Clone Name | rbasda06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY123417.1| Triticum aestivum putative glycine decarboxylase subunit mRNA, complete cds Length = 804 Score = 476 bits (240), Expect = e-131 Identities = 260/264 (98%), Gaps = 2/264 (0%) Strand = Plus / Minus Query: 399 aggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggagatgggcgag 458 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 476 aggccgggggtctcggacagctttgagttgacctcgacgacctcgccggagatgggcgag 417 Query: 459 ttgacgtcgctggtggccttcacactctccacgttgccgaaggctccgccctggctcacc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 ttgacgtcgctggtggccttcacactctccacgttgccgaaggctccgccctggctcacc 357 Query: 519 ttcgtgccggcctccggcagctccacgaacaccacctccccgagatggccctgggcgtgg 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ttcgtgccggcctccggcagctccacgaacaccacctccccgagatggccctgggcgtgg 297 Query: 579 tcactgatgccaatcgtggccacggagcccgtcgttcttgacccactcgtgggagggaag 638 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 296 tcactgatgccaatcgtggccacggag-ccgtcgttcttgacccactcgtggga-ggaag 239 Query: 639 tgtacttcaagccatcaataacag 662 |||||||||||||||||||||||| Sbjct: 238 tgtacttcaagccatcaataacag 215 Score = 343 bits (173), Expect = 5e-91 Identities = 206/216 (95%), Gaps = 2/216 (0%) Strand = Plus / Minus Query: 185 gaacgcatggtaaagctggtttaattattgtagataagagtagtcgacatggttgcaaca 244 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 803 gaacgcatggtgaagctggtttaattattgtagacaagagtagtcgacatggttgcaaca 744 Query: 245 aaa--ggaatgataagcgagcaagaaaccctagtgggcgtcctcctcctcgcagtgcttg 302 ||| |||| ||||| |||||||| | | ||||||||||||||||||||||||||||||| Sbjct: 743 aaaaaggaacgataatcgagcaaggagcactagtgggcgtcctcctcctcgcagtgcttg 684 Query: 303 gtgtacttggccgagtccagcaggccctccagctccgcggggctgctcggcttcaccttg 362 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 683 gtgtacttggccgagtccagcaggccctccagctccgccgggctgctcggcttcaccttg 624 Query: 363 atcatccacccctcctcgtacgggctcgagttgatc 398 |||||||||||||||||||||||||||||||||||| Sbjct: 623 atcatccacccctcctcgtacgggctcgagttgatc 588
>ref|NM_197349.1| Oryza sativa (japonica cultivar-group) putative glycine decarboxylase subunit (OSJNBa0076F20.1), mRNA Length = 768 Score = 389 bits (196), Expect = e-105 Identities = 345/392 (88%), Gaps = 2/392 (0%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 569 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 510 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 509 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 450 Query: 391 agttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggaga 450 |||| ||||||||||| | ||| || ||||| ||| |||||||||||||| ||||||| Sbjct: 449 agttaatcaggccgggtgtctcagagagcttgtcgttaacctcgacgacctcaccggaga 390 Query: 451 tgggcgagttgacgtcgctggtggccttcacactctccacgttgccgaaggctccgccct 510 |||| ||||||| |||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 389 tgggggagttgatgtcgctggtggccttcacactctccacgttgccgaatgcacctccct 330 Query: 511 ggctcaccttcgtgccggcctccggcagctccacgaacaccacctccccgagatggccct 570 |||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| Sbjct: 329 ggctcaccttcgcccccgcctccggcagctccacgaacaccacctctcccagatggccct 270 Query: 571 gggcgtggtcactgatgccaatcgtggccacggagcccgtcgttcttgacccactcgtgg 630 | || ||||| | || ||||| |||||||| ||| || || |||||||||||||| || Sbjct: 269 gagcatggtctgtaattccaattgtggccacagag-ccatcattcttgacccactcatga 211 Query: 631 gagggaagtgtacttcaagccatcaataacag 662 || ||| |||||||||| ||||||| ||||| Sbjct: 210 ga-ggagctgtacttcaacccatcaagaacag 180
>dbj|AK120480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P19, full insert sequence Length = 843 Score = 389 bits (196), Expect = e-105 Identities = 345/392 (88%), Gaps = 2/392 (0%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 657 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 598 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 597 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 538 Query: 391 agttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggaga 450 |||| ||||||||||| | ||| || ||||| ||| |||||||||||||| ||||||| Sbjct: 537 agttaatcaggccgggtgtctcagagagcttgtcgttaacctcgacgacctcaccggaga 478 Query: 451 tgggcgagttgacgtcgctggtggccttcacactctccacgttgccgaaggctccgccct 510 |||| ||||||| |||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 477 tgggggagttgatgtcgctggtggccttcacactctccacgttgccgaatgcacctccct 418 Query: 511 ggctcaccttcgtgccggcctccggcagctccacgaacaccacctccccgagatggccct 570 |||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| Sbjct: 417 ggctcaccttcgcccccgcctccggcagctccacgaacaccacctctcccagatggccct 358 Query: 571 gggcgtggtcactgatgccaatcgtggccacggagcccgtcgttcttgacccactcgtgg 630 | || ||||| | || ||||| |||||||| ||| || || |||||||||||||| || Sbjct: 357 gagcatggtctgtaattccaattgtggccacagag-ccatcattcttgacccactcatga 299 Query: 631 gagggaagtgtacttcaagccatcaataacag 662 || ||| |||||||||| ||||||| ||||| Sbjct: 298 ga-ggagctgtacttcaacccatcaagaacag 268
>dbj|AK104840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F04, full insert sequence Length = 714 Score = 389 bits (196), Expect = e-105 Identities = 345/392 (88%), Gaps = 2/392 (0%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 603 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 544 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 543 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 484 Query: 391 agttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggaga 450 |||| ||||||||||| | ||| || ||||| ||| |||||||||||||| ||||||| Sbjct: 483 agttaatcaggccgggtgtctcagagagcttgtcgttaacctcgacgacctcaccggaga 424 Query: 451 tgggcgagttgacgtcgctggtggccttcacactctccacgttgccgaaggctccgccct 510 |||| ||||||| |||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 423 tgggggagttgatgtcgctggtggccttcacactctccacgttgccgaatgcacctccct 364 Query: 511 ggctcaccttcgtgccggcctccggcagctccacgaacaccacctccccgagatggccct 570 |||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| Sbjct: 363 ggctcaccttcgcccccgcctccggcagctccacgaacaccacctctcccagatggccct 304 Query: 571 gggcgtggtcactgatgccaatcgtggccacggagcccgtcgttcttgacccactcgtgg 630 | || ||||| | || ||||| |||||||| ||| || || |||||||||||||| || Sbjct: 303 gagcatggtctgtaattccaattgtggccacagag-ccatcattcttgacccactcatga 245 Query: 631 gagggaagtgtacttcaagccatcaataacag 662 || ||| |||||||||| ||||||| ||||| Sbjct: 244 ga-ggagctgtacttcaacccatcaagaacag 214
>dbj|AK062851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A03, full insert sequence Length = 751 Score = 389 bits (196), Expect = e-105 Identities = 345/392 (88%), Gaps = 2/392 (0%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 616 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 557 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 556 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 497 Query: 391 agttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggaga 450 |||| ||||||||||| | ||| || ||||| ||| |||||||||||||| ||||||| Sbjct: 496 agttaatcaggccgggtgtctcagagagcttgtcgttaacctcgacgacctcaccggaga 437 Query: 451 tgggcgagttgacgtcgctggtggccttcacactctccacgttgccgaaggctccgccct 510 |||| ||||||| |||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 436 tgggggagttgatgtcgctggtggccttcacactctccacgttgccgaatgcacctccct 377 Query: 511 ggctcaccttcgtgccggcctccggcagctccacgaacaccacctccccgagatggccct 570 |||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| Sbjct: 376 ggctcaccttcgcccccgcctccggcagctccacgaacaccacctctcccagatggccct 317 Query: 571 gggcgtggtcactgatgccaatcgtggccacggagcccgtcgttcttgacccactcgtgg 630 | || ||||| | || ||||| |||||||| ||| || || |||||||||||||| || Sbjct: 316 gagcatggtctgtaattccaattgtggccacagag-ccatcattcttgacccactcatga 258 Query: 631 gagggaagtgtacttcaagccatcaataacag 662 || ||| |||||||||| ||||||| ||||| Sbjct: 257 ga-ggagctgtacttcaacccatcaagaacag 227
>gb|AF439730.1|AF439730 Zea mays glycine cleavage H-protein mRNA, partial cds Length = 402 Score = 234 bits (118), Expect = 3e-58 Identities = 249/290 (85%), Gaps = 2/290 (0%) Strand = Plus / Minus Query: 365 catccacccctcctcgtacgggctcgagttgatcaggccgggggcctcggacagcttcga 424 |||||| || || ||||||||||||| ||||||||||||||| | ||| ||||| || | Sbjct: 402 catccatccatcttcgtacgggctcgtgttgatcaggccgggcgtctctgacagtttggc 343 Query: 425 gttgacctcgacgacctcgccggagatgggcgagttgacgtcgctggtggccttcacact 484 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct: 342 attgacctcgacgacctcgccggagatcggggagttgacgtcgctggtggccttgacact 283 Query: 485 ctccacgttgccgaaggctccgccctggctcaccttcgtgccggcctccggcagctccac 544 ||||||||||||||||| ||| ||| | |||||||||||||| |||||||||||||| Sbjct: 282 ctccacgttgccgaaggatcctcccgcggccaccttcgtgccgggttccggcagctccac 223 Query: 545 gaacaccacctccccgagatggccctgggcgtggtcactgatgccaatcgtggccacgga 604 |||||||||||| || || |||||||| || ||||| ||||||||| ||||| ||| Sbjct: 222 gaacaccacctctcccaggtggccctgagcatggtccgtgatgccaacggtggcgacgtc 163 Query: 605 gcccgtcgttcttgacccactcgtgggagggaagtgtacttcaagccatc 654 |||||||| |||||||||| ||||| || | |||||||||||| ||||| Sbjct: 162 gcccgtcg-tcttgacccattcgtgagactg-agtgtacttcaacccatc 115
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 196 bits (99), Expect = 7e-47 Identities = 132/143 (92%) Strand = Plus / Minus Query: 429 acctcgacgacctcgccggagatgggcgagttgacgtcgctggtggccttcacactctcc 488 |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 4851 acctcgacgacctcaccggagatgggggagttgatgtcgctggtggccttcacactctcc 4792 Query: 489 acgttgccgaaggctccgccctggctcaccttcgtgccggcctccggcagctccacgaac 548 ||||||||||| || || |||||||||||||||| || ||||||||||||||||||||| Sbjct: 4791 acgttgccgaatgcacctccctggctcaccttcgcccccgcctccggcagctccacgaac 4732 Query: 549 accacctccccgagatggccctg 571 |||||||| || ||||||||||| Sbjct: 4731 accacctctcccagatggccctg 4709 Score = 174 bits (88), Expect = 2e-40 Identities = 115/124 (92%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 5339 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 5280 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 5279 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 5220 Query: 391 agtt 394 |||| Sbjct: 5219 agtt 5216
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 196 bits (99), Expect = 7e-47 Identities = 132/143 (92%) Strand = Plus / Minus Query: 429 acctcgacgacctcgccggagatgggcgagttgacgtcgctggtggccttcacactctcc 488 |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 19376985 acctcgacgacctcaccggagatgggggagttgatgtcgctggtggccttcacactctcc 19376926 Query: 489 acgttgccgaaggctccgccctggctcaccttcgtgccggcctccggcagctccacgaac 548 ||||||||||| || || |||||||||||||||| || ||||||||||||||||||||| Sbjct: 19376925 acgttgccgaatgcacctccctggctcaccttcgcccccgcctccggcagctccacgaac 19376866 Query: 549 accacctccccgagatggccctg 571 |||||||| || ||||||||||| Sbjct: 19376865 accacctctcccagatggccctg 19376843 Score = 174 bits (88), Expect = 2e-40 Identities = 115/124 (92%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 19377473 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 19377414 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 19377413 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 19377354 Query: 391 agtt 394 |||| Sbjct: 19377353 agtt 19377350
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 196 bits (99), Expect = 7e-47 Identities = 132/143 (92%) Strand = Plus / Minus Query: 429 acctcgacgacctcgccggagatgggcgagttgacgtcgctggtggccttcacactctcc 488 |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 19388261 acctcgacgacctcaccggagatgggggagttgatgtcgctggtggccttcacactctcc 19388202 Query: 489 acgttgccgaaggctccgccctggctcaccttcgtgccggcctccggcagctccacgaac 548 ||||||||||| || || |||||||||||||||| || ||||||||||||||||||||| Sbjct: 19388201 acgttgccgaatgcacctccctggctcaccttcgcccccgcctccggcagctccacgaac 19388142 Query: 549 accacctccccgagatggccctg 571 |||||||| || ||||||||||| Sbjct: 19388141 accacctctcccagatggccctg 19388119 Score = 174 bits (88), Expect = 2e-40 Identities = 115/124 (92%) Strand = Plus / Minus Query: 271 cctagtgggcgtcctcctcctcgcagtgcttggtgtacttggccgagtccagcaggccct 330 ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| | | Sbjct: 19388749 cctagtgagcgtcttcctcctcgcagtgcttggtgtacttggccgggtccagcagggcgt 19388690 Query: 331 ccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctcg 390 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 19388689 ccagctccgacgggctgctcggcttcaccttgatcatccacccgtcctcgtacgggcttg 19388630 Query: 391 agtt 394 |||| Sbjct: 19388629 agtt 19388626
>gb|AF022731.1|AF022731 Oryza sativa H protein subunit of glycine decarboxylase mRNA, complete cds Length = 764 Score = 157 bits (79), Expect = 6e-35 Identities = 229/278 (82%), Gaps = 1/278 (0%) Strand = Plus / Minus Query: 349 tcggcttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccggggg 408 |||| ||||||| |||||||||||| || ||||||||||| ||||| ||||||| ||| | Sbjct: 479 tcggtttcacctggatcatccacccgtcttcgtacgggcttgagttaatcaggcggggtg 420 Query: 409 cctcggacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgtcgc 468 ||| || ||||| ||| || |||||||| || ||||||||||| ||||||| ||||| Sbjct: 419 tctcagagagcttgtcgttaacttcgacgacttcaccggagatgggggagttgatgtcgc 360 Query: 469 tggtggccttcacactctccacgttgccgaaggctccgccctggctcaccttcgtgccgg 528 ||||| | |||||||| |||||||||| ||| || | || |||||||| |||| || | Sbjct: 359 tggtgcctttcacactttccacgttgcagaatgcacttccttggctcactttcgcccccg 300 Query: 529 cctccggcagctccacgaacaccacctccccgagatggccctgggcgtggtcactgatgc 588 | ||||||||||||||||||||||| | || ||||||||||| || ||||| | || | Sbjct: 299 cttccggcagctccacgaacaccacttntcccagatggccctgagcatggtctgtaattc 240 Query: 589 caatcgtggccacggagcccgtcgttcttgacccactc 626 |||| |||||||| ||| || || |||||||||||||| Sbjct: 239 caattgtggccacagag-ccatcattcttgacccactc 203
>emb|Z37519.1|FCGCSH3 F.cronquistii of gcsH gene encoding H-protein Length = 458 Score = 93.7 bits (47), Expect = 7e-16 Identities = 128/155 (82%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 428 tccagctccgatgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 369 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||||||||||||| ||||| |||| ||| || ||| Sbjct: 368 gaattgatcaaaccaggagtctcggacagcttcgagttcacctcaacgatctctccagag 309 Query: 450 atgggcgagttgacgtcgctggtggccttcacact 484 || || ||||| ||||| || ||||| || ||||| Sbjct: 308 atcggggagttaacgtcactagtggctttgacact 274 Score = 44.1 bits (22), Expect = 0.58 Identities = 37/42 (88%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtca 581 ||||| |||||||||||||| |||||| |||| || |||||| Sbjct: 218 tccacaaacaccacctccccaagatggtcctgagcatggtca 177
>emb|Z25855.1|FPHSGDC F.pringlei mRNA for H subunit of glycine decarboxylase multi-enzyme complex Length = 667 Score = 93.7 bits (47), Expect = 7e-16 Identities = 128/155 (82%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 432 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 373 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||| ||||||||| ||||| |||| ||| || ||| Sbjct: 372 gaattgatcaaaccaggagtctcggacaacttcgagttcacctcaacgatctctccagag 313 Query: 450 atgggcgagttgacgtcgctggtggccttcacact 484 || || ||||| ||||| |||||||| || ||||| Sbjct: 312 atcggggagttaacgtcactggtggctttaacact 278 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaat 592 ||||| |||||||||||||| |||||| |||| || |||||| |||| ||||| Sbjct: 222 tccacaaacaccacctccccaagatggtcctgagcatggtcagtgataccaat 170
>emb|Z37520.1|FCHGCSH F.chloraefolia of gcsH gene encoding H-protein Length = 458 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 428 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 369 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||| ||||||||| ||||| |||| ||| || ||| Sbjct: 368 gaattgatcaaaccaggagtctcggacaacttcgagttcacctcaacgatctctccagag 309 Query: 450 atgggcgagttgacgtcgctggt 472 || || ||||| ||||| ||||| Sbjct: 308 atcggggagttaacgtcactggt 286 Score = 40.1 bits (20), Expect = 9.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaa 591 ||||| |||||||||||||| ||||| |||| || |||||| |||| |||| Sbjct: 218 tccacaaacaccacctccccaagatgatcctgagcatggtcagtgataccaa 167
>emb|Z37528.1|FFGCSH F.floridana of gcsH gene encoding H-protein Length = 458 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 428 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 369 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||| ||||||||| ||||| |||| ||| || ||| Sbjct: 368 gaattgatcaaaccaggagtctcggacaacttcgagttcacctcaacgatctccccagag 309 Query: 450 atgggcgagttgacgtcgctggt 472 || || ||||| ||||| ||||| Sbjct: 308 atcggggagttaacgtcactggt 286 Score = 40.1 bits (20), Expect = 9.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaa 591 ||||| |||||||||||||| ||||| |||| || |||||| |||| |||| Sbjct: 218 tccacaaacaccacctccccaagatgatcctgagcatggtcagtgataccaa 167
>emb|Z37524.1|FAGCSH F.anomala of gcsH gene encoding H-protein Length = 628 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 428 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 369 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||| ||||||||| ||||| |||| ||| || ||| Sbjct: 368 gaattgatcaaaccaggagtctcggacaacttcgagttcacctcaacgatctctccagag 309 Query: 450 atgggcgagttgacgtcgctggt 472 || || ||||| ||||| ||||| Sbjct: 308 atcggggagttaacgtcactggt 286
>emb|Z37521.1|FLGCSH F.linearis of gcsH gene encoding H-protein Length = 458 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 428 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 369 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||| ||||||||| ||||| |||| ||| || ||| Sbjct: 368 gaattgatcaaaccaggagtctcggacaacttcgagttcacctcaacgatctccccagag 309 Query: 450 atgggcgagttgacgtcgctggt 472 || || ||||| ||||| ||||| Sbjct: 308 atcggggagttaacgtcactggt 286 Score = 40.1 bits (20), Expect = 9.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaa 591 ||||| |||||||||||||| ||||| |||| || |||||| |||| |||| Sbjct: 218 tccacaaacaccacctccccaagatgatcctgagcatggtcagtgataccaa 167
>emb|Z25856.1|FPHSGDC4 F.pringlei mRNA for H subunit of glycine decarboxylase multi-enzyme complex Length = 694 Score = 85.7 bits (43), Expect = 2e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 487 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 428 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | ||| |||| ||||||||| ||||| |||| ||| || ||| Sbjct: 427 gaattgatcaaaccaggagtctcagacaacttcgagttcacctcaacgatctctccagag 368 Query: 450 atgggcgagttgacgtcgctggtggccttcacact 484 || || ||||| ||||| |||||||| || ||||| Sbjct: 367 atcggggagttaacgtcactggtggctttgacact 333 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaat 592 ||||| |||||||||||||| ||||| |||| || |||||| |||| ||||| Sbjct: 277 tccacaaacaccacctccccaagatgatcctgagcatggtcagtgataccaat 225
>emb|Z25854.1|FCHSGDC F.cronquistii mRNA for H subunit of glycine decarboxylase multi-enzyme complex Length = 677 Score = 85.7 bits (43), Expect = 2e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || || |||||| Sbjct: 477 tccagctccgatgggttgcttggcttcaccttaatcatccatccatcttcatatgggctc 418 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 || ||||||| || || | |||||||||||| ||||| ||||| |||| ||| || ||| Sbjct: 417 gaattgatcaaaccaggagtctcggacagctttgagttcacctcaacgatctctccagag 358 Query: 450 atgggcgagttgacgtcgctggtggccttcacact 484 || || ||||| ||||| |||||||| || ||||| Sbjct: 357 atcggggagttaacgtcactggtggctttgacact 323 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaat 592 ||||| ||||||||||||||||||||| |||| || |||||| |||| ||||| Sbjct: 267 tccacaaacaccacctccccgagatggtcctgagcatggtcagtgataccaat 215
>emb|Z70304.1|FBGDCH F.brownii mRNA for H protein Length = 424 Score = 81.8 bits (41), Expect = 3e-12 Identities = 101/121 (83%) Strand = Plus / Minus Query: 352 gcttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccgggggcct 411 |||||||||| |||||||| || || || ||||||||||| ||||||| || || | || Sbjct: 406 gcttcaccttaatcatccatccatcttcatacgggctcgaattgatcaaaccaggagtct 347 Query: 412 cggacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgtcgctgg 471 |||||| ||||||||| ||||| |||| ||| || ||||| || ||||| |||||||||| Sbjct: 346 cggacaacttcgagttcacctcaacgatctctccagagatcggggagttaacgtcgctgg 287 Query: 472 t 472 | Sbjct: 286 t 286 Score = 40.1 bits (20), Expect = 9.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaa 591 ||||| |||||||||||||| ||||| |||| || |||||| |||| |||| Sbjct: 218 tccacaaacaccacctccccaagatgatcctgagcatggtcagtgataccaa 167
>emb|Z37530.1|FPUGCSH F.pubescens of gcsH gene encoding H-protein Length = 458 Score = 77.8 bits (39), Expect = 4e-11 Identities = 105/127 (82%) Strand = Plus / Minus Query: 346 tgctcggcttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccgg 405 |||| ||||||||||| |||||||| || || || ||||||||||| ||||||| || | Sbjct: 412 tgcttggcttcaccttaatcatccatccatcttcatacgggctcgaattgatcaaaccag 353 Query: 406 gggcctcggacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgt 465 | | |||||||| ||||||||| ||||| |||| ||| || ||||| || ||||| |||| Sbjct: 352 gagtctcggacaacttcgagttcacctcaacgatctctccagagatcggggagttaacgt 293 Query: 466 cgctggt 472 | ||||| Sbjct: 292 cactggt 286 Score = 40.1 bits (20), Expect = 9.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctgggcgtggtcactgatgccaa 591 ||||| |||||||||||||| ||||| |||| || |||||| |||| |||| Sbjct: 218 tccacaaacaccacctccccaagatgatcctgagcatggtcagtgataccaa 167
>ref|NM_102982.2| Arabidopsis thaliana glycine dehydrogenase (decarboxylating) AT1G32470 mRNA, complete cds Length = 758 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct: 522 tccaactccgcggggctgctcggtttcacctttatcatccaaccatcttcataagggctt 463 Query: 390 gagttgatca 399 |||||||||| Sbjct: 462 gagttgatca 453
>gb|AY078028.1| Arabidopsis thaliana At1g32470/F5D14_10 mRNA, complete cds Length = 501 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct: 440 tccaactccgcggggctgctcggtttcacctttatcatccaaccatcttcataagggctt 381 Query: 390 gagttgatca 399 |||||||||| Sbjct: 380 gagttgatca 371
>gb|AF332465.1| Arabidopsis thaliana clone C00173 (g) putative glycine cleavage system H protein precursor (At1g32470) mRNA, complete cds Length = 501 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct: 440 tccaactccgcggggctgctcggtttcacctttatcatccaaccatcttcataagggctt 381 Query: 390 gagttgatca 399 |||||||||| Sbjct: 380 gagttgatca 371
>gb|AF385740.1|AF385740 Arabidopsis thaliana At1g32470/F5D14_10 mRNA, complete cds Length = 717 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct: 497 tccaactccgcggggctgctcggtttcacctttatcatccaaccatcttcataagggctt 438 Query: 390 gagttgatca 399 |||||||||| Sbjct: 437 gagttgatca 428
>gb|AY089054.1| Arabidopsis thaliana clone 23118 mRNA, complete sequence Length = 736 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct: 520 tccaactccgcggggctgctcggtttcacctttatcatccaaccatcttcataagggctt 461 Query: 390 gagttgatca 399 |||||||||| Sbjct: 460 gagttgatca 451
>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 127462 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct: 101327 tccaactccgcggggctgctcggtttcacctttatcatccaaccatcttcataagggctt 101386 Query: 390 gagttgatc 398 ||||||||| Sbjct: 101387 gagttgatc 101395
>gb|AY825028.1| Chlamydomonas incerta mitochondrial glycine decarboxylase complex subunit H (gdcH) gene, partial cds; nuclear gene for mitochondrial product; and PR46a (PR46a) and PR46b (PR46b) genes, complete cds Length = 4472 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 423 gagttgacctcgacgacctcgccggagatgggcgagttgacgtcgctggtggcct 477 ||||||||||| |||||||||||| ||||||||||| ||| ||||||| ||||| Sbjct: 200 gagttgacctccacgacctcgccgctgatgggcgagtagacatcgctggcggcct 146
>emb|Z99763.1|FPZ99763 Flaveria pringlei gdcsH gene Length = 3555 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 3167 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 3108 Query: 390 gagttgatc 398 || |||||| Sbjct: 3107 gaattgatc 3099 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 540 tccacgaacaccacctccccgagatggccctg 571 ||||| |||||||||||||| |||||| |||| Sbjct: 2658 tccacaaacaccacctccccaagatggtcctg 2627
>emb|Z99530.1|FAGDCSH Flaveria anomala gdcsH gene Length = 4779 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 4139 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 4080 Query: 390 gagttgatc 398 || |||||| Sbjct: 4079 gaattgatc 4071
>emb|Z99764.1|FPZ99764 Flaveria pringlei gdcsH gene Length = 3111 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 2537 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 2478 Query: 390 gagttgatc 398 || |||||| Sbjct: 2477 gaattgatc 2469
>gb|DQ122896.1| Chlamydomonas incerta mitochondrial glycine decarboxylase complex H (GcvH) mRNA, complete cds; nuclear gene for mitochondrial product Length = 601 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 423 gagttgacctcgacgacctcgccggagatgggcgagttgacgtcgctggtggcctt 478 ||||||||||| ||| |||||||| ||||||||||| ||| ||||||| |||||| Sbjct: 338 gagttgacctccacggcctcgccgctgatgggcgagtagacatcgctggcggcctt 283
>emb|Z37518.1|FCGCSH2 F.cronquistii of gcsH gene encoding H-protein Length = 458 Score = 54.0 bits (27), Expect = 6e-04 Identities = 105/131 (80%) Strand = Plus / Minus Query: 354 ttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccgggggcctcg 413 |||||||| |||||||| || || || ||||||||||| ||||||| || || | |||| Sbjct: 404 ttcaccttaatcatccatccgtcttcatacgggctcgaattgatcaaaccaggagtctcg 345 Query: 414 gacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgtcgctggtg 473 ||||||| ||| ||||| |||| ||| || ||||| || ||||| ||||| |||||| Sbjct: 344 ctgagcttcgtgttcacctccacgatctctccagagatcggggagttaacgtcactggtg 285 Query: 474 gccttcacact 484 || || ||||| Sbjct: 284 gctttgacact 274
>emb|Z37523.1|FTGCSH F.trinervia of gcsH gene encoding H-protein Length = 650 Score = 54.0 bits (27), Expect = 6e-04 Identities = 123/155 (79%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 434 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 375 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacgacctcgccggag 449 ||||||| || || | || || || ||||||||| ||||| |||| ||| || ||| Sbjct: 374 ttattgatcaaaccaggagtcttggtcaacttcgagttcacctcaacgatctctccagag 315 Query: 450 atgggcgagttgacgtcgctggtggccttcacact 484 || || ||||| ||||| || ||||| || ||||| Sbjct: 314 atcggggagttaacgtcactagtggctttgacact 280
>emb|Z37522.1|FPHSGDCC F.pringlei of H-protein gene Length = 575 Score = 54.0 bits (27), Expect = 6e-04 Identities = 105/131 (80%) Strand = Plus / Minus Query: 354 ttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccgggggcctcg 413 |||||||| |||||||| || || || ||||||||||| ||||||| || || | |||| Sbjct: 403 ttcaccttaatcatccatccgtcttcatacgggctcgaattgatcaaaccaggagtctcg 344 Query: 414 gacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgtcgctggtg 473 ||||||| ||| ||||| |||| ||| || ||||| || ||||| ||||| |||||| Sbjct: 343 ctgagcttcgtgttcacctccacgatctctccagagatcggggagttaacgtcactggtg 284 Query: 474 gccttcacact 484 || || ||||| Sbjct: 283 gctttgacact 273
>ref|NM_129089.1| Arabidopsis thaliana GDCH AT2G35370 (GDCH) mRNA, complete cds Length = 803 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 574 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 515 Query: 390 gagttgatca 399 |||||||||| Sbjct: 514 gagttgatca 505
>gb|AY097349.1| Arabidopsis thaliana At2g35370/T32F12.25 mRNA, complete cds Length = 498 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 437 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 378 Query: 390 gagttgatca 399 |||||||||| Sbjct: 377 gagttgatca 368
>gb|AY058854.1| Arabidopsis thaliana At2g35370/T32F12.25 mRNA, complete cds Length = 654 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 481 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 422 Query: 390 gagttgatca 399 |||||||||| Sbjct: 421 gagttgatca 412
>gb|AY050446.1| Arabidopsis thaliana At2g35370/T32F12.25 mRNA, complete cds Length = 722 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 531 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 472 Query: 390 gagttgatca 399 |||||||||| Sbjct: 471 gagttgatca 462
>gb|AY086345.1| Arabidopsis thaliana clone 24194 mRNA, complete sequence Length = 803 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 574 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 515 Query: 390 gagttgatca 399 |||||||||| Sbjct: 514 gagttgatca 505
>gb|U27144.1|ATU27144 Arabidopsis thaliana glycine decarboxylase complex H-protein precursor gene, nuclear gene encoding mitochondrial protein, complete cds Length = 2040 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 1867 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 1808 Query: 390 gagttgatca 399 |||||||||| Sbjct: 1807 gagttgatca 1798
>gb|M82921.1|ATHGLYH Arabidopsis thaliana L. H-protein mRNA, complete cds Length = 641 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 458 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 399 Query: 390 gagttgatca 399 |||||||||| Sbjct: 398 gagttgatca 389
>emb|Z37529.1|FPAGCSH F.palmeri of gcsH gene encoding H-protein Length = 464 Score = 50.1 bits (25), Expect = 0.009 Identities = 88/109 (80%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 434 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 375 Query: 390 gagttgatcaggccgggggcctcggacagcttcgagttgacctcgacga 438 ||||||| || || | ||||| || ||||||||| ||||| |||| Sbjct: 374 ttattgatcaatccaggagtctcggtcaacttcgagttcacctcaacga 326
>gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F12 map ve016, complete sequence Length = 79881 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Plus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||| |||||||||||| || || ||||| ||||||||||| || || || || ||||| Sbjct: 56853 tccaactccgcggggctacttggtttcactttgatcatccaaccatcttcataggggctt 56912 Query: 390 gagttgatc 398 ||||||||| Sbjct: 56913 gagttgatc 56921
>emb|Z48797.1|FTGDCSH F.trinervia gdcsH gene for H-protein Length = 3640 Score = 48.1 bits (24), Expect = 0.037 Identities = 51/60 (85%) Strand = Plus / Minus Query: 330 tccagctccgcggggctgctcggcttcaccttgatcatccacccctcctcgtacgggctc 389 |||||||||| ||| |||| ||||||||||| |||||||| || || || ||||||||| Sbjct: 3242 tccagctccgacgggttgcttggcttcaccttaatcatccatccatcttcatacgggctc 3183
>emb|Z70303.1|FAGDCH F.australasica mRNA for H protein Length = 523 Score = 46.1 bits (23), Expect = 0.15 Identities = 110/139 (79%) Strand = Plus / Minus Query: 346 tgctcggcttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccgg 405 |||| ||||||||||| |||||||| || || || ||||||||| ||||||| || | Sbjct: 511 tgcttggcttcaccttaatcatccatccatcttcatacgggctcttattgatcaaaccag 452 Query: 406 gggcctcggacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgt 465 | | || || || ||||||||| ||||| |||| ||| || ||||| || ||||| |||| Sbjct: 451 gagtcttggtcaacttcgagttcacctcaacgatctctccagagatcggggagttaacgt 392 Query: 466 cgctggtggccttcacact 484 | || ||||| || ||||| Sbjct: 391 cactagtggctttgacact 373
>emb|Z37517.1|FBGCSH F.bidentis of gcsH gene encoding H-protein Length = 430 Score = 44.1 bits (22), Expect = 0.58 Identities = 112/142 (78%) Strand = Plus / Minus Query: 346 tgctcggcttcaccttgatcatccacccctcctcgtacgggctcgagttgatcaggccgg 405 |||| ||||||||||| |||||||| || || || ||||||||| ||||||| || | Sbjct: 418 tgcttggcttcaccttaatcatccatccatcttcatacgggctcttattgatcaatccag 359 Query: 406 gggcctcggacagcttcgagttgacctcgacgacctcgccggagatgggcgagttgacgt 465 | | ||||| || ||||||||| ||||| |||| ||| || || || || ||||| || | Sbjct: 358 gagtctcggtcaacttcgagttcacctcaacgatctctccagatatcggggagttaacat 299 Query: 466 cgctggtggccttcacactctc 487 | || ||||| || |||||||| Sbjct: 298 cactagtggctttgacactctc 277
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 527 ggcctccggcagctccacgaac 548 |||||||||||||||||||||| Sbjct: 201060 ggcctccggcagctccacgaac 201039 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 361 tgatcatccacccctcctcgtacgg 385 |||||||||| |||||||||||||| Sbjct: 1440919 tgatcatccagccctcctcgtacgg 1440943
>gb|AF107258.1| Homo sapiens chromosome 21q22.1 PAC 295E05A, complete sequence Length = 154311 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 149307 tttccctgcacaagcttctcttttg 149283
>gb|AF107257.1| Homo sapiens chromosome 21q22.1 PAC L12209, complete sequence Length = 139851 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 21121 tttccctgcacaagcttctcttttg 21097
>ref|XM_362103.1| Magnaporthe grisea 70-15 hypothetical protein (MG04548.4) partial cds Length = 1674 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 cagcaggccctccagctccgc 340 ||||||||||||||||||||| Sbjct: 1389 cagcaggccctccagctccgc 1369
>emb|Z99765.1|FPZ99765 Flaveria pringlei gdcsH gene Length = 3611 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 354 ttcaccttgatcatccacccctcctcgtacgggctcgagttgatc 398 |||||||| |||||||| || || || ||||||||||| |||||| Sbjct: 3262 ttcaccttaatcatccatccgtcttcatacgggctcgaattgatc 3218
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 514 tcaccttcgtgccggcctccggcag 538 ||||| ||||||||||||||||||| Sbjct: 2555911 tcaccgtcgtgccggcctccggcag 2555887
>dbj|BS000176.1| Pan troglodytes chromosome 22 clone:RP43-006O21, map 22, complete sequences Length = 146754 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 21662 tttccctgcacaagcttctcttttg 21638
>dbj|BS000175.1| Pan troglodytes chromosome 22 clone:PTB-091H17, map 22, complete sequences Length = 183155 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 177202 tttccctgcacaagcttctcttttg 177178
>dbj|AP001706.1| Homo sapiens genomic DNA, chromosome 21q, section 50/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 210632 tttccctgcacaagcttctcttttg 210608
>dbj|AP000236.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-355D16, complete sequence Length = 159121 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 30703 tttccctgcacaagcttctcttttg 30679
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 320 cagcaggccctccagctccgcgggg 344 |||||||||||||||| |||||||| Sbjct: 267672 cagcaggccctccagcgccgcgggg 267696
>dbj|AP000196.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B355D16-T1073, segment 2/8, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 28419 tttccctgcacaagcttctcttttg 28443
>dbj|AP000092.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, B335D16-P10G11 region, segment 2/7 Length = 100000 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 tttccctgcacatgcttctcttttg 90 |||||||||||| |||||||||||| Sbjct: 28419 tttccctgcacaagcttctcttttg 28443
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tacacaaacacaagaaaaac 169 |||||||||||||||||||| Sbjct: 709835 tacacaaacacaagaaaaac 709816
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 549 accacctccccgagatggccctgg 572 ||||||| |||||||||||||||| Sbjct: 809936 accacctgcccgagatggccctgg 809913
>ref|XM_746909.1| Aspergillus fumigatus Af293 alcohol dehydrogenase, zinc-containing (Afu4g08240) partial mRNA Length = 1029 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gacctcgacgacctcgccgg 447 |||||||||||||||||||| Sbjct: 219 gacctcgacgacctcgccgg 200
>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence Length = 126187 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 atggttactgaaatggtata 112 |||||||||||||||||||| Sbjct: 125594 atggttactgaaatggtata 125575
>emb|AL732431.19| Human DNA sequence from clone XXyac-36GH4 on chromosome 6 Contains the gene for acid sphingomyelinase-like phosphodiesterase 3a (ASML3A), an H+ transporting mitochondrial F0 complex ATP synthase subunit g (ATP5L) pseudogene and two CpG islands, complete sequence Length = 164746 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgcaagaaccaaagtgcatt 67 |||||||||||||||||||| Sbjct: 1164 tgcaagaaccaaagtgcatt 1145
>emb|AL645811.2| Human DNA sequence from clone RP11-548E19 on chromosome 6 Contains the FABP7 gene for fatty acid binding protein 7, brain (B-FABP) (contains DKFZp547J2313), complete sequence Length = 46912 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgcaagaaccaaagtgcatt 67 |||||||||||||||||||| Sbjct: 46076 tgcaagaaccaaagtgcatt 46057
>emb|AL031730.1|HS301K23 Human DNA sequence from clone RP1-301K23 on chromosome 1p35.1-36.21 Contains part of the gene for a novel protein (LOC255104) (FLJ45636), complete sequence Length = 48832 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 tgccggcctccggcagctcc 542 |||||||||||||||||||| Sbjct: 14210 tgccggcctccggcagctcc 14229
>emb|BX927153.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 6/10 Length = 349584 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gacctcgacgacctcgccgg 447 |||||||||||||||||||| Sbjct: 272419 gacctcgacgacctcgccgg 272400
>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5 Length = 348986 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tggtttaattattgtagata 220 |||||||||||||||||||| Sbjct: 198928 tggtttaattattgtagata 198947
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ttggtgtacttggccgagtc 319 |||||||||||||||||||| Sbjct: 119028 ttggtgtacttggccgagtc 119009
>emb|CR407317.1| Gallus gallus finished cDNA, clone ChEST641e22 Length = 807 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 agctccgcggggctgctcgg 352 |||||||||||||||||||| Sbjct: 215 agctccgcggggctgctcgg 196
>ref|XM_571991.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 1592 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tacacaaacacaagaaaaac 169 |||||||||||||||||||| Sbjct: 199 tacacaaacacaagaaaaac 218
>gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete sequence Length = 114169 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cagtgcttggtgtacttggc 313 |||||||||||||||||||| Sbjct: 86596 cagtgcttggtgtacttggc 86615
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 caaaaggaatgataagcgag 262 |||||||||||||||||||| Sbjct: 27528 caaaaggaatgataagcgag 27547
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gacctcgacgacctcgccgg 447 |||||||||||||||||||| Sbjct: 2047811 gacctcgacgacctcgccgg 2047792
>gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, complete sequence Length = 177950 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 ggccgggggcctcggacagc 419 |||||||||||||||||||| Sbjct: 50935 ggccgggggcctcggacagc 50916
>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete sequence Length = 217552 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttgtcatggttactgaaatg 107 |||||||||||||||||||| Sbjct: 77156 ttgtcatggttactgaaatg 77175
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 426 ttgacctcgacgacctcgccggag 449 |||||||||||||| ||||||||| Sbjct: 5460511 ttgacctcgacgacttcgccggag 5460534
>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence Length = 129690 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tttccctgcacatgcttctc 85 |||||||||||||||||||| Sbjct: 17108 tttccctgcacatgcttctc 17127
>dbj|AK061134.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-B01, full insert sequence Length = 1195 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gacctcgacgacctcgccgg 447 |||||||||||||||||||| Sbjct: 296 gacctcgacgacctcgccgg 277
>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the complete sequence Length = 232050 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 caaaaggaatgataagcgag 262 |||||||||||||||||||| Sbjct: 16435 caaaaggaatgataagcgag 16454
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gacctcgacgacctcgccgg 447 |||||||||||||||||||| Sbjct: 3695628 gacctcgacgacctcgccgg 3695647
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 agcttcgagttgacctcgac 436 |||||||||||||||||||| Sbjct: 674411 agcttcgagttgacctcgac 674392
>gb|U79768.1|MCU79768 Mesembryanthemum crystallinum glycine cleavage system protein H precursor, mRNA, complete cds Length = 773 Score = 40.1 bits (20), Expect = 9.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 447 gagatgggcgagttgacgtcgctggtggccttcacactctccac 490 |||||||| |||||||| || || || || |||||||||||||| Sbjct: 361 gagatgggggagttgacatcacttgtagctttcacactctccac 318
>gb|AC034192.5| Homo sapiens chromosome 3 clone RP11-416N8 map 3p, complete sequence Length = 176223 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ggtttaattattgtagataa 221 |||||||||||||||||||| Sbjct: 120000 ggtttaattattgtagataa 120019
>emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-126I9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163784 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaacacaagaaaaactggaa 174 |||||||||||||||||||| Sbjct: 110426 aaacacaagaaaaactggaa 110445 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,897,349 Number of Sequences: 3902068 Number of extensions: 5897349 Number of successful extensions: 108008 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107101 Number of HSP's gapped (non-prelim): 898 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)