
2.5
15 gb|AC132307.5| Mus musculus BAC clone RP24-291H9 from chromosome...
40
10.0
16 gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosom...
40
10.0
17 emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chro...
40
10.0
18 emb|AL031721.1|HS399E4 Human DNA sequence from clone LA16c-399E4...
40
10.0
19 gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8
40
10.0
20 gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, com...
40
10.0
21 gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance...
40
10.0
22 dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
40
10.0
23 gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
40
10.0
24 gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl...
40
10.0
25 gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4,...
40
10.0
26 ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 p...
40
10.0
27 gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complet...
40
10.0
28 gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, com...
40
10.0
29 dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, ...
40
10.0
30 emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr...
40
10.0
31 gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, comple...
40
10.0
32 dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
10.0
33 emb|AL772212.6| Mouse DNA sequence from clone RP23-80B16 on chro...
40
10.0
34 dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21...
40
10.0
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 125 bits (63), Expect = 2e-25
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 655 atatgaccagatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctca 714
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 10010593 atatgaccagatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctca 10010652
Query: 715 actctatcctgaagg 729
|||||||||||||||
Sbjct: 10010653 actctatcctgaagg 10010667
Score = 123 bits (62), Expect = 9e-25
Identities = 101/114 (88%)
Strand = Plus / Plus
Query: 440 gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 499
||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 10009613 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 10009672
Query: 500 ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 553
|||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 10009673 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 10009726
Score = 93.7 bits (47), Expect = 8e-16
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 550 acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 609
||||||||||| || ||||||||||| ||||| ||||| | ||||| ||||||||||||
Sbjct: 10009824 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 10009883
Query: 610 agaatggctatgcaaaatgcttctgtaagcgaact 644
| ||||||||| ||||| || ||||||||||||||
Sbjct: 10009884 aaaatggctatacaaaaggcctctgtaagcgaact 10009918
Score = 81.8 bits (41), Expect = 3e-12
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 363 tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
|||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 10009368 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 10009427
Query: 423 gagttttttcatc 435
|| |||||||||
Sbjct: 10009428 aagctttttcatc 10009440
Score = 79.8 bits (40), Expect = 1e-11
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 268 aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 327
||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 10009163 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 10009222
Query: 328 tatc 331
||||
Sbjct: 10009223 tatc 10009226
Score = 40.1 bits (20), Expect = 10.0
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 208 atatccgggacttcttcaataccttcag 235
||||| ||||| ||||||||||||||||
Sbjct: 10009031 atatctgggacctcttcaataccttcag 10009058
>dbj|AP005201.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0685B06
Length = 140293
Score = 125 bits (63), Expect = 2e-25
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 655 atatgaccagatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctca 714
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 140125 atatgaccagatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctca 140184
Query: 715 actctatcctgaagg 729
|||||||||||||||
Sbjct: 140185 actctatcctgaagg 140199
Score = 123 bits (62), Expect = 9e-25
Identities = 101/114 (88%)
Strand = Plus / Plus
Query: 440 gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 499
||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 139145 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 139204
Query: 500 ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 553
|||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 139205 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 139258
Score = 93.7 bits (47), Expect = 8e-16
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 550 acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 609
||||||||||| || ||||||||||| ||||| ||||| | ||||| ||||||||||||
Sbjct: 139356 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 139415
Query: 610 agaatggctatgcaaaatgcttctgtaagcgaact 644
| ||||||||| ||||| || ||||||||||||||
Sbjct: 139416 aaaatggctatacaaaaggcctctgtaagcgaact 139450
Score = 81.8 bits (41), Expect = 3e-12
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 363 tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
|||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 138900 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 138959
Query: 423 gagttttttcatc 435
|| |||||||||
Sbjct: 138960 aagctttttcatc 138972
Score = 79.8 bits (40), Expect = 1e-11
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 268 aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 327
||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 138695 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 138754
Query: 328 tatc 331
||||
Sbjct: 138755 tatc 138758
Score = 40.1 bits (20), Expect = 10.0
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 208 atatccgggacttcttcaataccttcag 235
||||| ||||| ||||||||||||||||
Sbjct: 138563 atatctgggacctcttcaataccttcag 138590
>dbj|AP003797.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1001_C01
Length = 90750
Score = 125 bits (63), Expect = 2e-25
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 655 atatgaccagatatcagaacagatcgtacttgagcatgaggtacagcccctaacatctca 714
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 42242 atatgaccagatatcagaacagatcgcacttgagcatgaggcacagctcctaacatctca 42301
Query: 715 actctatcctgaagg 729
|||||||||||||||
Sbjct: 42302 actctatcctgaagg 42316
Score = 123 bits (62), Expect = 9e-25
Identities = 101/114 (88%)
Strand = Plus / Plus
Query: 440 gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 499
||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 41262 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 41321
Query: 500 ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 553
|||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 41322 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 41375
Score = 93.7 bits (47), Expect = 8e-16
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 550 acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 609
||||||||||| || ||||||||||| ||||| ||||| | ||||| ||||||||||||
Sbjct: 41473 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 41532
Query: 610 agaatggctatgcaaaatgcttctgtaagcgaact 644
| ||||||||| ||||| || ||||||||||||||
Sbjct: 41533 aaaatggctatacaaaaggcctctgtaagcgaact 41567
Score = 81.8 bits (41), Expect = 3e-12
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 363 tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 422
|||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 41017 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 41076
Query: 423 gagttttttcatc 435
|| |||||||||
Sbjct: 41077 aagctttttcatc 41089
Score = 79.8 bits (40), Expect = 1e-11
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 268 aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 327
||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 40812 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 40871
Query: 328 tatc 331
||||
Sbjct: 40872 tatc 40875
Score = 40.1 bits (20), Expect = 10.0
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 208 atatccgggacttcttcaataccttcag 235
||||| ||||| ||||||||||||||||
Sbjct: 40680 atatctgggacctcttcaataccttcag 40707
>dbj|AP001253.1 | Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16,
LL56-APP region, complete sequence
Length = 140249
Score = 40.1 bits (20), Expect = 10.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 648 aagaaatatatgaccagata 667
||||||||||||||||||||
Sbjct: 65380 aagaaatatatgaccagata 65399
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,780,914
Number of Sequences: 3902068
Number of extensions: 5780914
Number of successful extensions: 98603
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98407
Number of HSP's gapped (non-prelim): 194
length of query: 729
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 706
effective length of database: 17,143,297,704
effective search space: 12103168179024
effective search space used: 12103168179024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)