ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasda09 |
|---|---|
| Clone Library Name | barley_pub |
>MRAY_PSEPF (Q3K741) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 32.7 bits (73), Expect = 0.90 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V+L L+FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLLVTLLFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>MRAY_PSE14 (Q48EF5) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 32.7 bits (73), Expect = 0.90 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V+L L+FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLLVTLLFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>SOX13_MOUSE (Q04891) SOX-13 protein| Length = 985 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/59 (30%), Positives = 24/59 (40%) Frame = -2 Query: 181 WDPDTNLQCIFSVCCGTSYFNLATCKISLAKFDDYC*LYTFQLK*TCTCQFHSCGYSHS 5 WD LQ S C YF L + + + F + L T C C+ H+C HS Sbjct: 745 WDSTPALQAPRSPLCHLGYFELCSLAVLVFVFQVHVPLAT-----VCLCEAHTCSSRHS 798
>MRAY_PSEF5 (Q4K6J0) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V+L L FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLLVTLAFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>MRAY_PSEAE (Q9HVZ8) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 31.6 bits (70), Expect = 2.0 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V++ L+FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLVVTLLFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>MRAY_PSEU2 (Q4ZNY7) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V+L +FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLLVTFLFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>MRAY_PSESM (Q87WY2) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V+L +FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLLVTFLFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>MRAY_PSEPK (Q88N79) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -1 Query: 443 YFWLVILS*LIFG*CGWLDMQKEV--RD*RFIPKQWR 339 Y W+V++ L FG GW+D ++V ++ R +P +W+ Sbjct: 97 YVWVVLIVTLAFGAIGWVDDYRKVIEKNSRGLPSRWK 133
>MSN2_YEAST (P33748) Zinc finger protein MSN2 (Multicopy suppressor of SNF1| protein 2) Length = 704 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 89 FSQTYFTSCQIKIGSSAANREDALKIRIRIPLENHQKNITSEN 217 F Q + KIGSS R+ A+ + +PL N Q NI+S + Sbjct: 561 FPQQGHHTMNSKIGSSLRRRKSAVPLMGTVPLTNQQNNISSSS 603
>HEM3_HELPJ (Q9ZMJ7) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 306 Score = 30.4 bits (67), Expect = 4.5 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +2 Query: 113 CQIKIGSSAANREDALKIRIRIPLENHQKNITSENQFYTNKSESYSVEMTLIKDMMRS 286 CQI IG A D +KIR + L N ++ I E Q +K++++ + L+++ ++S Sbjct: 239 CQIPIGVHANLMGDEVKIRAVLGLPNGKEVIAKEKQ--GDKTKAFDLVQELLEEFLQS 294
>Y2613_METAC (Q8TMP0) Putative serpin-like protein MA2613/MA2612| Length = 424 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +2 Query: 197 KNITSENQFYTNKSESYSVEMTLIKDMMRSRVSMAICLFKLPVEKLQLSIVLV 355 K +TS+ FY K E SV+M I ++ + +LP + LS+ +V Sbjct: 214 KKMTSKKTFYPTKREEVSVDMMYISSNFNYSENLKAKIIELPYKGNDLSMYIV 266
>SECA_RICPR (Q9ZCX7) Preprotein translocase secA subunit| Length = 906 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Frame = +2 Query: 95 QTYFTSCQIKIGSSAANREDALKIR-------IRIPLENHQKNITSENQFYTNKSESYSV 253 Q YF + G + + +A +++ + +P N I +++ Y +K E Y Sbjct: 365 QNYFRNYPKLAGMTGTSMTEASELKDIYNLDVVAVPTHNKVTRIDLDDEIYGSKQEKYDA 424 Query: 254 EMTLIKD 274 + LIKD Sbjct: 425 ILKLIKD 431
>TVB8_MOUSE (P06321) T-cell receptor beta chain V region A20.2.25 precursor| Length = 130 Score = 29.3 bits (64), Expect = 10.0 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 517 VSCFLLLVVADCLAQAMLVAIKSCRIFGL*SSPDLYLGNVD-GLICKKRLGINALY 353 +SC LLL V+ CL + L+ K + S L LG + L C++ LG NA+Y Sbjct: 1 MSCRLLLYVSLCLVETALMNTKITQ-----SPRYLILGRANKSLECEQHLGHNAMY 51
>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 Length = 697 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Frame = +1 Query: 469 WLGLNNLQPQEG----GSKKPQSMLAAKTTEASSIDQN 570 W L N QP G G+ PQS + AK EAS + N Sbjct: 4 WPELENAQPNPGKFIEGASGPQSSIPAKDKEASKTNDN 41
>CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic and hepatic tumor| over-expressed protein) (Ch-TOG protein) Length = 2032 Score = 29.3 bits (64), Expect = 10.0 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 360 ALIPNLFLHIKPSTLPKYKSGEDHKPKIRQLLMATSMAWAKQS 488 A+ PN+ H+K +P D K +R +AT AWA+Q+ Sbjct: 930 AMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQT 972
>RTG3_YEAST (P38165) Retrograde regulation protein 3| Length = 486 Score = 29.3 bits (64), Expect = 10.0 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +3 Query: 303 FVCSSFQLRSFNSPLFWYKALIPNLFLHIKPSTLPKYKSGEDHKPKIRQ 449 F+ SSF+ S N+P + ++ N+ +I P ++PK G K+R+ Sbjct: 237 FLSSSFRHGSINTPRTRHTSISSNMTENIGPGSVPKILGGLTSDEKLRR 285
>Y2908_YERPS (Q667T3) UPF0271 protein YPTB2908| Length = 245 Score = 29.3 bits (64), Expect = 10.0 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = -2 Query: 496 VVADCLAQAMLVAIKSCRIFGL*SSPDLYLGNVDGLICKKRLGINALYQNNGEL 335 ++AD +AQA+ S R+ GL S + G GL+ ++ + + YQ +G L Sbjct: 118 LLADAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVFADRHYQPDGTL 171
>Y2700_YERPE (Q8ZD89) UPF0271 protein YPO2700/y1276/YP2504| Length = 245 Score = 29.3 bits (64), Expect = 10.0 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = -2 Query: 496 VVADCLAQAMLVAIKSCRIFGL*SSPDLYLGNVDGLICKKRLGINALYQNNGEL 335 ++AD +AQA+ S R+ GL S + G GL+ ++ + + YQ +G L Sbjct: 118 LLADAIAQAVKAVDPSLRLVGLAGSELIRAGTRVGLVTRQEVFADRHYQPDGTL 171
>TVB2_MOUSE (P01735) T-cell receptor beta chain V region 86T1 precursor| Length = 133 Score = 29.3 bits (64), Expect = 10.0 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 517 VSCFLLLVVADCLAQAMLVAIKSCRIFGL*SSPDLYLGNVD-GLICKKRLGINALY 353 +SC LLL V+ CL + L+ K + S L LG + L C++ LG NA+Y Sbjct: 1 MSCRLLLYVSLCLVETALMNTKITQ-----SPRYLILGRANKSLECEQHLGHNAMY 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,101,874 Number of Sequences: 219361 Number of extensions: 1706628 Number of successful extensions: 4190 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4189 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
