ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasda14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477385.1| Oryza sativa (japonica cultivar-group), mRNA 339 8e-90
2gb|AY110131.1| Zea mays CL15186_1 mRNA sequence 135 2e-28
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 123 8e-25
4dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic D... 123 8e-25
5dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D... 123 8e-25
6ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transf... 74 7e-10
7ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transf... 74 7e-10
8gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com... 74 7e-10
9gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, com... 74 7e-10
10emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BA... 64 7e-07
11dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 46 0.16
12ref|XM_418744.1| PREDICTED: Gallus gallus similar to KIAA1092 pr... 44 0.62
13ref|NM_001030808.1| Gallus gallus phosphatidylinositol glycan, c... 42 2.4
14emb|AJ851372.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.4
15gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosom... 40 9.7
16gb|AC132307.5| Mus musculus BAC clone RP24-291H9 from chromosome... 40 9.7
17ref|XM_974326.1| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.7
18ref|XM_487324.3| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.7
19ref|XM_981582.1| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.7
20gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosom... 40 9.7
21gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome... 40 9.7
22emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chro... 40 9.7
23emb|AL031721.1|HS399E4 Human DNA sequence from clone LA16c-399E4... 40 9.7
24gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8 40 9.7
25gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, com... 40 9.7
26gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 40 9.7
27dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 9.7
28gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 9.7
29dbj|AK170475.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.7
30gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 9.7
31gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4,... 40 9.7
32ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 p... 40 9.7
33gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complet... 40 9.7
34gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, com... 40 9.7
35ref|XM_341388.2| PREDICTED: Rattus norvegicus similar to polymer... 40 9.7
36dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, ... 40 9.7
37emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 9.7
38gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, comple... 40 9.7
39dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.7
40gb|BC053071.1| Mus musculus polymerase (RNA) III (DNA directed) ... 40 9.7
41emb|AL772212.6| Mouse DNA sequence from clone RP23-80B16 on chro... 40 9.7
42dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.7 
>ref|XM_477385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1317

 Score =  339 bits (171), Expect = 8e-90
 Identities = 291/331 (87%)
 Strand = Plus / Minus

                                                                        
Query: 372  tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 431
            |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 1194 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 1135

                                                                        
Query: 432  gagttttttcatccggcgatgcataatttggggatctataccaggcagtatgtcgatagc 491
             || |||||||| ||  ||||||||| |||||||||||| ||||| || || ||||||||
Sbjct: 1134 aagctttttcattcgaagatgcataacttggggatctatgccaggaagcatatcgatagc 1075

                                                                        
Query: 492  ttgcctgacagcccgtaccatatcttctggatctggttctgcaagtactatcatgtcatc 551
             | ||||||||| |||||||||||||| ||| |||||||||||||||||| ||| |||||
Sbjct: 1074 cttcctgacagctcgtaccatatcttcaggagctggttctgcaagtactaccatatcatc 1015

                                                                        
Query: 552  tggtagaacctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgc 611
            ||||| |||||||||||| || ||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 1014 tggtaaaacctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgc 955

                                                                        
Query: 612  tgcttccagaatggctatgcaaaatgcttctgtaagcgaactgttaagaaatatatgacc 671
            |||||||| ||||||||| ||||| || ||||||||||||||||| | ||| ||||||||
Sbjct: 954  tgcttccaaaatggctatacaaaaggcctctgtaagcgaactgttcaaaaaaatatgacc 895

                                           
Query: 672  agatatcagaacagatcgtacttgagcatga 702
            |||||||||||||||||| ||||||||||||
Sbjct: 894  agatatcagaacagatcgcacttgagcatga 864



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 217  atatccgggacttcttcaataccttcag 244
            ||||| ||||| ||||||||||||||||
Sbjct: 1294 atatctgggacctcttcaataccttcag 1267
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>gb|AY110131.1| Zea mays CL15186_1 mRNA sequence
          Length = 822

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Plus

                                                                       
Query: 205 tgtagtgaccctatatccgggacttcttcaataccttcagcaggctgcaggaattctaga 264
           ||||||| ||||||||| |||||||||||||||||| |||||||||| || ||||||| |
Sbjct: 599 tgtagtggccctatatctgggacttcttcaatacctacagcaggctgtagaaattctaaa 658

                                                                       
Query: 265 aggcaccacgcaaggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagct 324
           |||| |||    |||||||| ||||||||||| ||||||||||| || || ||||||| |
Sbjct: 659 aggcgccatagtaggtaattgatgatcataactaggcaaaacagttttccagcccaagat 718

                                                                       
Query: 325 ccacatgtgaggtatcggggaagatgatctagcaaattagtgtttgatgactgcattgca 384
           ||||| || || || || |||||  ||||||| ||||| ||  |||  || | |||||||
Sbjct: 719 ccacaagtaagataccgaggaaggcgatctagtaaatttgttgttggagattccattgca 778

                                                   
Query: 385 cgatcgtagacgatctccgttcttttcgcaacatcatccc 424
           ||||| || || ||||| |||||||| |||||||| ||||
Sbjct: 779 cgatcataaacaatctcagttcttttggcaacatcgtccc 818
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  123 bits (62), Expect = 8e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                            
Query: 449      gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 508
                ||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 10009613 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 10009672

                                                                      
Query: 509      ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 562
                |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 10009673 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 10009726



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                            
Query: 559      acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 618
                ||||||||||| || ||||||||||| ||||| ||||| |  ||||| ||||||||||||
Sbjct: 10009824 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 10009883

                                                   
Query: 619      agaatggctatgcaaaatgcttctgtaagcgaact 653
                | ||||||||| ||||| || ||||||||||||||
Sbjct: 10009884 aaaatggctatacaaaaggcctctgtaagcgaact 10009918



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 372      tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 431
                |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 10009368 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 10009427

                             
Query: 432      gagttttttcatc 444
                 || |||||||||
Sbjct: 10009428 aagctttttcatc 10009440



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                            
Query: 277      aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 336
                ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 10009163 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 10009222

                    
Query: 337      tatc 340
                ||||
Sbjct: 10009223 tatc 10009226



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                       
Query: 664      atatgaccagatatcagaacagatcgtacttgagcatga 702
                |||||||||||||||||||||||||| ||||||||||||
Sbjct: 10010593 atatgaccagatatcagaacagatcgcacttgagcatga 10010631



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 217      atatccgggacttcttcaataccttcag 244
                ||||| ||||| ||||||||||||||||
Sbjct: 10009031 atatctgggacctcttcaataccttcag 10009058
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>dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0685B06
          Length = 140293

 Score =  123 bits (62), Expect = 8e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                          
Query: 449    gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 508
              ||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 139145 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 139204

                                                                    
Query: 509    ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 562
              |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 139205 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 139258



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                          
Query: 559    acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 618
              ||||||||||| || ||||||||||| ||||| ||||| |  ||||| ||||||||||||
Sbjct: 139356 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 139415

                                                 
Query: 619    agaatggctatgcaaaatgcttctgtaagcgaact 653
              | ||||||||| ||||| || ||||||||||||||
Sbjct: 139416 aaaatggctatacaaaaggcctctgtaagcgaact 139450



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                          
Query: 372    tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 431
              |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 138900 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 138959

                           
Query: 432    gagttttttcatc 444
               || |||||||||
Sbjct: 138960 aagctttttcatc 138972



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                          
Query: 277    aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 336
              ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 138695 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 138754

                  
Query: 337    tatc 340
              ||||
Sbjct: 138755 tatc 138758



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                     
Query: 664    atatgaccagatatcagaacagatcgtacttgagcatga 702
              |||||||||||||||||||||||||| ||||||||||||
Sbjct: 140125 atatgaccagatatcagaacagatcgcacttgagcatga 140163



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 217    atatccgggacttcttcaataccttcag 244
              ||||| ||||| ||||||||||||||||
Sbjct: 138563 atatctgggacctcttcaataccttcag 138590
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>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1001_C01
          Length = 90750

 Score =  123 bits (62), Expect = 8e-25
 Identities = 101/114 (88%)
 Strand = Plus / Plus

                                                                         
Query: 449   gatgcataatttggggatctataccaggcagtatgtcgatagcttgcctgacagcccgta 508
             ||||||||| |||||||||||| ||||| || || |||||||| | ||||||||| ||||
Sbjct: 41262 gatgcataacttggggatctatgccaggaagcatatcgatagccttcctgacagctcgta 41321

                                                                   
Query: 509   ccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacct 562
             |||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||
Sbjct: 41322 ccatatcttcaggagctggttctgcaagtactaccatatcatctggtaaaacct 41375



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 559   acctctggaacccctccgactctagtgcttacagtcaaaagcccacagcttgctgcttcc 618
             ||||||||||| || ||||||||||| ||||| ||||| |  ||||| ||||||||||||
Sbjct: 41473 acctctggaacaccaccgactctagtacttactgtcaacaatccacaacttgctgcttcc 41532

                                                
Query: 619   agaatggctatgcaaaatgcttctgtaagcgaact 653
             | ||||||||| ||||| || ||||||||||||||
Sbjct: 41533 aaaatggctatacaaaaggcctctgtaagcgaact 41567



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                         
Query: 372   tgactgcattgcacgatcgtagacgatctccgttcttttcgcaacatcatcccaactata 431
             |||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||
Sbjct: 41017 tgactgcattgcacgatcatacacaatctctgttcttttcgccacatcgtcccaactata 41076

                          
Query: 432   gagttttttcatc 444
              || |||||||||
Sbjct: 41077 aagctttttcatc 41089



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                         
Query: 277   aggtaatttatgatcataacgaggcaaaacagcttgcctgcccaagctccacatgtgagg 336
             ||||| || ||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct: 40812 aggtagttgatgatcataacaagacaaaacagtttgcctgcccaagctccacatctgagg 40871

                 
Query: 337   tatc 340
             ||||
Sbjct: 40872 tatc 40875



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 664   atatgaccagatatcagaacagatcgtacttgagcatga 702
             |||||||||||||||||||||||||| ||||||||||||
Sbjct: 42242 atatgaccagatatcagaacagatcgcacttgagcatga 42280



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 217   atatccgggacttcttcaataccttcag 244
             ||||| ||||| ||||||||||||||||
Sbjct: 40680 atatctgggacctcttcaataccttcag 40707
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>ref|NM_180327.1| Arabidopsis thaliana SETH2; transferase, transferring glycosyl groups
            AT3G45100 (SETH2) transcript variant AT3G45100.2 mRNA,
            complete cds
          Length = 1589

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 505  cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 564
            ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 1095 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 1036

                                         
Query: 565  ggaacccctccgactctagtgcttacagt 593
            || || ||||| || | |||||| |||||
Sbjct: 1035 gggacacctccaacacgagtgctgacagt 1007



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 288  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 329
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1312 gatcataaccatacaaaatagcttccctgcccaagctccaca 1271
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>ref|NM_114379.2| Arabidopsis thaliana SETH2; transferase, transferring glycosyl groups
            AT3G45100 (SETH2) transcript variant AT3G45100.1 mRNA,
            complete cds
          Length = 1651

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 505  cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 564
            ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 1095 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 1036

                                         
Query: 565  ggaacccctccgactctagtgcttacagt 593
            || || ||||| || | |||||| |||||
Sbjct: 1035 gggacacctccaacacgagtgctgacagt 1007



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 288  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 329
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1312 gatcataaccatacaaaatagcttccctgcccaagctccaca 1271
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>gb|AY081726.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, complete cds
          Length = 1344

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 505 cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 564
           ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 995 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 936

                                        
Query: 565 ggaacccctccgactctagtgcttacagt 593
           || || ||||| || | |||||| |||||
Sbjct: 935 gggacacctccaacacgagtgctgacagt 907



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 288  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 329
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1212 gatcataaccatacaaaatagcttccctgcccaagctccaca 1171
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>gb|AY039602.1| Arabidopsis thaliana AT3g45100/T14D3_40 mRNA, complete cds
          Length = 1549

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 505  cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggtagaacctct 564
            ||||||||||| || ||||||||||| |||||||| | ||||||||||||||  ||||||
Sbjct: 1092 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggtaagacctct 1033

                                         
Query: 565  ggaacccctccgactctagtgcttacagt 593
            || || ||||| || | |||||| |||||
Sbjct: 1032 gggacacctccaacacgagtgctgacagt 1004



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 288  gatcataacgaggcaaaacagcttgcctgcccaagctccaca 329
            ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 1309 gatcataaccatacaaaatagcttccctgcccaagctccaca 1268
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>emb|AL138649.1|ATT14D3 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3
          Length = 88010

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 505   cgtaccatatcttctggatctggttctgcaagtactatcatgtcatctggta 556
             ||||||||||| || ||||||||||| |||||||| | ||||||||||||||
Sbjct: 21005 cgtaccatatcatccggatctggttcagcaagtacaaccatgtcatctggta 20954



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 288   gatcataacgaggcaaaacagcttgcctgcccaagctccaca 329
             ||||||||| |  ||||| ||||| |||||||||||||||||
Sbjct: 21411 gatcataaccatacaaaatagcttccctgcccaagctccaca 21370
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 298     aggcaaaacagcttgcctgccca 320
               |||||||||||||||||||||||
Sbjct: 2617280 aggcaaaacagcttgcctgccca 2617302
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>ref|XM_418744.1| PREDICTED: Gallus gallus similar to KIAA1092 protein (LOC420645),
           mRNA
          Length = 3998

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 661 aatatatgaccagatatcagaa 682
           ||||||||||||||||||||||
Sbjct: 343 aatatatgaccagatatcagaa 364
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>ref|NM_001030808.1| Gallus gallus phosphatidylinositol glycan, class A (paroxysmal
           nocturnal hemoglobinuria) (PIGA), mRNA
          Length = 4310

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 601 ccacagcttgctgcttccagaatggctatgcaaaatgcttc 641
           ||||||||||||||||||| ||| || || ||||| |||||
Sbjct: 909 ccacagcttgctgcttccacaattgccatacaaaaggcttc 869
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>emb|AJ851372.1| Gallus gallus mRNA for hypothetical protein, clone 1a24
          Length = 4310

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 601 ccacagcttgctgcttccagaatggctatgcaaaatgcttc 641
           ||||||||||||||||||| ||| || || ||||| |||||
Sbjct: 909 ccacagcttgctgcttccacaattgccatacaaaaggcttc 869
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>gb|AC154573.2| Mus musculus BAC clone RP23-398O19 from chromosome 14, complete sequence
          Length = 197419

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     caaagatctgttctcaaagc 43
              ||||||||||||||||||||
Sbjct: 145723 caaagatctgttctcaaagc 145742
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>gb|AC132307.5| Mus musculus BAC clone RP24-291H9 from chromosome 18, complete sequence
          Length = 179465

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   gcccacagcttgctgcttcc 618
             ||||||||||||||||||||
Sbjct: 79621 gcccacagcttgctgcttcc 79602
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>ref|XM_974326.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
            polypeptide A (Polr3a), mRNA
          Length = 4683

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   caaagatctgttctcaaagc 43
            ||||||||||||||||||||
Sbjct: 2584 caaagatctgttctcaaagc 2565
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>ref|XM_487324.3| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
            polypeptide A, transcript variant 1 (Polr3a), mRNA
          Length = 4683

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   caaagatctgttctcaaagc 43
            ||||||||||||||||||||
Sbjct: 2584 caaagatctgttctcaaagc 2565
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>ref|XM_981582.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
            polypeptide A (Polr3a), mRNA
          Length = 4685

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   caaagatctgttctcaaagc 43
            ||||||||||||||||||||
Sbjct: 2594 caaagatctgttctcaaagc 2575
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>gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosome 2, complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    agtcactgcaggaccaggaa 63
             ||||||||||||||||||||
Sbjct: 58533 agtcactgcaggaccaggaa 58552
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>gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome 14, complete sequence
          Length = 191747

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     caaagatctgttctcaaagc 43
              ||||||||||||||||||||
Sbjct: 182131 caaagatctgttctcaaagc 182112
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>emb|AL159155.8| Human DNA sequence from clone RP11-46I10 on chromosome 13, complete
             sequence
          Length = 152890

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gcaggaattctagaaggcac 270
             ||||||||||||||||||||
Sbjct: 51592 gcaggaattctagaaggcac 51611
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>emb|AL031721.1|HS399E4 Human DNA sequence from clone LA16c-399E4 on chromosome 16 Contains
             part of a gene similar to D.melanogaster unkempt protein,
             ESTs, GSSs and CpG Islands, complete sequence
          Length = 36655

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 650   aactgttaagaaatatatga 669
             ||||||||||||||||||||
Sbjct: 22829 aactgttaagaaatatatga 22848
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>gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8
          Length = 279011

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 650   aactgttaagaaatatatga 669
             ||||||||||||||||||||
Sbjct: 62037 aactgttaagaaatatatga 62056
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>gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, complete sequence
          Length = 164964

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 357   caaattagtgtttgatgactgcat 380
             ||||| ||||||||||||||||||
Sbjct: 75560 caaataagtgtttgatgactgcat 75583
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>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   ccacaatggttgcaaaacag 155
             ||||||||||||||||||||
Sbjct: 53851 ccacaatggttgcaaaacag 53832
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 262     agaaggcaccacgcaaggta 281
               ||||||||||||||||||||
Sbjct: 1120627 agaaggcaccacgcaaggta 1120608
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 668     gaccagatatcagaacagat 687
               ||||||||||||||||||||
Sbjct: 3253412 gaccagatatcagaacagat 3253431
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>dbj|AK170475.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630105C13
            product:Polymerase (RNA) III (DNA directed) (155kD)
            homolog [Homo sapiens], full insert sequence
          Length = 4696

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   caaagatctgttctcaaagc 43
            ||||||||||||||||||||
Sbjct: 2595 caaagatctgttctcaaagc 2576
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>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     agtcactgcaggaccaggaa 63
              ||||||||||||||||||||
Sbjct: 223839 agtcactgcaggaccaggaa 223858
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>gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4, complete sequence
          Length = 181576

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 657  aagaaatatatgaccagata 676
            ||||||||||||||||||||
Sbjct: 8915 aagaaatatatgaccagata 8934
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>ref|XM_624077.1| PREDICTED: Apis mellifera similar to MGC81066 protein (LOC551689),
            mRNA
          Length = 3605

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 66   accgaaagaaattccagagtggga 89
            ||||||||||||| ||||||||||
Sbjct: 1685 accgaaagaaatttcagagtggga 1708
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>gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complete sequence
          Length = 170217

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 657   aagaaatatatgaccagata 676
             ||||||||||||||||||||
Sbjct: 77463 aagaaatatatgaccagata 77444
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>gb|AC138674.7| Mus musculus chromosome 7, clone RP23-410I10, complete sequence
          Length = 173504

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     agtcactgcaggaccaggaa 63
              ||||||||||||||||||||
Sbjct: 156603 agtcactgcaggaccaggaa 156584
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>ref|XM_341388.2| PREDICTED: Rattus norvegicus similar to polymerase (RNA) III (DNA
            directed) (155kD) (predicted) (RGD1305574_predicted),
            mRNA
          Length = 4251

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   caaagatctgttctcaaagc 43
            ||||||||||||||||||||
Sbjct: 2538 caaagatctgttctcaaagc 2519
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>dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, map 22, complete
             sequences
          Length = 213585

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 657   aagaaatatatgaccagata 676
             ||||||||||||||||||||
Sbjct: 93825 aagaaatatatgaccagata 93844
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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
             sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    agtcactgcaggaccaggaa 63
             ||||||||||||||||||||
Sbjct: 22528 agtcactgcaggaccaggaa 22509
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>gb|AC140260.3| Mus musculus BAC clone RP23-311O16 from 6, complete sequence
          Length = 252791

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ctagcccaaactaggcatca 114
              ||||||||||||||||||||
Sbjct: 122130 ctagcccaaactaggcatca 122149
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>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 657   aagaaatatatgaccagata 676
             ||||||||||||||||||||
Sbjct: 36575 aagaaatatatgaccagata 36594
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>gb|BC053071.1| Mus musculus polymerase (RNA) III (DNA directed) polypeptide A, mRNA
            (cDNA clone IMAGE:6405202), complete cds
          Length = 4854

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   caaagatctgttctcaaagc 43
            ||||||||||||||||||||
Sbjct: 2561 caaagatctgttctcaaagc 2542
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>emb|AL772212.6| Mouse DNA sequence from clone RP23-80B16 on chromosome 4, complete
             sequence
          Length = 123527

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 651   actgttaagaaatatatgac 670
             ||||||||||||||||||||
Sbjct: 38426 actgttaagaaatatatgac 38407
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>dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16,
             LL56-APP region, complete sequence
          Length = 140249

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 657   aagaaatatatgaccagata 676
             ||||||||||||||||||||
Sbjct: 65380 aagaaatatatgaccagata 65399


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,534,895
Number of Sequences: 3902068
Number of extensions: 5534895
Number of successful extensions: 94933
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94724
Number of HSP's gapped (non-prelim): 207
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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