ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasda21 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 231 bits (588), Expect = 2e-60 Identities = 111/142 (78%), Positives = 127/142 (89%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 RA LDL+FEEGL+N+I RH RLG ATRLAV AWGLKNCT+KEE S+TVTAV+VPP+ID Sbjct: 260 RAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDG 319 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKL 279 SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM+LKD+GYPV + Sbjct: 320 SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVM 379 Query: 278 GSGVAAAAAYLSNSTPLIPSRI 213 GSGVAAA+ YL + PLIPSRI Sbjct: 380 GSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 158 bits (400), Expect = 1e-38 Identities = 81/131 (61%), Positives = 98/131 (74%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R L LFEEGL+NV RH LG ATR AVAAWGLK C + E SDTVTA++ P +D+ Sbjct: 241 REALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDA 300 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKL 279 ++I+KHA+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG + G EM L D G V Sbjct: 301 AKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTP 360 Query: 278 GSGVAAAAAYL 246 GSGVAAA++YL Sbjct: 361 GSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 156 bits (395), Expect = 4e-38 Identities = 81/134 (60%), Positives = 96/134 (71%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R LDLLF EGLDNV RHTRL + R AV AWGLK C ++ + +SDTV+A++VP IDS Sbjct: 255 RTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDS 314 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKL 279 + I K A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L EM LKD G +KL Sbjct: 315 NAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKL 374 Query: 278 GSGVAAAAAYLSNS 237 GSG AAA Y S + Sbjct: 375 GSGTGAAAEYFSKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 88.2 bits (217), Expect = 2e-17 Identities = 53/128 (41%), Positives = 75/128 (58%) Frame = -3 Query: 629 LDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEI 450 LDL+ EEG++N +KRH RL ATR + A G++ KE S TVT+ P I+ S+ Sbjct: 257 LDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKF 315 Query: 449 VKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSG 270 +YN+ + G +AGK+FRIGH+G E ++L L VE+ LK++G+ VK SG Sbjct: 316 RGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESG 374 Query: 269 VAAAAAYL 246 V A L Sbjct: 375 VEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 79.0 bits (193), Expect = 1e-14 Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Frame = -3 Query: 629 LDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEI 450 L ++ +EGL+++ RH R ATR A+ A L +E S +TAV P +++ +I Sbjct: 255 LGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAVATPG-MEADKI 312 Query: 449 VKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP-VKLGS 273 KR++++L G + ++ K+FR+GHLG +++ +L C+ +E+VL ++G+ G+ Sbjct: 313 RSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGA 372 Query: 272 GVAAAAAYLSN 240 GVAAAA SN Sbjct: 373 GVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 74.3 bits (181), Expect = 3e-13 Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 + L+++ EGL+ + +RH RL ATR A+ A L + S +TAV P +++ Sbjct: 252 KTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAVA-PQGVEA 309 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP-VK 282 I KR++++L G + + G++FRIGHLG + + +L + +E VL ++GY Sbjct: 310 ENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFT 369 Query: 281 LGSGVAAAAAYLSNS 237 G+GVAAA+ LS + Sbjct: 370 PGAGVAAASRVLSTA 384
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 51.2 bits (121), Expect = 3e-06 Identities = 32/93 (34%), Positives = 46/93 (49%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R GL LL E+GL+N ++H + A GL+ + TVT V VP D Sbjct: 295 REGLALLSEQGLENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTVTTVAVPTGYDW 354 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 +IV + +R+ + + GL GKV RIG +G Sbjct: 355 RDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG 387
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R G+ L+ EEGL+ +RH A + A GL+ + VT V +P ID Sbjct: 277 REGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VVTCVEIPGGIDG 335 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLKDIGYPVK 282 + ++ + + +AGK++RIG +G+ + +L L G+E VL ++ Sbjct: 336 ESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIE 395 Query: 281 LGSGVAAAAAYLSNS 237 G + AA N+ Sbjct: 396 AGKALQAALDVYENA 410
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 48.5 bits (114), Expect = 2e-05 Identities = 30/94 (31%), Positives = 44/94 (46%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R L L+ E+GL+N +RH + GLK + E T+T V VP + Sbjct: 295 RESLALISEQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNW 354 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 357 +IV + +N+ + GL KV RIG LG+ Sbjct: 355 RDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/93 (32%), Positives = 44/93 (47%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R L L+ E+GL+N ++H + A GL+ + TVT V VP D Sbjct: 273 RESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDW 332 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 +IV + +++ + GL GKV RIG LG Sbjct: 333 RDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/93 (31%), Positives = 44/93 (47%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R L L+ E+GL+N ++H + + GL+ + TVT V VP D Sbjct: 295 RESLALIAEQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTVTTVAVPAGYDW 354 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 +IV + +++ + GL GKV RIG LG Sbjct: 355 RDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/93 (31%), Positives = 42/93 (45%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R L LL E+GL+ +RH + + GL+ + TVT V+VP Sbjct: 273 RESLALLVEQGLEKSWQRHREVAQHLYRRLQELGLQLFVKDPALRLPTVTTVIVPASYRW 332 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 +IV + + + + GL A KV RIG LG Sbjct: 333 RDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -3 Query: 455 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 288 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 287 VK 282 VK Sbjct: 135 VK 136
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 39.7 bits (91), Expect = 0.008 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = -3 Query: 638 RAGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDS 459 R L L+ E GL+N +RH + GLK + E T+T V Y + Sbjct: 295 RESLALIAERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTAAGY-NW 353 Query: 458 SEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 357 +IV + +++ + GL +V RIG LG+ Sbjct: 354 RDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 387
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.94 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +2 Query: 239 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 331 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 32.7 bits (73), Expect = 0.94 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -3 Query: 617 FEEGLDN--VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIV 447 F+ GL + V +R L TR ++ W GL+ T S +TA +PP D++ + Sbjct: 292 FQAGLGHGRVRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLR 351 Query: 446 KHAWKRYNLSLGLGLNKVAGKVFRI 372 W R+ + + + L++ G + R+ Sbjct: 352 HGLWDRFRIDVPV-LDRPDGPLLRV 375
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +1 Query: 241 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 372 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 239 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 337 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 7.9 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 217 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 375 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,892,161 Number of Sequences: 219361 Number of extensions: 1531898 Number of successful extensions: 6200 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5520 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6169 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
