Clone Name | rbasda18 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 Score = 299 bits (151), Expect = 7e-78 Identities = 277/318 (87%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526 ||||| |||||||||||||||||||| ||||| |||||||||| || ||||| |||||| Sbjct: 595 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 536 Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586 |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |||||| Sbjct: 535 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 476 Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaatttgatcgagc 646 || ||| ||||||||||||||| || | |||||||||||||||||||| || ||| ||| Sbjct: 475 tcaaaggcctgcatcttgctgtccagcctctccattatctggtccccaacttcatcaagc 416 Query: 647 tctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtccttggtgaacttg 706 ||||||||||||||||| ||||||| |||||||||||||| || ||||| | |||||| Sbjct: 415 tctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttg 356 Query: 707 gtcaggtaagcagaccgctcgtccangaagtttgtgatccggacctttctgcgtctgaag 766 |||||||||||||| |||||||||| |||| ||||||| || ||| ||||||| |||||| Sbjct: 355 gtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcacc-ttctgcgcctgaag 297 Query: 767 catggcgatttttgcaag 784 ||| ||||| || ||||| Sbjct: 296 cattgcgatcttcgcaag 279 Score = 204 bits (103), Expect = 3e-49 Identities = 178/203 (87%) Strand = Plus / Minus Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 ||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||| ||| Sbjct: 847 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 788 Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||| Sbjct: 787 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 728 Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397 || |||||||| |||||||||| ||||||| ||||||||| || ||||| || | |||| Sbjct: 727 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 668 Query: 398 atctctctgaccttctgtgcttc 420 || ||| ||||||| |||||||| Sbjct: 667 atatctttgaccttttgtgcttc 645
>ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 293 bits (148), Expect = 4e-76 Identities = 265/303 (87%), Gaps = 1/303 (0%) Strand = Plus / Minus Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526 ||||| |||||||||||||||||||| ||||| |||||||||| || ||||| |||||| Sbjct: 302 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 243 Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586 |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |||||| Sbjct: 242 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 183 Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaatttgatcgagc 646 || ||| ||||||||||||||| || | |||||||||||||||||||| || ||| ||| Sbjct: 182 tcaaaggcctgcatcttgctgtccagcctctccattatctggtccccaacttcatcaagc 123 Query: 647 tctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtccttggtgaacttg 706 ||||||||||||||||| ||||||| |||||||||||||| || ||||| | |||||| Sbjct: 122 tctttcatggcgttctggccaatcagatcgaactcggtgtccgcatccttcgcaaacttg 63 Query: 707 gtcaggtaagcagaccgctcgtccangaagtttgtgatccggacctttctgcgtctgaag 766 |||||||||||||| |||||||||| |||| ||||||| || ||| ||||||| |||||| Sbjct: 62 gtcaggtaagcagagcgctcgtccaagaagcttgtgatgcgcacc-ttctgcgcctgaag 4 Query: 767 cat 769 ||| Sbjct: 3 cat 1 Score = 204 bits (103), Expect = 3e-49 Identities = 178/203 (87%) Strand = Plus / Minus Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 ||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||| ||| Sbjct: 554 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 495 Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||| Sbjct: 494 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 435 Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397 || |||||||| |||||||||| ||||||| ||||||||| || ||||| || | |||| Sbjct: 434 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 375 Query: 398 atctctctgaccttctgtgcttc 420 || ||| ||||||| |||||||| Sbjct: 374 atatctttgaccttttgtgcttc 352
>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence Length = 768 Score = 242 bits (122), Expect = 1e-60 Identities = 233/269 (86%), Gaps = 1/269 (0%) Strand = Plus / Plus Query: 516 tccagtcttcgaagtcttctaacactctctcattcatttctatctcctgcctttgcattt 575 |||||||||||||||| |||||||| | || |||||||||||||| |||| ||| | | Sbjct: 289 tccagtcttcgaagtcctctaacaccttatcgttcatttctatctcttgccgttgtacct 348 Query: 576 cagctgtctcctcgtaggactgcatcttgctgtcgagacgctccattatctggtccccaa 635 |||| ||||||||| ||| ||||||||||||||||| | ||||| ||||||||| |||| Sbjct: 349 cagccgtctcctcgaaggcttgcatcttgctgtcgagcctctccagtatctggtcaccaa 408 Query: 636 tttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggtgtcggcgtcct 695 ||| || ||||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct: 409 cggcatcaagttctttcatggcgttctgcccaatcaggtcgaactccgagtcggcgtcct 468 Query: 696 tggtgaacttggtcaggtaagcagaccgctcgtccangaagtttgtgatccggacctttc 755 ||| ||||||||||||||||||||| |||||||||| ||||| |||||| || ||| ||| Sbjct: 469 tggcgaacttggtcaggtaagcagagcgctcgtccaagaagtctgtgatgcgcacc-ttc 527 Query: 756 tgcgtctgaagcatggcgatttttgcaag 784 |||||||||||||||||||| | |||||| Sbjct: 528 tgcgtctgaagcatggcgatctgtgcaag 556 Score = 91.7 bits (46), Expect = 3e-15 Identities = 107/129 (82%) Strand = Plus / Plus Query: 301 tgttgcaaagacggcatttgcgattgtaagaccgagtatcgccatgagtgcaaggtaaat 360 ||||||||||| |||||| || ||||||| ||||||||| |||| || | |||||||| Sbjct: 77 tgttgcaaagatggcattcgcaattgtaatcccgagtatccccatcagccccaggtaaat 136 Query: 361 attcatccgagtttttgaccccgcactctcctctgcaatctctctgaccttctgtgcttc 420 ||||| |||| || || ||||||||||||||||||||| |||||||||||||||| Sbjct: 137 gttcatacgagnnnnngatcctgcactctcctctgcaatctctttgaccttctgtgcttc 196 Query: 421 gatcttggc 429 | |||||| Sbjct: 197 caccttggc 205 Score = 73.8 bits (37), Expect = 8e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 225 gctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 |||| ||| |||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 1 gctcgtagatgacctgagcaaccagaccaatgaaaatcagacccagagcagca 53 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 463 tttgaccttgccaaggcttttgaagaac 490 |||||||||||||||||||||||||||| Sbjct: 236 tttgaccttgccaaggcttttgaagaac 263
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 204 bits (103), Expect = 3e-49 Identities = 178/203 (87%) Strand = Plus / Plus Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 ||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||| ||| Sbjct: 36729541 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 36729600 Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||| Sbjct: 36729601 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 36729660 Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397 || |||||||| |||||||||| ||||||| ||||||||| || ||||| || | |||| Sbjct: 36729661 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 36729720 Query: 398 atctctctgaccttctgtgcttc 420 || ||| ||||||| |||||||| Sbjct: 36729721 atatctttgaccttttgtgcttc 36729743 Score = 159 bits (80), Expect = 2e-35 Identities = 140/160 (87%) Strand = Plus / Plus Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526 ||||| |||||||||||||||||||| ||||| |||||||||| || ||||| |||||| Sbjct: 36729793 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 36729852 Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586 |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |||||| Sbjct: 36729853 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 36729912 Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatct 626 || ||| ||||||||||||||| || | ||||||||||| Sbjct: 36729913 tcaaaggcctgcatcttgctgtccagcctctccattatct 36729952 Score = 145 bits (73), Expect = 3e-31 Identities = 139/160 (86%), Gaps = 1/160 (0%) Strand = Plus / Plus Query: 625 ctggtccccaatttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggt 684 ||||||||||| || ||| |||||||||||||||||||| ||||||| ||||||||||| Sbjct: 36730024 ctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggt 36730083 Query: 685 gtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccangaagtttgtgat 744 ||| || ||||| | |||||||||||||||||||| |||||||||| |||| ||||||| Sbjct: 36730084 gtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgat 36730143 Query: 745 ccggacctttctgcgtctgaagcatggcgatttttgcaag 784 || ||| ||||||| ||||||||| ||||| || ||||| Sbjct: 36730144 gcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 36730182 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 26 aggtttgagaaacctgtggtttataggccaagctaca 62 |||||||||||||||||||| ||| |||||||||||| Sbjct: 36729333 aggtttgagaaacctgtggtctattggccaagctaca 36729369 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 26 aggtttgagaaacctgtggtttataggccaagctaca 62 |||||||||||||||||||| ||| |||||||||||| Sbjct: 36729008 aggtttgagaaacctgtggtctattggccaagctaca 36729044
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 204 bits (103), Expect = 3e-49 Identities = 178/203 (87%) Strand = Plus / Plus Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 ||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||| ||| Sbjct: 55856 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 55915 Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||| Sbjct: 55916 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 55975 Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397 || |||||||| |||||||||| ||||||| ||||||||| || ||||| || | |||| Sbjct: 55976 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 56035 Query: 398 atctctctgaccttctgtgcttc 420 || ||| ||||||| |||||||| Sbjct: 56036 atatctttgaccttttgtgcttc 56058 Score = 159 bits (80), Expect = 2e-35 Identities = 140/160 (87%) Strand = Plus / Plus Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526 ||||| |||||||||||||||||||| ||||| |||||||||| || ||||| |||||| Sbjct: 56108 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 56167 Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586 |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |||||| Sbjct: 56168 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 56227 Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatct 626 || ||| ||||||||||||||| || | ||||||||||| Sbjct: 56228 tcaaaggcctgcatcttgctgtccagcctctccattatct 56267 Score = 145 bits (73), Expect = 3e-31 Identities = 139/160 (86%), Gaps = 1/160 (0%) Strand = Plus / Plus Query: 625 ctggtccccaatttgatcgagctctttcatggcgttctgcccaatcatgtcgaactcggt 684 ||||||||||| || ||| |||||||||||||||||||| ||||||| ||||||||||| Sbjct: 56339 ctggtccccaacttcatcaagctctttcatggcgttctggccaatcagatcgaactcggt 56398 Query: 685 gtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccangaagtttgtgat 744 ||| || ||||| | |||||||||||||||||||| |||||||||| |||| ||||||| Sbjct: 56399 gtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaagaagcttgtgat 56458 Query: 745 ccggacctttctgcgtctgaagcatggcgatttttgcaag 784 || ||| ||||||| ||||||||| ||||| || ||||| Sbjct: 56459 gcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 56497 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 26 aggtttgagaaacctgtggtttataggccaagctaca 62 |||||||||||||||||||| ||| |||||||||||| Sbjct: 55648 aggtttgagaaacctgtggtctattggccaagctaca 55684 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 26 aggtttgagaaacctgtggtttataggccaagctaca 62 |||||||||||||||||||| ||| |||||||||||| Sbjct: 55323 aggtttgagaaacctgtggtctattggccaagctaca 55359
>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full insert sequence Length = 3051 Score = 204 bits (103), Expect = 3e-49 Identities = 178/203 (87%) Strand = Plus / Plus Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 ||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||| ||| Sbjct: 2050 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 2109 Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||| Sbjct: 2110 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 2169 Query: 338 atcgccatgagtgcaaggtaaatattcatccgagtttttgaccccgcactctcctctgca 397 || |||||||| |||||||||| ||||||| ||||||||| || ||||| || | |||| Sbjct: 2170 attgccatgagcccaaggtaaatgttcatcctagtttttgatcctgcactttcttttgca 2229 Query: 398 atctctctgaccttctgtgcttc 420 || ||| ||||||| |||||||| Sbjct: 2230 atatctttgaccttttgtgcttc 2252 Score = 159 bits (80), Expect = 2e-35 Identities = 140/160 (87%) Strand = Plus / Plus Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526 ||||| |||||||||||||||||||| ||||| |||||||||| || ||||| |||||| Sbjct: 2302 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 2361 Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586 |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |||||| Sbjct: 2362 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 2421 Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatct 626 || ||| ||||||||||||||| || | ||||||||||| Sbjct: 2422 tcaaaggcctgcatcttgctgtccagcctctccattatct 2461 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/111 (86%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 674 tcgaactcggtgtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccang 733 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| | Sbjct: 2473 tcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaag 2532 Query: 734 aagtttgtgatccggacctttctgcgtctgaagcatggcgatttttgcaag 784 ||| ||||||| || ||| ||||||| ||||||||| ||||| || ||||| Sbjct: 2533 aagcttgtgatgcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 2582
>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full insert sequence Length = 3098 Score = 159 bits (80), Expect = 2e-35 Identities = 140/160 (87%) Strand = Plus / Plus Query: 467 accttgccaaggcttttgaagaacatgccttcgtttttctcctcttcgatccagtcttcg 526 ||||| |||||||||||||||||||| ||||| |||||||||| || ||||| |||||| Sbjct: 2323 accttcccaaggcttttgaagaacataccttcatttttctccttctcaatccaatcttcg 2382 Query: 527 aagtcttctaacactctctcattcatttctatctcctgcctttgcatttcagctgtctcc 586 |||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |||||| Sbjct: 2383 aagtcttcaagcaccctctcgttcatttctatctcctgcctttgaacttcagcagtctcc 2442 Query: 587 tcgtaggactgcatcttgctgtcgagacgctccattatct 626 || ||| ||||||||||||||| || | ||||||||||| Sbjct: 2443 tcaaaggcctgcatcttgctgtccagcctctccattatct 2482 Score = 157 bits (79), Expect = 7e-35 Identities = 118/131 (90%) Strand = Plus / Plus Query: 218 atatcttgctcataggtgacctgagcaaccaggccaatgaaaattagacccagagcagca 277 ||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||| ||| Sbjct: 2181 atatcctgctcgtagatgacctgagcaaccaaaccaatgaatattagacccagagctgca 2240 Query: 278 accttcctccattccacctctggtgttgcaaagacggcatttgcgattgtaagaccgagt 337 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||| Sbjct: 2241 accttcctccactccacctcaggtgttgcgaagacggcatttgcaattgtaagcccgagt 2300 Query: 338 atcgccatgag 348 || |||||||| Sbjct: 2301 attgccatgag 2311 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/111 (86%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 674 tcgaactcggtgtcggcgtccttggtgaacttggtcaggtaagcagaccgctcgtccang 733 |||||||||||||| || ||||| | |||||||||||||||||||| |||||||||| | Sbjct: 2509 tcgaactcggtgtccgcatccttcgcaaacttggtcaggtaagcagagcgctcgtccaag 2568 Query: 734 aagtttgtgatccggacctttctgcgtctgaagcatggcgatttttgcaag 784 ||| ||||||| || ||| ||||||| ||||||||| ||||| || ||||| Sbjct: 2569 aagcttgtgatgcgcacc-ttctgcgcctgaagcattgcgatcttcgcaag 2618
>emb|CR318644.8| Zebrafish DNA sequence from clone DKEYP-11H3 in linkage group 23, complete sequence Length = 92984 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 398 atctctctgaccttctgtgcttc 420 ||||||||||||||||||||||| Sbjct: 26234 atctctctgaccttctgtgcttc 26256
>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence Length = 113095 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 691 gtccttggtgaacttggtcagg 712 |||||||||||||||||||||| Sbjct: 38396 gtccttggtgaacttggtcagg 38417
>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence Length = 194060 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 691 gtccttggtgaacttggtcagg 712 |||||||||||||||||||||| Sbjct: 41365 gtccttggtgaacttggtcagg 41344
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 443 tcctcattgttttgaggttttt 464 |||||||||||||||||||||| Sbjct: 1907299 tcctcattgttttgaggttttt 1907320
>gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, complete sequence Length = 101840 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 tctttcattcatctctttttt 191 ||||||||||||||||||||| Sbjct: 57048 tctttcattcatctctttttt 57068
>emb|AL020993.1|HS5O6 Human DNA sequence from clone RP1-5O6 on chromosome 22q12, complete sequence Length = 106008 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 ctctcctctgcaatctctctg 406 ||||||||||||||||||||| Sbjct: 34488 ctctcctctgcaatctctctg 34508
>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence Length = 209754 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 accaggccaatgaaaattaga 265 ||||||||||||||||||||| Sbjct: 3784 accaggccaatgaaaattaga 3764
>dbj|AB159656.1| Thorea riekei chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, complete cds Length = 1467 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cagctctttcattcatctctt 187 ||||||||||||||||||||| Sbjct: 775 cagctctttcattcatctctt 755
>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence Length = 166133 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 accaggccaatgaaaattaga 265 ||||||||||||||||||||| Sbjct: 137390 accaggccaatgaaaattaga 137370
>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence Length = 199004 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 accaggccaatgaaaattaga 265 ||||||||||||||||||||| Sbjct: 195214 accaggccaatgaaaattaga 195234
>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence Length = 184142 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 accaggccaatgaaaattaga 265 ||||||||||||||||||||| Sbjct: 181629 accaggccaatgaaaattaga 181609
>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence Length = 203368 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 accaggccaatgaaaattaga 265 ||||||||||||||||||||| Sbjct: 172715 accaggccaatgaaaattaga 172695
>ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-inducing protein (LOC292017), mRNA Length = 17592 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 386 ctctcctctgcaatctctctgacct 410 |||||||||||||||||| |||||| Sbjct: 12701 ctctcctctgcaatctctatgacct 12677 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,387,830 Number of Sequences: 3902068 Number of extensions: 7387830 Number of successful extensions: 161414 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 161290 Number of HSP's gapped (non-prelim): 121 length of query: 788 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 765 effective length of database: 17,143,297,704 effective search space: 13114622743560 effective search space used: 13114622743560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)