ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasda04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 4e-39
2dbj|AK073347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 4e-39
3ref|NM_188033.1| Oryza sativa (japonica cultivar-group), Ozsa845... 167 6e-38
4gb|BT018758.1| Zea mays clone EL01N0523F03.d mRNA sequence 167 6e-38
5gb|AY112058.1| Zea mays CL37599_1 mRNA sequence 117 5e-23
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
7dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
8dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 113 8e-22
9gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-6... 56 2e-04
10gb|AY085810.1| Arabidopsis thaliana clone 18436 mRNA, complete s... 48 0.040
11gb|AF539999.1| Mamestra configurata nucleopolyhedrovirus A 90/4,... 42 2.4
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.4
13gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genom... 42 2.4
14gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genom... 42 2.4
15gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, c... 42 2.4
16ref|XM_680149.1| PREDICTED: Danio rerio similar to putative prot... 42 2.4
17ref|XM_687353.1| PREDICTED: Danio rerio similar to MGC80777 prot... 42 2.4
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
19gb|AC087612.6| Homo sapiens chromosome 15, clone RP11-69G7, comp... 42 2.4
20ref|NM_115533.2| Arabidopsis thaliana unknown protein AT3G56740 ... 40 9.7
21gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosom... 40 9.7
22gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 9.7
23gb|AC135117.3| Mus musculus BAC clone RP24-444P19 from chromosom... 40 9.7
24gb|AC144938.3| Mus musculus BAC clone RP24-129H18 from chromosom... 40 9.7
25gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, co... 40 9.7
26ref|XM_535022.2| PREDICTED: Canis familiaris similar to actin-bi... 40 9.7
27ref|XM_859834.1| PREDICTED: Canis familiaris similar to actin-bi... 40 9.7
28ref|XM_859813.1| PREDICTED: Canis familiaris similar to actin-bi... 40 9.7
29ref|XM_859794.1| PREDICTED: Canis familiaris similar to actin-bi... 40 9.7
30emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on ch... 40 9.7
31emb|AL450105.17| Human DNA sequence from clone RP11-519C17 on ch... 40 9.7
32emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chr... 40 9.7
33emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287... 40 9.7
34gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, com... 40 9.7
35emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BA... 40 9.7
36emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 ... 40 9.7
37dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 9.7
38gb|AC153142.3| Mus musculus BAC clone RP23-296H17 from chromosom... 40 9.7
39emb|BX822432.1|CNS0A61F Arabidopsis thaliana Full-length cDNA Co... 40 9.7
40emb|BX823927.1|CNS0A5G9 Arabidopsis thaliana Full-length cDNA Co... 40 9.7
41emb|BX824979.1|CNS0A4O2 Arabidopsis thaliana Full-length cDNA Co... 40 9.7
42gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C... 40 9.7
43gb|BT005215.1| Arabidopsis thaliana At3g56740 mRNA, complete cds 40 9.7
44gb|AC027033.3|AC027033 Arabidopsis thaliana chromosome 1 BAC F21... 40 9.7
45dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 9.7
46emb|AL831780.12| Mouse DNA sequence from clone RP23-394B8 on chr... 40 9.7
47dbj|AP000736.3| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.7
48gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, comple... 40 9.7
49gb|AC004386.1|AC004386 Homo Sapiens Chromosome X clone bWXD691, ... 40 9.7
50emb|AL929247.5| Zebrafish DNA sequence from clone CH211-152J7 in... 40 9.7 
>dbj|AK105874.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B06, full
            insert sequence
          Length = 1530

 Score =  170 bits (86), Expect = 4e-39
 Identities = 281/346 (81%)
 Strand = Plus / Minus

                                                                        
Query: 361  gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 420
            |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 1160 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 1101

                                                                        
Query: 421  cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 480
            ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 1100 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 1041

                                                                        
Query: 481  gaggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagca 540
            || || || ||||||||||| |||||||| || ||||  | | | | |||||| ||||||
Sbjct: 1040 gaagattctgggggctccacgacaggagcgaatccagatggctgattgttctgcacagca 981

                                                                        
Query: 541  cggcctgtatgcgaaggcacatttccaacaagacttcttgacggccgagatgagcttgct 600
            |||| |||| | |||  ||  ||||| || ||||| || || |||| |||||| | | | 
Sbjct: 980  cggcttgtacgagaactcatgtttccgaccagactcctggagggcctagatgaacctccc 921

                                                                        
Query: 601  gaaggaggcgcaaaaaatcttgcgaaaaatgatgcaacaatctgtggaagcttcctccgg 660
            |||| ||| || |||| |||||||||||||||||||| || |||||| | |||| ||| |
Sbjct: 920  gaagaaggtgcgaaaattcttgcgaaaaatgatgcaataacctgtggcatcttcatcctg 861

                                                          
Query: 661  cggataccaagcacattgagacgatagagcgagccggcaatcagac 706
            ||||| |||||||| || ||||||||||| || || ||||||||||
Sbjct: 860  cggatgccaagcacgttcagacgatagagagaaccagcaatcagac 815



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 39   aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 94
            |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 1496 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 1441
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>dbj|AK073347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L23, full
            insert sequence
          Length = 1499

 Score =  170 bits (86), Expect = 4e-39
 Identities = 281/346 (81%)
 Strand = Plus / Minus

                                                                        
Query: 361  gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 420
            |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 1138 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 1079

                                                                        
Query: 421  cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 480
            ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 1078 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 1019

                                                                        
Query: 481  gaggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagca 540
            || || || ||||||||||| |||||||| || ||||  | | | | |||||| ||||||
Sbjct: 1018 gaagattctgggggctccacgacaggagcgaatccagatggctgattgttctgcacagca 959

                                                                        
Query: 541  cggcctgtatgcgaaggcacatttccaacaagacttcttgacggccgagatgagcttgct 600
            |||| |||| | |||  ||  ||||| || ||||| || || |||| |||||| | | | 
Sbjct: 958  cggcttgtacgagaactcatgtttccgaccagactcctggagggcctagatgaacctccc 899

                                                                        
Query: 601  gaaggaggcgcaaaaaatcttgcgaaaaatgatgcaacaatctgtggaagcttcctccgg 660
            |||| ||| || |||| |||||||||||||||||||| || |||||| | |||| ||| |
Sbjct: 898  gaagaaggtgcgaaaattcttgcgaaaaatgatgcaataacctgtggcatcttcatcctg 839

                                                          
Query: 661  cggataccaagcacattgagacgatagagcgagccggcaatcagac 706
            ||||| |||||||| || ||||||||||| || || ||||||||||
Sbjct: 838  cggatgccaagcacgttcagacgatagagagaaccagcaatcagac 793



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 39   aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 94
            |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 1474 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 1419
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>ref|NM_188033.1| Oryza sativa (japonica cultivar-group), Ozsa8453 predicted mRNA
          Length = 879

 Score =  167 bits (84), Expect = 6e-38
 Identities = 279/344 (81%)
 Strand = Plus / Minus

                                                                       
Query: 363 tcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcg 422
           |||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||||
Sbjct: 879 tcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggctcg 820

                                                                       
Query: 423 catgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatgga 482
           ||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || ||
Sbjct: 819 cattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgattga 760

                                                                       
Query: 483 ggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagcacg 542
            || || ||||||||||| |||||||| || ||||  | | | | |||||| ||||||||
Sbjct: 759 agattctgggggctccacgacaggagcgaatccagatggctgattgttctgcacagcacg 700

                                                                       
Query: 543 gcctgtatgcgaaggcacatttccaacaagacttcttgacggccgagatgagcttgctga 602
           || |||| | |||  ||  ||||| || ||||| || || |||| |||||| | | | ||
Sbjct: 699 gcttgtacgagaactcatgtttccgaccagactcctggagggcctagatgaacctcccga 640

                                                                       
Query: 603 aggaggcgcaaaaaatcttgcgaaaaatgatgcaacaatctgtggaagcttcctccggcg 662
           || ||| || |||| |||||||||||||||||||| || |||||| | |||| ||| |||
Sbjct: 639 agaaggtgcgaaaattcttgcgaaaaatgatgcaataacctgtggcatcttcatcctgcg 580

                                                       
Query: 663 gataccaagcacattgagacgatagagcgagccggcaatcagac 706
           ||| |||||||| || ||||||||||| || || ||||||||||
Sbjct: 579 gatgccaagcacgttcagacgatagagagaaccagcaatcagac 536
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>gb|BT018758.1| Zea mays clone EL01N0523F03.d mRNA sequence
          Length = 1384

 Score =  167 bits (84), Expect = 6e-38
 Identities = 279/344 (81%)
 Strand = Plus / Minus

                                                                        
Query: 363  tcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcg 422
            |||||||||||| ||||| ||||||||||| || || || ||||| |||||||| || | 
Sbjct: 1063 tcaatgagactgtgcttccagtaggatgttcgttgccacgttgatgtcatttctagccct 1004

                                                                        
Query: 423  catgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatgga 482
            || ||| ||||| || ||   |||||  ||||||||||| || ||||||||||||| |||
Sbjct: 1003 cacgagtgcctgccttgcgttattgccatcaaagcccattgagaccagcatagcaacgga 944

                                                                        
Query: 483  ggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagcacg 542
            |||||| || |||||||| | ||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 943  ggactctggaggctccacgataggtgcaaatccagttgatggctgattctgaacagcacg 884

                                                                        
Query: 543  gcctgtatgcgaaggcacatttccaacaagacttcttgacggccgagatgagcttgctga 602
            |||| |||| || ||    ||||||||||||||  | || || ||||||| |||| ||| 
Sbjct: 883  gcctctatgggacggtgtgtttccaacaagactcgtggaggggcgagatgtgcttcctgg 824

                                                                        
Query: 603  aggaggcgcaaaaaatcttgcgaaaaatgatgcaacaatctgtggaagcttcctccggcg 662
             | ||| || ||| ||||||| |||||||||| || || ||||||||||||| ||  |||
Sbjct: 823  ggaaggggcgaaatatcttgcaaaaaatgatgaaataacctgtggaagcttcatcttgcg 764

                                                        
Query: 663  gataccaagcacattgagacgatagagcgagccggcaatcagac 706
            ||| || |||||||| ||||||||||| || || |||| |||||
Sbjct: 763  gatgccgagcacatttagacgatagagagaaccagcaaccagac 720
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>gb|AY112058.1| Zea mays CL37599_1 mRNA sequence
          Length = 838

 Score =  117 bits (59), Expect = 5e-23
 Identities = 274/345 (79%), Gaps = 2/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 363 tcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcg 422
           |||||||||||| ||||| ||||||||||| || || || ||||| |||||||| || | 
Sbjct: 243 tcaatgagactgtgcttccagtaggatgttcgttgccacgttgatgtcatttctagccct 302

                                                                       
Query: 423 catgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatgga 482
           || ||| ||||| || ||   |||||  ||||||||||| || ||||||||||||| |||
Sbjct: 303 cacgagtgcctgccttgcgttattgccatcaaagcccattgagaccagcatagcaacgga 362

                                                                       
Query: 483 ggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagc-ac 541
           |||||| || |||||||| | ||| ||||| ||||| || ||||| |||||| |||| ||
Sbjct: 363 ggactctggaggctccacgataggtgcaaatccagttgatggctgattctga-cagccac 421

                                                                       
Query: 542 ggcctgtatgcgaaggcacatttccaacaagacttcttgacggccgagatgagcttgctg 601
           ||||| |||| || ||    |||||||||||||| || || || ||||||| |||| |||
Sbjct: 422 ggcctctatgggacggtgtgtttccaacaagactcctggaggggcgagatgtgcttcctg 481

                                                                       
Query: 602 aaggaggcgcaaaaaatcttgcgaaaaatgatgcaacaatctgtggaagcttcctccggc 661
             | ||| || ||| |||||||      ||||| || || ||||||||||||| ||  ||
Sbjct: 482 gggaaggggcgaaatatcttgcnnnnnntgatgaaataacctgtggaagcttcatcttgc 541

                                                        
Query: 662 ggataccaagcacattgagacgatagagcgagccggcaatcagac 706
           |||| || |||||||| ||||||||||| || || |||| |||||
Sbjct: 542 ggatgccgagcacatttagacgatagagagaaccagcaaccagac 586
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  113 bits (57), Expect = 8e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                           
Query: 361     gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 420
               |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 9262857 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 9262798

                                                                           
Query: 421     cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 480
               ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 9262797 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 9262738

                                            
Query: 481     gaggactccgggggctccacaacaggagc 509
               || || || ||||||||||| ||||||||
Sbjct: 9262737 gaagattctgggggctccacgacaggagc 9262709



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                       
Query: 39      aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 94
               |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 9263193 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 9263138



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                       
Query: 651     cttcctccggcggataccaagcacattgagacgatagagcgagccggcaatcagac 706
               |||| ||| |||||| |||||||| || ||||||||||| || || ||||||||||
Sbjct: 9261386 cttcatcctgcggatgccaagcacgttcagacgatagagagaaccagcaatcagac 9261331



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 613     aaaaatcttgcgaaaaatgatgcaacaatctgtgg 647
               |||| |||||||||||||||||||| || ||||||
Sbjct: 9262059 aaaattcttgcgaaaaatgatgcaataacctgtgg 9262025
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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score =  113 bits (57), Expect = 8e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                         
Query: 361   gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 420
             |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 39451 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 39392

                                                                         
Query: 421   cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 480
             ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 39391 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 39332

                                          
Query: 481   gaggactccgggggctccacaacaggagc 509
             || || || ||||||||||| ||||||||
Sbjct: 39331 gaagattctgggggctccacgacaggagc 39303



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 39    aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 94
             |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 39787 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 39732



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 651   cttcctccggcggataccaagcacattgagacgatagagcgagccggcaatcagac 706
             |||| ||| |||||| |||||||| || ||||||||||| || || ||||||||||
Sbjct: 37980 cttcatcctgcggatgccaagcacgttcagacgatagagagaaccagcaatcagac 37925



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 613   aaaaatcttgcgaaaaatgatgcaacaatctgtgg 647
             |||| |||||||||||||||||||| || ||||||
Sbjct: 38653 aaaattcttgcgaaaaatgatgcaataacctgtgg 38619
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>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0011D01
          Length = 168655

 Score =  113 bits (57), Expect = 8e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                          
Query: 361    gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 420
              |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 163239 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 163180

                                                                          
Query: 421    cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 480
              ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 163179 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 163120

                                           
Query: 481    gaggactccgggggctccacaacaggagc 509
              || || || ||||||||||| ||||||||
Sbjct: 163119 gaagattctgggggctccacgacaggagc 163091



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                      
Query: 39     aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 94
              |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 163575 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 163520



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 651    cttcctccggcggataccaagcacattgagacgatagagcgagccggcaatcagac 706
              |||| ||| |||||| |||||||| || ||||||||||| || || ||||||||||
Sbjct: 161768 cttcatcctgcggatgccaagcacgttcagacgatagagagaaccagcaatcagac 161713



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 613    aaaaatcttgcgaaaaatgatgcaacaatctgtgg 647
              |||| |||||||||||||||||||| || ||||||
Sbjct: 162441 aaaattcttgcgaaaaatgatgcaataacctgtgg 162407
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>gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-61j12, complete
             sequence
          Length = 116517

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 382   agtaggatgtttgtcgctacattgatatcatttctggctcgcatgagggcctgtctcgca 441
             ||||||||||||||||| ||||| |  |||||||||||  |||  ||||| ||||| |||
Sbjct: 29636 agtaggatgtttgtcgccacattcacgtcatttctggcctgcactagggcttgtctggca 29695

                                 
Query: 442   gcattgctgtcaaagcccat 461
             | ||| |||||||| |||||
Sbjct: 29696 gaattcctgtcaaatcccat 29715
to top
>gb|AY085810.1| Arabidopsis thaliana clone 18436 mRNA, complete sequence
          Length = 1393

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 81/100 (81%)
 Strand = Plus / Minus

                                                                        
Query: 370  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
            ||||| ||||| || ||||||||||| ||  | |||| ||||||||||||  |||  || 
Sbjct: 1135 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcatttctggcgtgcacaagc 1076

                                                    
Query: 430  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1075 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 1036
to top
>gb|AF539999.1| Mamestra configurata nucleopolyhedrovirus A 90/4, complete genome
          Length = 153656

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 625    aaaaatgatgcaacaatctgt 645
              |||||||||||||||||||||
Sbjct: 134538 aaaaatgatgcaacaatctgt 134558
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 610      gcaaaaaatcttgcgaaaaatgatg 634
                ||||||||||||| |||||||||||
Sbjct: 24210772 gcaaaaaatcttgagaaaaatgatg 24210796
to top
>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete
             sequence
          Length = 140980

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 610   gcaaaaaatcttgcgaaaaatgatg 634
             ||||||||||||| |||||||||||
Sbjct: 13060 gcaaaaaatcttgagaaaaatgatg 13036
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>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete
              sequence
          Length = 171664

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 610    gcaaaaaatcttgcgaaaaatgatg 634
              ||||||||||||| |||||||||||
Sbjct: 169852 gcaaaaaatcttgagaaaaatgatg 169828
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>gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, complete sequence
          Length = 179402

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 429    ggcctgtctcgcagcattgctgtca 453
              |||||||||| ||||||||||||||
Sbjct: 151438 ggcctgtctcccagcattgctgtca 151462
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>ref|XM_680149.1| PREDICTED: Danio rerio similar to putative protein derived from
           vestibule-1 (LOC557144), mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 431 cctgtctcgcagcattgctgt 451
           |||||||||||||||||||||
Sbjct: 675 cctgtctcgcagcattgctgt 695
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>ref|XM_687353.1| PREDICTED: Danio rerio similar to MGC80777 protein (LOC563993), mRNA
          Length = 3541

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 497  ccacaacaggagcaaacccag 517
            |||||||||||||||||||||
Sbjct: 2163 ccacaacaggagcaaacccag 2143
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 610      gcaaaaaatcttgcgaaaaatgatg 634
                ||||||||||||| |||||||||||
Sbjct: 24128241 gcaaaaaatcttgagaaaaatgatg 24128265
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>gb|AC087612.6| Homo sapiens chromosome 15, clone RP11-69G7, complete sequence
          Length = 145405

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 429    ggcctgtctcgcagcattgctgtca 453
              |||||||||| ||||||||||||||
Sbjct: 126689 ggcctgtctcccagcattgctgtca 126665
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>ref|NM_115533.2| Arabidopsis thaliana unknown protein AT3G56740 mRNA, complete cds
          Length = 1801

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 370  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1135 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1076

                                                    
Query: 430  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1075 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 1036
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>gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosome 6, complete sequence
          Length = 222024

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     ggctgcaaaacaattttaca 47
              ||||||||||||||||||||
Sbjct: 128033 ggctgcaaaacaattttaca 128014
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 602     aaggaggcgcaaaaaatctt 621
               ||||||||||||||||||||
Sbjct: 1981745 aaggaggcgcaaaaaatctt 1981726
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>gb|AC135117.3| Mus musculus BAC clone RP24-444P19 from chromosome 6, complete sequence
          Length = 166651

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ggctgcaaaacaattttaca 47
             ||||||||||||||||||||
Sbjct: 28053 ggctgcaaaacaattttaca 28034
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>gb|AC144938.3| Mus musculus BAC clone RP24-129H18 from chromosome 18, complete sequence
          Length = 207182

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    tcatgtccagatataaccag 320
              ||||||||||||||||||||
Sbjct: 152504 tcatgtccagatataaccag 152523
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>gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, complete sequence
          Length = 227171

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    ggagcatgttcacttttccaaacc 221
              |||||||||||| |||||||||||
Sbjct: 100903 ggagcatgttcatttttccaaacc 100880
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>ref|XM_535022.2| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 2 (LOC477828), mRNA
          Length = 6028

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  acatttccaacaagacttct 578
            ||||||||||||||||||||
Sbjct: 5984 acatttccaacaagacttct 5965
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>ref|XM_859834.1| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 5 (LOC477828), mRNA
          Length = 6076

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  acatttccaacaagacttct 578
            ||||||||||||||||||||
Sbjct: 6032 acatttccaacaagacttct 6013
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>ref|XM_859813.1| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 4 (LOC477828), mRNA
          Length = 5054

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  acatttccaacaagacttct 578
            ||||||||||||||||||||
Sbjct: 5010 acatttccaacaagacttct 4991
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>ref|XM_859794.1| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 3 (LOC477828), mRNA
          Length = 5824

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  acatttccaacaagacttct 578
            ||||||||||||||||||||
Sbjct: 5780 acatttccaacaagacttct 5761
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>emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on chromosome 10 Contains the
              3' end of gene LOC170394, four novel genes, gene LOC170393,
              the 5' end of the INPP5A gene for inositol
              polyphosphate-5-phosphatase 40kDa and five CpG islands,
              complete sequence
          Length = 149579

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    atttatcagcaaagttgcag 353
              ||||||||||||||||||||
Sbjct: 108133 atttatcagcaaagttgcag 108114
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>emb|AL450105.17| Human DNA sequence from clone RP11-519C17 on chromosome 9 Contains the
             5' UTR of the gene for a novel protein similar to
             basonuclin (BNC) (FLJ34928) and a CpG island, complete
             sequence
          Length = 161506

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    actatgattgaaatgtttat 66
             ||||||||||||||||||||
Sbjct: 47912 actatgattgaaatgtttat 47893
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>emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chromosome 13q12.3-14.11
              Contains a ribosomal protein S12 (RPS12) pseudogene and a
              CpG island, complete sequence
          Length = 182178

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 589    gatgagcttgctgaaggagg 608
              ||||||||||||||||||||
Sbjct: 175522 gatgagcttgctgaaggagg 175541
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>emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287B20 on chromosome 20 Contains
             part of the gene for KIAA1272 for a protein similar to rat
             tulip proteins 1 and 2, complete sequence
          Length = 168545

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    gcaaaacaattttacactat 51
             ||||||||||||||||||||
Sbjct: 58538 gcaaaacaattttacactat 58557
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>gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, complete sequence
          Length = 172709

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tcacctatcctacaagctga 89
             ||||||||||||||||||||
Sbjct: 20407 tcacctatcctacaagctga 20426
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>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16
          Length = 107271

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                         
Query: 370   gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
             ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 33799 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 33740

                                                     
Query: 430   gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
             ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 33739 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 33700
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>emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 in linkage group 2,
              complete sequence
          Length = 146757

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ttcacttttccaaaccatgg 225
              ||||||||||||||||||||
Sbjct: 145476 ttcacttttccaaaccatgg 145495
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 49      tatgattgaaatgtttatgtatca 72
               |||||||||||||||| |||||||
Sbjct: 1916524 tatgattgaaatgtttctgtatca 1916547
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>gb|AC153142.3| Mus musculus BAC clone RP23-296H17 from chromosome 18, complete
             sequence
          Length = 212451

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   tcatgtccagatataaccag 320
             ||||||||||||||||||||
Sbjct: 10141 tcatgtccagatataaccag 10122
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>emb|BX822432.1|CNS0A61F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB37ZH10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1354

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 370  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1097 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1038

                                                    
Query: 430  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1037 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 998
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>emb|BX823927.1|CNS0A5G9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS93ZE10 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1351

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 370  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1070 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1011

                                                    
Query: 430  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1010 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 971
to top
>emb|BX824979.1|CNS0A4O2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH87ZA11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1350

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 370  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1114 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1055

                                                    
Query: 430  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1054 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 1015
to top
>gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C2 map 3p, complete sequence
          Length = 181164

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    acaattttacactatgattgaaat 60
             |||||||| |||||||||||||||
Sbjct: 15034 acaattttccactatgattgaaat 15057
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>gb|BT005215.1| Arabidopsis thaliana At3g56740 mRNA, complete cds
          Length = 882

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                       
Query: 370 gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 429
           ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 875 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 816

                                                   
Query: 430 gcctgtctcgcagcattgctgtcaaagcccatcgatacca 469
           ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 815 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 776
to top
>gb|AC027033.3|AC027033 Arabidopsis thaliana chromosome 1 BAC F21N10 genomic sequence, complete
             sequence
          Length = 98017

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   gcgaaggcacatttccaaca 570
             ||||||||||||||||||||
Sbjct: 37496 gcgaaggcacatttccaaca 37515
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 604    ggaggcgcaaaaaatcttgcgaaa 627
              |||||||||||||||||| |||||
Sbjct: 233966 ggaggcgcaaaaaatctttcgaaa 233989
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>emb|AL831780.12| Mouse DNA sequence from clone RP23-394B8 on chromosome 2, complete
              sequence
          Length = 173444

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 424    atgagggcctgtctcgcagcattgctgtcaaa 455
              |||| ||||||||| ||||| |||||||||||
Sbjct: 127504 atgaaggcctgtcttgcagccttgctgtcaaa 127473
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>dbj|AP000736.3| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E7
          Length = 81580

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   gcgaaggcacatttccaaca 570
             ||||||||||||||||||||
Sbjct: 50605 gcgaaggcacatttccaaca 50624
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>gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, complete sequence
          Length = 246636

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    ggagcatgttcacttttccaaacc 221
              |||||||||||| |||||||||||
Sbjct: 218359 ggagcatgttcatttttccaaacc 218382
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>gb|AC004386.1|AC004386 Homo Sapiens Chromosome X clone bWXD691, complete sequence
          Length = 172657

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     agtgctaatggaactgattt 26
             ||||||||||||||||||||
Sbjct: 21889 agtgctaatggaactgattt 21908
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>emb|AL929247.5| Zebrafish DNA sequence from clone CH211-152J7 in linkage group 3,
             complete sequence
          Length = 145564

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ttcacttttccaaaccatgg 225
             ||||||||||||||||||||
Sbjct: 34409 ttcacttttccaaaccatgg 34390


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,644,434
Number of Sequences: 3902068
Number of extensions: 5644434
Number of successful extensions: 100442
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100165
Number of HSP's gapped (non-prelim): 264
length of query: 706
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 683
effective length of database: 17,143,297,704
effective search space: 11708872331832
effective search space used: 11708872331832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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