ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, com... 40 0.58
2ref|XM_588265.2| PREDICTED: Bos taurus solute carrier family 38,... 40 0.58
3gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, com... 40 0.58
4gb|BC074608.1| Xenopus tropicalis MGC69187 protein, mRNA (cDNA c... 38 2.3
5emb|CR974569.7| Pig DNA sequence from clone CH242-255C19 on chro... 38 2.3
6gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, com... 38 2.3
7gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosom... 38 2.3
8gb|AC022405.5|AC022405 Homo sapiens chromosome 15 clone CTD-2339... 38 2.3
9ref|NM_001004826.1| Xenopus tropicalis MGC69187 protein (MGC6918... 38 2.3
10emb|CR762011.2| Xenopus tropicalis finished cDNA, clone TEgg024a05 38 2.3
11dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:R... 38 2.3
12gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complet... 38 2.3
13gb|AY075119.1| Uncultured marine bacterium clone I2 maturase gen... 36 9.1
14ref|XM_543722.2| PREDICTED: Canis familiaris similar to solute c... 36 9.1
15gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CI... 36 9.1
16gb|AC125352.4| Mus musculus BAC clone RP23-451M13 from chromosom... 36 9.1
17emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on ch... 36 9.1
18emb|AL356259.11| Human DNA sequence from clone RP11-385E5 on chr... 36 9.1
19gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, comp... 36 9.1
20gb|DP000036.1| Papio anubis target 106 genomic scaffold 36 9.1
21gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomi... 36 9.1
22gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, comp... 36 9.1
23emb|CR354540.12| Zebrafish DNA sequence from clone DKEY-235K4 in... 36 9.1

>gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, complete sequence
          Length = 232085

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    tgatttgcctgtttgtaggcaaaa 59
             |||||| |||||||||||||||||
Sbjct: 39982 tgatttacctgtttgtaggcaaaa 39959



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>ref|XM_588265.2| PREDICTED: Bos taurus solute carrier family 38, member 2 (SLC38A2),
            mRNA
          Length = 4822

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 33   aaatgatttgcctgtttgtaggca 56
            ||||||||||||| ||||||||||
Sbjct: 2507 aaatgatttgcctttttgtaggca 2530



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>gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, complete sequence
          Length = 159548

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    tgatttgcctgtttgtaggcaaaa 59
             |||||| |||||||||||||||||
Sbjct: 77802 tgatttacctgtttgtaggcaaaa 77779



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>gb|BC074608.1| Xenopus tropicalis MGC69187 protein, mRNA (cDNA clone MGC:69187
           IMAGE:5307185), complete cds
          Length = 1346

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  aaatgatttgcctgtttgt 51
           |||||||||||||||||||
Sbjct: 459 aaatgatttgcctgtttgt 477



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>emb|CR974569.7| Pig DNA sequence from clone CH242-255C19 on chromosome 17, complete
             sequence
          Length = 104107

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    aaatgatttgcctgtttgt 51
             |||||||||||||||||||
Sbjct: 14859 aaatgatttgcctgtttgt 14841



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>gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, complete sequence
          Length = 232691

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     tgcctgtttgtaggcaaaa 59
              |||||||||||||||||||
Sbjct: 172021 tgcctgtttgtaggcaaaa 172003



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>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete
             sequence
          Length = 178904

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    aaatgatttgcctgtttgt 51
             |||||||||||||||||||
Sbjct: 77657 aaatgatttgcctgtttgt 77675



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>gb|AC022405.5|AC022405 Homo sapiens chromosome 15 clone CTD-2339L15 map 15q14, complete
             sequence
          Length = 111035

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    gatttgcctgtttgtaggc 55
             |||||||||||||||||||
Sbjct: 56562 gatttgcctgtttgtaggc 56580



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>ref|NM_001004826.1| Xenopus tropicalis MGC69187 protein (MGC69187), mRNA
          Length = 1346

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  aaatgatttgcctgtttgt 51
           |||||||||||||||||||
Sbjct: 459 aaatgatttgcctgtttgt 477



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>emb|CR762011.2| Xenopus tropicalis finished cDNA, clone TEgg024a05
          Length = 1299

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  aaatgatttgcctgtttgt 51
           |||||||||||||||||||
Sbjct: 416 aaatgatttgcctgtttgt 434



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>dbj|AP003150.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-215C1, complete
              sequences
          Length = 150724

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     aaatgatttgcctgtttgt 51
              |||||||||||||||||||
Sbjct: 113084 aaatgatttgcctgtttgt 113066



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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   tgcctgtttgtaggcaaaa 59
            |||||||||||||||||||
Sbjct: 7056 tgcctgtttgtaggcaaaa 7038



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>gb|AY075119.1| Uncultured marine bacterium clone I2 maturase gene, partial cds
          Length = 650

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 45  tgtttgtaggcaaaatac 62
           ||||||||||||||||||
Sbjct: 524 tgtttgtaggcaaaatac 507



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>ref|XM_543722.2| PREDICTED: Canis familiaris similar to solute carrier family 38,
            member 2 (LOC486596), mRNA
          Length = 5148

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 35   atgatttgcctgtttgtaggca 56
            ||||||||||| ||||||||||
Sbjct: 2830 atgatttgcctttttgtaggca 2851



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>gb|AC002301.1|HUAC002301 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-328A3, complete
             sequence
          Length = 105485

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 43    cctgtttgtaggcaaaat 60
             ||||||||||||||||||
Sbjct: 81003 cctgtttgtaggcaaaat 81020



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>gb|AC125352.4| Mus musculus BAC clone RP23-451M13 from chromosome 8, complete sequence
          Length = 203416

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 37    gatttgcctgtttgtagg 54
             ||||||||||||||||||
Sbjct: 98817 gatttgcctgtttgtagg 98834



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>emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains
            the 5' end of the MAPKAP1 gene for mitogen-activated
            protein kinase associated protein 1, a novel gene, the 5'
            end of the PBX3 gene for pre-B-cell leukemia
            transcription factor 3 and three CpG islands, complete
            sequence
          Length = 109081

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 22   aacaacttnacaaatgatttg 42
            |||||||| ||||||||||||
Sbjct: 2621 aacaacttcacaaatgatttg 2601



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>emb|AL356259.11| Human DNA sequence from clone RP11-385E5 on chromosome 13 Contains a
             mitochondrial ribosomal protein L3 (MRPL3) (MRL3 RPML3)
             pseudogene, a ADP-ribosyltransferase (NAD+; poly
             (ADP-ribose) polymerase)-like 1 (ADPRTL1) (PH5P p193 PARPL
             VPARP VAULT3 KIAA0177) pseudogene, a cyclin K (CCNK)
             pseudogene, a pseudogene similar to ornithine transporter
             2 (ORNT2), a KIAA1074 protein pseudogene, three novel
             genes and three CpG islands, complete sequence
          Length = 141876

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 31    acaaatgatttgcctgtttgta 52
             ||||||||||||||||| ||||
Sbjct: 21232 acaaatgatttgcctgtctgta 21253



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>gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, complete sequence
          Length = 174007

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 43    cctgtttgtaggcaaaat 60
             ||||||||||||||||||
Sbjct: 23755 cctgtttgtaggcaaaat 23738



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>gb|DP000036.1| Papio anubis target 106 genomic scaffold
          Length = 492848

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 32     caaatgatttgcctgttt 49
              ||||||||||||||||||
Sbjct: 220571 caaatgatttgcctgttt 220554



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>gb|DP000047.1| Saimiri boliviensis boliviensis target 106 genomic scaffold
          Length = 211360

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 32     caaatgatttgcctgttt 49
              ||||||||||||||||||
Sbjct: 123534 caaatgatttgcctgttt 123517



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>gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, complete sequence
          Length = 174363

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 43    cctgtttgtaggcaaaat 60
             ||||||||||||||||||
Sbjct: 83002 cctgtttgtaggcaaaat 82985



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>emb|CR354540.12| Zebrafish DNA sequence from clone DKEY-235K4 in linkage group 7, complete
              sequence
          Length = 165122

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     aatgatttgcctgtttgt 51
              ||||||||||||||||||
Sbjct: 128076 aatgatttgcctgtttgt 128059


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,659
Number of Sequences: 3902068
Number of extensions: 318659
Number of successful extensions: 18979
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18951
Number of HSP's gapped (non-prelim): 28
length of query: 62
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 41
effective length of database: 17,151,101,840
effective search space: 703195175440
effective search space used: 703195175440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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