ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3p21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NAH_SCHPO (P36606) Na(+)/H(+) antiporter 30 3.9
2SO1A4_RAT (O35913) Solute carrier organic anion transporter fami... 29 8.6

>NAH_SCHPO (P36606) Na(+)/H(+) antiporter|
          Length = 468

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 550 SFQL*LFSYRGSILLLQYYAWLSK*MPLWRLVSLRRVTSEFCRR 419
           +F L  F+Y G+I+    + W  + +P+WRL+    +T   CRR
Sbjct: 300 TFSLLFFTYYGTIIPWNNFNWSVEGLPVWRLIVFSILTL-VCRR 342



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>SO1A4_RAT (O35913) Solute carrier organic anion transporter family member 1A4|
           (Solute carrier family 21 member 5) (Sodium-independent
           organic anion-transporting polypeptide 2) (Brain digoxin
           carrier protein) (Brain-specific organic anion
           transporter) (OA
          Length = 661

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
 Frame = -3

Query: 354 NKMQNALVIAIFGCEITTL-------YLERIIEGEEK 265
           NK+Q  L+IAIFGC I +L        L R I+ EEK
Sbjct: 507 NKLQYFLIIAIFGCFIYSLAGIPGYMVLLRCIKSEEK 543


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,055,294
Number of Sequences: 219361
Number of extensions: 1417939
Number of successful extensions: 3149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3149
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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