ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasda18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 299 7e-78
2ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predic... 293 4e-76
3gb|AY112109.1| Zea mays CL26172_1 mRNA sequence 242 1e-60
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
5dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
6dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 3e-49
7dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 2e-35
8emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in ... 46 0.18
9gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, com... 44 0.69
10gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome... 44 0.69
11gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 44 0.69
12gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, compl... 42 2.7
13emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on ch... 42 2.7
14gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, comp... 42 2.7
15dbj|AB159656.1| Thorea riekei chloroplast rbcL gene for ribulose... 42 2.7
16gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 42 2.7
17gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, comp... 42 2.7
18gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 42 2.7
19gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 42 2.7
20ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-indu... 42 2.7

>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full
           insert sequence
          Length = 1002

 Score =  299 bits (151), Expect = 7e-78
 Identities = 277/318 (87%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526
           ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 595 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 536

                                                                       
Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586
           |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 535 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 476

                                                                       
Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaatttgatcgagc 646
           ||  ||| ||||||||||||||| || | |||||||||||||||||||| || ||| |||
Sbjct: 475 tcaaaggcctgcatcttgctgtccagcctctccattatctggtccccaacttcatcaagc 416

                                                                       
Query: 647 tctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtccttggtgaacttg 706
           ||||||||||||||||| |||||||  |||||||||||||| || ||||| |  ||||||
Sbjct: 415 tctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttg 356

                                                                       
Query: 707 gtcaggtaagcagaccgctcgtccangaagtttgtgatccggacctttctgcgtctgaag 766
           |||||||||||||| |||||||||| |||| ||||||| || ||| ||||||| ||||||
Sbjct: 355 gtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcacc-ttctgcgcctgaag 297

                             
Query: 767 catggcgatttttgcaag 784
           ||| ||||| || |||||
Sbjct: 296 cattgcgatcttcgcaag 279



 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                       
Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
           ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 847 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 788

                                                                       
Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337
           ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 787 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 728

                                                                       
Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397
           || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 727 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 668

                                  
Query: 398 atctctctgaccttctgtgcttc 420
           || ||| ||||||| ||||||||
Sbjct: 667 atatctttgaccttttgtgcttc 645



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>ref|NM_190643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score =  293 bits (148), Expect = 4e-76
 Identities = 265/303 (87%), Gaps = 1/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526
           ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 302 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 243

                                                                       
Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586
           |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 242 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 183

                                                                       
Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaatttgatcgagc 646
           ||  ||| ||||||||||||||| || | |||||||||||||||||||| || ||| |||
Sbjct: 182 tcaaaggcctgcatcttgctgtccagcctctccattatctggtccccaacttcatcaagc 123

                                                                       
Query: 647 tctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtccttggtgaacttg 706
           ||||||||||||||||| |||||||  |||||||||||||| || ||||| |  ||||||
Sbjct: 122 tctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttg 63

                                                                       
Query: 707 gtcaggtaagcagaccgctcgtccangaagtttgtgatccggacctttctgcgtctgaag 766
           |||||||||||||| |||||||||| |||| ||||||| || ||| ||||||| ||||||
Sbjct: 62  gtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcacc-ttctgcgcctgaag 4

              
Query: 767 cat 769
           |||
Sbjct: 3   cat 1



 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Minus

                                                                       
Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
           ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 554 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 495

                                                                       
Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337
           ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 494 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 435

                                                                       
Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397
           || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 434 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 375

                                  
Query: 398 atctctctgaccttctgtgcttc 420
           || ||| ||||||| ||||||||
Sbjct: 374 atatctttgaccttttgtgcttc 352



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>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence
          Length = 768

 Score =  242 bits (122), Expect = 1e-60
 Identities = 233/269 (86%), Gaps = 1/269 (0%)
 Strand = Plus / Plus

                                                                       
Query: 516 tccagtcttcgaagtcttctaacactctctcattcatttctatctcctgcctttgcattt 575
           |||||||||||||||| ||||||||  | || |||||||||||||| |||| ||| |  |
Sbjct: 289 tccagtcttcgaagtcctctaacaccttatcgttcatttctatctcttgccgttgtacct 348

                                                                       
Query: 576 cagctgtctcctcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaa 635
           |||| ||||||||| |||  ||||||||||||||||| | ||||| ||||||||| ||||
Sbjct: 349 cagccgtctcctcgaaggcttgcatcttgctgtcgagcctctccagtatctggtcaccaa 408

                                                                       
Query: 636 tttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtcct 695
               ||| || ||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 409 cggcatcaagttctttcatggcgttctgcccaatcaggtcgaactccgagtcggcgtcct 468

                                                                       
Query: 696 tggtgaacttggtcaggtaagcagaccgctcgtccangaagtttgtgatccggacctttc 755
           ||| ||||||||||||||||||||| |||||||||| ||||| |||||| || ||| |||
Sbjct: 469 tggcgaacttggtcaggtaagcagagcgctcgtccaagaagtctgtgatgcgcacc-ttc 527

                                        
Query: 756 tgcgtctgaagcatggcgatttttgcaag 784
           |||||||||||||||||||| | ||||||
Sbjct: 528 tgcgtctgaagcatggcgatctgtgcaag 556



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 107/129 (82%)
 Strand = Plus / Plus

                                                                       
Query: 301 tgttgcaaagacggcatttgcgattgtaagaccgagtatcgccatgagtgcaaggtaaat 360
           ||||||||||| |||||| || |||||||  ||||||||| |||| ||  | ||||||||
Sbjct: 77  tgttgcaaagatggcattcgcaattgtaatcccgagtatccccatcagccccaggtaaat 136

                                                                       
Query: 361 attcatccgagtttttgaccccgcactctcctctgcaatctctctgaccttctgtgcttc 420
            ||||| ||||     || || ||||||||||||||||||||| ||||||||||||||||
Sbjct: 137 gttcatacgagnnnnngatcctgcactctcctctgcaatctctttgaccttctgtgcttc 196

                    
Query: 421 gatcttggc 429
            | ||||||
Sbjct: 197 caccttggc 205



 Score = 73.8 bits (37), Expect = 8e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 225 gctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
           |||| ||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1   gctcgtagatgacctgagcaaccagaccaatgaaaatcagacccagagcagca 53



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 463 tttgaccttgccaaggcttttgaagaac 490
           ||||||||||||||||||||||||||||
Sbjct: 236 tttgaccttgccaaggcttttgaagaac 263



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                            
Query: 218      atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
                ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 36729541 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 36729600

                                                                            
Query: 278      accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337
                ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 36729601 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 36729660

                                                                            
Query: 338      atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397
                || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 36729661 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 36729720

                                       
Query: 398      atctctctgaccttctgtgcttc 420
                || ||| ||||||| ||||||||
Sbjct: 36729721 atatctttgaccttttgtgcttc 36729743



 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                            
Query: 467      accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526
                ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 36729793 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 36729852

                                                                            
Query: 527      aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586
                |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 36729853 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 36729912

                                                        
Query: 587      tcgtaggactgcatcttgctgtcgagacgctccattatct 626
                ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 36729913 tcaaaggcctgcatcttgctgtccagcctctccattatct 36729952



 Score =  145 bits (73), Expect = 3e-31
 Identities = 139/160 (86%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                            
Query: 625      ctggtccccaatttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggt 684
                ||||||||||| || ||| |||||||||||||||||||| |||||||  |||||||||||
Sbjct: 36730024 ctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggt 36730083

                                                                            
Query: 685      gtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccangaagtttgtgat 744
                ||| || ||||| |  |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 36730084 gtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgat 36730143

                                                        
Query: 745      ccggacctttctgcgtctgaagcatggcgatttttgcaag 784
                 || ||| ||||||| ||||||||| ||||| || |||||
Sbjct: 36730144 gcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 36730182



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 26       aggtttgagaaacctgtggtttataggccaagctaca 62
                |||||||||||||||||||| ||| ||||||||||||
Sbjct: 36729333 aggtttgagaaacctgtggtctattggccaagctaca 36729369



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 26       aggtttgagaaacctgtggtttataggccaagctaca 62
                |||||||||||||||||||| ||| ||||||||||||
Sbjct: 36729008 aggtttgagaaacctgtggtctattggccaagctaca 36729044



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>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529E05
          Length = 134982

 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                         
Query: 218   atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
             ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 55856 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 55915

                                                                         
Query: 278   accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337
             ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 55916 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 55975

                                                                         
Query: 338   atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397
             || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 55976 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 56035

                                    
Query: 398   atctctctgaccttctgtgcttc 420
             || ||| ||||||| ||||||||
Sbjct: 56036 atatctttgaccttttgtgcttc 56058



 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                         
Query: 467   accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526
             ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 56108 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 56167

                                                                         
Query: 527   aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586
             |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 56168 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 56227

                                                     
Query: 587   tcgtaggactgcatcttgctgtcgagacgctccattatct 626
             ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 56228 tcaaaggcctgcatcttgctgtccagcctctccattatct 56267



 Score =  145 bits (73), Expect = 3e-31
 Identities = 139/160 (86%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                         
Query: 625   ctggtccccaatttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggt 684
             ||||||||||| || ||| |||||||||||||||||||| |||||||  |||||||||||
Sbjct: 56339 ctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggt 56398

                                                                         
Query: 685   gtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccangaagtttgtgat 744
             ||| || ||||| |  |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct: 56399 gtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgat 56458

                                                     
Query: 745   ccggacctttctgcgtctgaagcatggcgatttttgcaag 784
              || ||| ||||||| ||||||||| ||||| || |||||
Sbjct: 56459 gcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 56497



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 26    aggtttgagaaacctgtggtttataggccaagctaca 62
             |||||||||||||||||||| ||| ||||||||||||
Sbjct: 55648 aggtttgagaaacctgtggtctattggccaagctaca 55684



 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 26    aggtttgagaaacctgtggtttataggccaagctaca 62
             |||||||||||||||||||| ||| ||||||||||||
Sbjct: 55323 aggtttgagaaacctgtggtctattggccaagctaca 55359



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>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full
            insert sequence
          Length = 3051

 Score =  204 bits (103), Expect = 3e-49
 Identities = 178/203 (87%)
 Strand = Plus / Plus

                                                                        
Query: 218  atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
            ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 2050 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 2109

                                                                        
Query: 278  accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337
            ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 2110 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 2169

                                                                        
Query: 338  atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397
            || ||||||||  |||||||||| ||||||| ||||||||| || ||||| || | ||||
Sbjct: 2170 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 2229

                                   
Query: 398  atctctctgaccttctgtgcttc 420
            || ||| ||||||| ||||||||
Sbjct: 2230 atatctttgaccttttgtgcttc 2252



 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                        
Query: 467  accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526
            ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 2302 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 2361

                                                                        
Query: 527  aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586
            |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 2362 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 2421

                                                    
Query: 587  tcgtaggactgcatcttgctgtcgagacgctccattatct 626
            ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 2422 tcaaaggcctgcatcttgctgtccagcctctccattatct 2461



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/111 (86%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                        
Query: 674  tcgaactcggtgtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccang 733
            |||||||||||||| || ||||| |  |||||||||||||||||||| |||||||||| |
Sbjct: 2473 tcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaag 2532

                                                               
Query: 734  aagtttgtgatccggacctttctgcgtctgaagcatggcgatttttgcaag 784
            ||| ||||||| || ||| ||||||| ||||||||| ||||| || |||||
Sbjct: 2533 aagcttgtgatgcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 2582



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>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full
            insert sequence
          Length = 3098

 Score =  159 bits (80), Expect = 2e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                        
Query: 467  accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526
            ||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| ||||||
Sbjct: 2323 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 2382

                                                                        
Query: 527  aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586
            |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| ||||||
Sbjct: 2383 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 2442

                                                    
Query: 587  tcgtaggactgcatcttgctgtcgagacgctccattatct 626
            ||  ||| ||||||||||||||| || | |||||||||||
Sbjct: 2443 tcaaaggcctgcatcttgctgtccagcctctccattatct 2482



 Score =  157 bits (79), Expect = 7e-35
 Identities = 118/131 (90%)
 Strand = Plus / Plus

                                                                        
Query: 218  atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277
            ||||| ||||| ||| |||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 2181 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 2240

                                                                        
Query: 278  accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337
            ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 2241 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 2300

                       
Query: 338  atcgccatgag 348
            || ||||||||
Sbjct: 2301 attgccatgag 2311



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/111 (86%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                        
Query: 674  tcgaactcggtgtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccang 733
            |||||||||||||| || ||||| |  |||||||||||||||||||| |||||||||| |
Sbjct: 2509 tcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaag 2568

                                                               
Query: 734  aagtttgtgatccggacctttctgcgtctgaagcatggcgatttttgcaag 784
            ||| ||||||| || ||| ||||||| ||||||||| ||||| || |||||
Sbjct: 2569 aagcttgtgatgcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 2618



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>emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in linkage group 23,
             complete sequence
          Length = 92984

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 398   atctctctgaccttctgtgcttc 420
             |||||||||||||||||||||||
Sbjct: 26234 atctctctgaccttctgtgcttc 26256



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>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence
          Length = 113095

 Score = 44.1 bits (22), Expect = 0.69
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 691   gtccttggtgaacttggtcagg 712
             ||||||||||||||||||||||
Sbjct: 38396 gtccttggtgaacttggtcagg 38417



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>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence
          Length = 194060

 Score = 44.1 bits (22), Expect = 0.69
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 691   gtccttggtgaacttggtcagg 712
             ||||||||||||||||||||||
Sbjct: 41365 gtccttggtgaacttggtcagg 41344



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 44.1 bits (22), Expect = 0.69
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 443     tcctcattgttttgaggttttt 464
               ||||||||||||||||||||||
Sbjct: 1907299 tcctcattgttttgaggttttt 1907320



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>gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, complete sequence
          Length = 101840

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 171   tctttcattcatctctttttt 191
             |||||||||||||||||||||
Sbjct: 57048 tctttcattcatctctttttt 57068



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>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete
             sequence
          Length = 106008

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 386   ctctcctctgcaatctctctg 406
             |||||||||||||||||||||
Sbjct: 34488 ctctcctctgcaatctctctg 34508



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>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence
          Length = 209754

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 245  accaggccaatgaaaattaga 265
            |||||||||||||||||||||
Sbjct: 3784 accaggccaatgaaaattaga 3764



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>dbj|AB159656.1| Thorea riekei chloroplast rbcL gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit, complete cds
          Length = 1467

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 cagctctttcattcatctctt 187
           |||||||||||||||||||||
Sbjct: 775 cagctctttcattcatctctt 755



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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    accaggccaatgaaaattaga 265
              |||||||||||||||||||||
Sbjct: 137390 accaggccaatgaaaattaga 137370



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>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence
          Length = 199004

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 245    accaggccaatgaaaattaga 265
              |||||||||||||||||||||
Sbjct: 195214 accaggccaatgaaaattaga 195234



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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    accaggccaatgaaaattaga 265
              |||||||||||||||||||||
Sbjct: 181629 accaggccaatgaaaattaga 181609



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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    accaggccaatgaaaattaga 265
              |||||||||||||||||||||
Sbjct: 172715 accaggccaatgaaaattaga 172695



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>ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-inducing protein
             (LOC292017), mRNA
          Length = 17592

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 386   ctctcctctgcaatctctctgacct 410
             |||||||||||||||||| ||||||
Sbjct: 12701 ctctcctctgcaatctctatgacct 12677


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,387,830
Number of Sequences: 3902068
Number of extensions: 7387830
Number of successful extensions: 161414
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161290
Number of HSP's gapped (non-prelim): 121
length of query: 788
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 765
effective length of database: 17,143,297,704
effective search space: 13114622743560
effective search space used: 13114622743560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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