>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
           (hVPS35) (Maternal-embryonic 3)
          Length = 796

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -3

Query: 712 AQQMANVSKGSSGSVILFIEILNKYLYFFEKGIPQITNTVIQDLIELIRTEKQN-DSSAS 536
           A ++AN     S  V LFIEILN+Y+YF+EK    +T  V+  LI+ IR +  N +SS  
Sbjct: 703 ALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEE 762

Query: 535 DPSAEAFFASTLRYIEFQKQKGGSIGEKYE 446
                  F +TL ++  +++   S G  YE
Sbjct: 763 TEQINKHFHNTLEHLRLRRESPESEGPIYE 792

>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
           (Maternal-embryonic 3)
          Length = 796

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -3

Query: 712 AQQMANVSKGSSGSVILFIEILNKYLYFFEKGIPQITNTVIQDLIELIRTEKQN-DSSAS 536
           A ++AN     S  V LFIEILN+Y+YF+EK    +T  V+  LI+ IR +  N +SS  
Sbjct: 703 ALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEE 762

Query: 535 DPSAEAFFASTLRYIEFQKQKGGSIGEKYE 446
                  F +TL ++  +++   S G  YE
Sbjct: 763 TEQINKHFHNTLEHLRSRRESPESEGPIYE 792

>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35|
          Length = 944

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
 Frame = -3

Query: 664 LFIEILNKYLYFF---EKGIPQITNTVIQDLIELIRTE----KQNDSSAS 536
           L +EILN+ LY+F   ++    I+   I  LIELI+T     K  D+SAS
Sbjct: 792 LMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKSLKLEDNSAS 841

>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35|
          Length = 785

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -3

Query: 673 SVILFIEILNKYLYFFEKGIPQITNTVIQDLIELIRTEKQN-------DSSASDPSAEA 518
           S+ LFI IL +Y Y++++    I    I  LI+L     ++       D  ASDP A A
Sbjct: 687 SLKLFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRSILISSPADLIASDPRAYA 745

>IIGP1_MOUSE (Q9QZ85) Interferon-inducible GTPase (EC 3.6.5.-)|
          Length = 413

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query: 688 KGSSGSVILFIEILNKYLYFFEKGIPQITNTVIQDLIELIRTEKQNDSSASDP-SAEAFF 512
           K ++G  I+  EILN       KG  Q+TN+ I D ++ I +   N +   +  S ++ F
Sbjct: 26  KFNTGRKIISQEILNLIELRMRKGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSF 85

Query: 511 ASTLRYIEFQKQKGGSIG 458
            +TLR I  +++     G
Sbjct: 86  INTLRGIGNEEEGAAKTG 103

>PIVA2_ADECT (P87552) Maturation protein (Protein IVA2)|
          Length = 446

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -1

Query: 297 CLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVIS-CTLWEAQVCTGYLCTGVPLLYIP 121
           C +S    NLM   + V    T+F +   VD +       WE Q+C G    G     +P
Sbjct: 174 CGKSQLLRNLMSAQLIVPAPETVFFITPQVDMIPPQEIAAWETQICEGNFLAGPENTVVP 233

Query: 120 FSSSYFAKRVNFRW 79
            S S   K V   +
Sbjct: 234 QSGSIMPKFVQMSY 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,375,069
Number of Sequences: 219361
Number of extensions: 2224130
Number of successful extensions: 6055
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6055
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7592921998
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)