ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3p18 |
|---|---|
| Clone Library Name | barley_pub |
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 68.9 bits (167), Expect = 1e-11 Identities = 29/48 (60%), Positives = 39/48 (81%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+KDLS LGR+LS+V+IVDNSP ++ F +N +P++SWFDD D E Sbjct: 201 GNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTE 248
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 68.9 bits (167), Expect = 1e-11 Identities = 29/48 (60%), Positives = 39/48 (81%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+KDLS LGR+LS+V+IVDNSP ++ F +N +P++SWFDD D E Sbjct: 202 GNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTE 249
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 68.9 bits (167), Expect = 1e-11 Identities = 29/48 (60%), Positives = 39/48 (81%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+KDLS LGR+LS+V+IVDNSP ++ F +N +P++SWFDD D E Sbjct: 202 GNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTE 249
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 67.0 bits (162), Expect = 4e-11 Identities = 29/48 (60%), Positives = 38/48 (79%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+KDLS LGRDL RV+I+DNSP ++ F DN +P+ SWFD+ +D E Sbjct: 186 GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTE 233
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 67.0 bits (162), Expect = 4e-11 Identities = 29/48 (60%), Positives = 38/48 (79%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+KDLS LGRDL RV+I+DNSP ++ F DN +P+ SWFD+ +D E Sbjct: 186 GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTE 233
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 63.5 bits (153), Expect = 5e-10 Identities = 31/65 (47%), Positives = 41/65 (63%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXLV 436 G Y+KDLS LGRDL + VI+DNSP ++ F +N +P++SWFDD D E L Sbjct: 196 GCYVKDLSRLGRDLRKTVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFEELS 255 Query: 435 GVEDV 421 G +DV Sbjct: 256 GTDDV 260
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 63.5 bits (153), Expect = 5e-10 Identities = 31/65 (47%), Positives = 41/65 (63%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXLV 436 G Y+KDLS LGRDL + +I+DNSP ++ F +N +P++SWFDD D E L Sbjct: 197 GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELS 256 Query: 435 GVEDV 421 G EDV Sbjct: 257 GAEDV 261
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 58.9 bits (141), Expect = 1e-08 Identities = 25/48 (52%), Positives = 35/48 (72%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+K+LS +GR LS ++I+DNSP ++ F + IPI SWF D +D E Sbjct: 353 GNYIKNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNE 400
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 58.2 bits (139), Expect = 2e-08 Identities = 24/48 (50%), Positives = 34/48 (70%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GNY+K+LS +GR LS +I+DNSP ++ F + +PI SWF D +D E Sbjct: 323 GNYIKNLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNE 370
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 57.4 bits (137), Expect = 3e-08 Identities = 24/48 (50%), Positives = 35/48 (72%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 GN++KDLS LGR+L +I+DNSP ++ F + +PI SWF+D +D E Sbjct: 253 GNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDME 300
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 57.4 bits (137), Expect = 3e-08 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX--XXXXXX 442 G Y+KDLS L RDLS+V+++D + Q +N I ++ W DP DK Sbjct: 303 GEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWLGDPKDKNLVALIPFLEYIA 362 Query: 441 LVGVEDVRPFI 409 +GVEDVRP + Sbjct: 363 GMGVEDVRPVL 373
>TIM50_SCHPO (O13636) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 452 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX--XXXXXX 442 G +KDLS L RDLSRV+++D +P+++ Q DN I + W +P DKE Sbjct: 258 GKVIKDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAMAPWTGNPKDKELVGLIPLLEFIA 317 Query: 441 LVGVEDVRPFI 409 ++ ++DVRP + Sbjct: 318 IMDIKDVRPVL 328
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 52.4 bits (124), Expect = 1e-06 Identities = 22/47 (46%), Positives = 33/47 (70%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 475 G ++KDLS L RDLS+V+I+D P ++ Q +N IP+E W + +DK Sbjct: 273 GVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADDK 319
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 49.7 bits (117), Expect = 7e-06 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX--XXXXXX 442 G Y+KDLS L RDLS+V+++D + Q +N I ++ W +P DK Sbjct: 332 GEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWNGNPKDKTLVALIPFLEYLA 391 Query: 441 LVGVEDVR 418 +GV+DVR Sbjct: 392 GMGVDDVR 399
>TIM50_CANGA (Q6FRX4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 485 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX-XXXXXXL 439 G ++KDLS L RDL +V+I+D ++ Q +N IP++ W +DK Sbjct: 279 GVHIKDLSKLNRDLKKVMIIDTDENSYKLQPENAIPMDPWDGKADDKLLRLIPFLEYMAT 338 Query: 438 VGVEDVRPFIATKFNLRQ 385 VEDVRP + + N R+ Sbjct: 339 QQVEDVRPILKSYHNKRE 356
>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 493 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/48 (43%), Positives = 32/48 (66%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 G +KDL+ L RDLS+VV+VD +P +F +NGI ++ W + D+E Sbjct: 302 GKLVKDLNHLNRDLSKVVVVDTNPDSFHLHPENGILVKPWKGEREDRE 349
>TIM50_NEUCR (Q874C1) Import inner membrane translocase subunit tim-50,| mitochondrial precursor Length = 540 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE 472 G +KDLS L RDLS+V+I+D P+ Q +N I + W DP D E Sbjct: 329 GEIVKDLSYLNRDLSKVIIIDTDPKHVRAQPENAIVLPKWKGDPKDTE 376
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXLV 436 G +KDLS++ RD+ +++I+D Q +N IPIE W P DKE LV Sbjct: 274 GKLVKDLSLMNRDMGKIIIIDPDTGCTMKQPENSIPIEPWKGTPGDKELVKLIPFLEWLV 333 Query: 435 --GVEDVRPFI 409 V DVRP + Sbjct: 334 SQNVNDVRPIL 344
>TIM50_BRARE (Q6NWD4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 387 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE--XXXXXXXXXX 442 G+++KD+S L RD S+V++VD +AFG Q NG+ + W + D+ Sbjct: 263 GHHVKDVSCLNRDTSKVIVVDCKREAFGLQPFNGLALCKWDGNSEDRTLYDLAAFLKTIA 322 Query: 441 LVGVEDVR 418 GVEDVR Sbjct: 323 TSGVEDVR 330
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Frame = -3 Query: 609 YLKDLSVL----------GRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXX 460 Y+KDLS++ L V+I+DNSP ++ +DN I +E W DP D + Sbjct: 358 YIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTDTDLLNL 417 Query: 459 XXXXXXLVGVEDVRPFIATK 400 + DVR +A K Sbjct: 418 LPFLEAMRYSTDVRNILALK 437
>TIM50_PONPY (Q5RAJ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXLV 436 G+++KD+S L RD +RVV+VD +AF Q NG+ + W + +D+ + Sbjct: 228 GHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIA 287 Query: 435 --GVEDVR 418 GVEDVR Sbjct: 288 LNGVEDVR 295
>TIM50_HUMAN (Q3ZCQ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXLV 436 G+++KD+S L RD +RVV+VD +AF Q NG+ + W + +D+ + Sbjct: 228 GHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIA 287 Query: 435 --GVEDVR 418 GVEDVR Sbjct: 288 LNGVEDVR 295
>TIM50_BOVIN (Q3SZB3) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 355 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKEXXXXXXXXXXLV 436 G+++KD+S L RD +RVV+VD +AF Q NG+ + W + +D+ + Sbjct: 230 GHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIA 289 Query: 435 --GVEDVR 418 GVEDVR Sbjct: 290 LNGVEDVR 297
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 45.8 bits (107), Expect = 1e-04 Identities = 19/47 (40%), Positives = 30/47 (63%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 475 G +KD+S L RD S+V+++D +P+ Q +NGI ++ W P DK Sbjct: 317 GKVVKDISFLNRDPSKVIVLDVNPEHVALQPENGIVLQPWNGSPGDK 363
>TIM50_GIBZE (Q4I099) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 525 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/47 (44%), Positives = 29/47 (61%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 475 G +KDLS L RDLS+V+I+D + Q DN I ++ W D +DK Sbjct: 318 GEIVKDLSYLNRDLSKVIIIDTKAKHVRNQPDNAIILDPWKGDKDDK 364
>TIM50_MOUSE (Q9D880) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/47 (40%), Positives = 31/47 (65%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 475 G+++KD+S L RD +RVV+VD +AF Q NG+ + W + +D+ Sbjct: 228 GHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPWDGNSDDR 274
>TIM50_DEBHA (Q6BVY9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 471 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESW---FDDPNDKEXXXXXXXXX 445 G +KDLS+L RDL + V++D ++ Q DN IP++ W +DD K Sbjct: 271 GKLVKDLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMKPWDGSYDDTLVK--LIPFLEYL 328 Query: 444 XLVGVEDVRPFIAT---KFNLRQKVA 376 V+DVRP + + K N+ Q+ A Sbjct: 329 ATQPVKDVRPILNSFKDKSNIVQEFA 354
>TIM50_KLULA (Q6CM45) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 480 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDK 475 G ++KDLS L RDL +V+I+D +F Q +N I +E W +D+ Sbjct: 276 GVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADDR 322
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/37 (51%), Positives = 27/37 (72%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPI 505 G ++KDLS L RDL +VVI+D+ P A+ Q +N IP+ Sbjct: 247 GAHVKDLSNLNRDLRQVVILDDDPAAYQLQPENAIPV 283
>TIM50_ASHGO (Q75A73) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 478 G ++KDLS L RDL + +I+D P + Q++N I E W +D Sbjct: 272 GIHIKDLSHLNRDLGKTLIIDTDPNSVKLQMENAILAEPWDGKADD 317
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 39.3 bits (90), Expect = 0.009 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 478 G + K+L L RDLSRV++VD P DN + + W + +D Sbjct: 220 GQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVLTKWLGNDDD 265
>TIM50_CANAL (Q59W44) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 469 Score = 38.9 bits (89), Expect = 0.012 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 478 G +KDLS+L RDL + V++D + Q +N I ++ W P++ Sbjct: 269 GKLIKDLSLLNRDLGKTVMIDVDEDSAALQPENSIIVKKWEGQPDE 314
>TI50B_DROME (Q9W0S3) Import inner membrane translocase subunit TIM50-B,| mitochondrial precursor Length = 409 Score = 36.6 bits (83), Expect = 0.061 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 478 G+++K+L L RDL RVV+VD + F N I W + ND Sbjct: 290 GHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDND 335
>TIM50_CAEBR (Q61JS7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 456 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE--XXXXXXXXXX 442 G+++KDLS L RDLS+V+ +D ++ +N + + W + +D Sbjct: 333 GHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVPEWRGNMDDTSLVDLAELLKTIH 392 Query: 441 LVGVEDVRPFI 409 L EDVRP + Sbjct: 393 LSDAEDVRPML 403
>TIM50_CAEEL (Q22647) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 452 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPNDKE--XXXXXXXXXX 442 G+++KDLS L RDLS+V+ +D ++ +N + + W + +D Sbjct: 329 GHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVPEWKGNMDDTSLVDLAELLKTIH 388 Query: 441 LVGVEDVRPFI 409 L EDVRP + Sbjct: 389 LSDAEDVRPML 399
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 33.1 bits (74), Expect = 0.67 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 615 GNYLKDLSVLGRDLSRVVIVDNSPQAFGFQLDNGIPIESWFDDPND 478 G+++K+L L RDL +V++VD A DN + W + +D Sbjct: 309 GHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHGNDDD 354
>BTF3_HUMAN (P20290) Transcription factor BTF3 (RNA polymerase B transcription| factor 3) Length = 206 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2 Query: 484 KRQGAPSTATVPGKPGWCGRCPAIHRN*VQPPPEGGQR 371 +R GAP+ A G+ G CP QPPP GG R Sbjct: 2 RRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTR 39
>NAS29_CAEEL (Q20958) Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21)| (Nematode astacin 29) Length = 532 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%) Frame = +3 Query: 471 APCRLGRRTNSRS--VCHCPTG 530 APC+ G TNSR+ VC CPTG Sbjct: 342 APCQNGGFTNSRNCKVCKCPTG 363
>S27A5_MOUSE (Q4LDG0) Bile acyl-CoA synthetase (EC 6.2.1.7) (BACS) (Bile acid| CoA ligase) (BA-CoA ligase) (BAL) (Cholate--CoA ligase) (Very long chain acyl-CoA synthetase-related protein) (VLACS-related) (VLACSR) (Fatty acid transport protein 5) (FATP-5) Length = 689 Score = 29.6 bits (65), Expect = 7.4 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -1 Query: 584 DVTCLVLS*LTILHRPLGSSWTMAYRSRVGS 492 D TCLVL L +L RP SSW + S VG+ Sbjct: 38 DPTCLVLLGLALLGRPWISSWMPHWLSLVGA 68
>ATPK_CAEEL (Q22021) Putative ATP synthase f chain, mitochondrial (EC 3.6.3.14)| Length = 153 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Frame = +1 Query: 22 LSSKFRQISAGLLQCWAANSDKYPLVYYNAGQ*PLWVLATACTRFP-------KVYRFLE 180 L +KF + G L W A +K P +YN +W + P ++RF+ Sbjct: 70 LDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWRVHNLYYSGPVYNNTVKVIFRFIF 129 Query: 181 TYNSPNY 201 Y+ N+ Sbjct: 130 AYSFLNW 136
>DNAS1_CANFA (Q767J3) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 284 Score = 29.3 bits (64), Expect = 9.7 Identities = 22/83 (26%), Positives = 36/83 (43%) Frame = +2 Query: 38 DKYLLAYYNAGQQIPTNIRWSITMLGSDPSGSWLLLVQGSLRFTGF*KLTTAQIMTLSVW 217 D L+ +NAG +WS L ++P+ WL+ T T + V Sbjct: 184 DIVLMGDFNAGCSYVAASQWSSIRLRTNPAFQWLIPDTADTTSTS----THCAYDRIVVA 239 Query: 218 RFEIK*HMIVPEQQRILNFQVSF 286 +++ H +VPE NFQV++ Sbjct: 240 GSQLQ-HAVVPESAAPFNFQVAY 261
>PHOP2_RAT (Q66HC4) Pyridoxal phosphate phosphatase PHOSPHO2 (EC 3.1.3.74)| Length = 241 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +1 Query: 127 WVLATACTRFPKVYRFLETYNSPNYDSV-RLAVRN*MTHDCTRTTKD 264 WVL A F V+ + T N ++DS RL VRN TH CTR K+ Sbjct: 107 WVLEAAA--FHDVFDTVFT-NPASFDSTGRLTVRNCHTHACTRCPKN 150
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 29.3 bits (64), Expect = 9.7 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Frame = +3 Query: 459 AVLGAPCRLGRR-----TNSRSVCHCPTGTQRP-----VENCQL*QHETSHVRELIDPLS 608 A + PC G N +++C CP+G P V+ C L + H + I+ L Sbjct: 375 ACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLG 434 Query: 609 S 611 S Sbjct: 435 S 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,094,778 Number of Sequences: 219361 Number of extensions: 2345688 Number of successful extensions: 7079 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 6162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7070 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
