>YD27_SCHPO (Q10255) Hypothetical protein C56F8.07 in chromosome I|
          Length = 507

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = -3

Query: 539 AVQNQPSTGFAPVVEPP-----ESSIAMLVSMGFDSNAARQALMRARNDINVATNILL 381
           A  N+ S+    +V PP      S IA LVSMGFD   A QAL  A  D++VA + LL
Sbjct: 450 APNNEGSSNPPSLVNPPTDPGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 507

>MUD1_SCHPO (Q10256) UBA-domain protein mud1 (UBA-domain-containing protein 1)|
           (DNA-damage-inducible protein DDI1 homolog)
          Length = 332

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = -3

Query: 539 AVQNQPSTGFAPVVEPP-----ESSIAMLVSMGFDSNAARQALMRARNDINVATNILL 381
           A  N+ S+    +V PP      S IA LVSMGFD   A QAL  A  D++VA + LL
Sbjct: 275 APNNEGSSNPPSLVNPPTDPGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 332

>TDRD3_MOUSE (Q91W18) Tudor domain-containing protein 3|
          Length = 650

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 488 ESSIAMLVSMGFDSNAARQALMRARNDINVATNILLEA 375
           E ++  +  MGF   A+RQALM   N++  A N+LL +
Sbjct: 196 EKALKHITEMGFSKEASRQALMDNANNLEAALNVLLNS 233

>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 13)
           (Ubiquitin-specific-processing protease 13)
           (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3)
          Length = 863

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 497 EPPESSIAMLVSMGFDSNAARQALMRARNDINVA 396
           +PPE  +A++ SMGF  N A QAL    N++  A
Sbjct: 727 QPPEEIVAIITSMGFQRNQAIQALRATNNNLERA 760

>TDRD3_HUMAN (Q9H7E2) Tudor domain-containing protein 3|
          Length = 651

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 488 ESSIAMLVSMGFDSNAARQALMRARNDINVATNILL 381
           E ++  +  MGF   A+RQALM   N++  A N+LL
Sbjct: 196 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 231

>NUB1_BOVIN (Q8MJ87) NEDD8 ultimate buster 1 (Fragment)|
          Length = 221

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 494 PPESSIAMLVSMGFDSNAARQALMRARNDINVATNILLEAQSH*ADSLQL 345
           P +  I  LV MGFD+ AA+ AL   R+++ +A   L+         LQL
Sbjct: 96  PSQEKIDQLVYMGFDAVAAKAALRVFRDNVQLAAQTLVHNGGRLPPDLQL 145

>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 5)
           (Ubiquitin-specific-processing protease 5)
           (Deubiquitinating enzyme 5) (Isopeptidase T)
          Length = 858

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 524 PSTGFAPVVEPPESSIAMLVSMGFDSNAARQALMRARNDINVATN 390
           P +  A    PPE  +  +VSMGF  + A +AL    N +  A +
Sbjct: 713 PGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVD 757

>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 5)
           (Ubiquitin-specific-processing protease 5)
           (Deubiquitinating enzyme 5) (Isopeptidase T)
          Length = 858

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 524 PSTGFAPVVEPPESSIAMLVSMGFDSNAARQALMRARNDINVATN 390
           P +  A    PPE  +  +VSMGF  + A +AL    N +  A +
Sbjct: 713 PGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVD 757

>SERR_DROME (P18168) Serrate protein precursor (Protein beaded)|
          Length = 1404

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +3

Query: 135  LTCDHTNCSKYFPAS*AVN*EGACSLFQTMAAASQ*IHQSTMSSPICCRMHGEQPFMSRY 314
            L C   NC K  P S + N  G C   +    A   + ++ +SSP  C + G+   +   
Sbjct: 1008 LWCGLPNCYKVDPLSKSSNLSGVCKQHEVCVPA---LSETCLSSP--CNVRGDCRALEPS 1062

Query: 315  NQFDPPYLSAK 347
             +  PP L AK
Sbjct: 1063 RRVAPPRLPAK 1073

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 23/82 (28%), Positives = 31/82 (37%)
 Frame = -2

Query: 681 SQCAWYPPEEASTDCCIIFRKIFCASFSKLISAVKKSCWKCAFAYRPCCSEPAVYWVCSC 502
           SQC+ Y P      CC       C S     S  K SC + +   +PCCS+ +    C C
Sbjct: 127 SQCSCYKP------CCC---SSGCGSSCCQSSCCKPSCSQSS-CCKPCCSQSSCCKPCCC 176

Query: 501 CGAPGVLHCYAGIDGL*QQCCE 436
               G   C +        CC+
Sbjct: 177 SSGCGSSCCQS-------SCCK 191


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,205,964
Number of Sequences: 219361
Number of extensions: 1932445
Number of successful extensions: 4764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4763
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)