>ELAS_PSEAE (P14756) Pseudolysin precursor (EC 3.4.24.26) (Elastase) (Neutral|
           metalloproteinase)
          Length = 498

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -1

Query: 508 PSSGQVKLGGGYSGSLD-LASSRVPRCSNQTTLLFTDVGLRVVAE---KVKTKARGDFDR 341
           P + Q  +G G +  L  + S+ +P     T       G+RVV E   +VK   +    +
Sbjct: 43  PVTLQAAVGAGGADELKAIRSTTLPNGKQVTRYEQFHNGVRVVGEAITEVKGPGKSVAAQ 102

Query: 340 RSSSWVSFVAALHPGSPVAAVS 275
           RS  +V+ +AA  PGS  AAVS
Sbjct: 103 RSGHFVANIAADLPGSTTAAVS 124

>RPOB_PHOPR (Q6LLW2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1341

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 702 DAHAEKLRFLIDLFYQCTRGTASRRPKAEQIYNSLCSLPTCYDLS 568
           D+  ++L  L++++     G    R  AEQ++NSL      YDLS
Sbjct: 354 DSTTDRLSALVEIYRMMRPGEPPTREAAEQLFNSLFFSEDRYDLS 398

>MRT4_YEAST (P33201) mRNA turnover protein 4|
          Length = 236

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 433 CSNQTTLLFTDVGLRVVAEKVKTKARGDFDR 341
           CS  T LLFTD  +  V E  K+  R D+ R
Sbjct: 96  CSGVTGLLFTDEDVNTVKEYFKSYVRSDYSR 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,620,775
Number of Sequences: 219361
Number of extensions: 2024337
Number of successful extensions: 4856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4856
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)