Clone Information

BLAST Search Result

Clone Name	rbasd3p18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_185175.1\| Oryza sativa (japonica cultivar-group), mRNA	133	8e-28
2	dbj\|AK101126.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	125	2e-25
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	100	1e-17
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	1e-17
5	gb\|AC092559.4\| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom...	100	1e-17
6	gb\|AC096688.4\| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom...	100	1e-17
7	gb\|AY112440.1\| Zea mays CL20332_1 mRNA sequence	100	1e-17
8	ref\|XM_477086.1\| Oryza sativa (japonica cultivar-group), mRNA	68	4e-08
9	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
10	dbj\|AP003943.3\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
11	dbj\|AP003837.2\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
12	dbj\|AK109769.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	68	4e-08
13	ref\|XM_315066.2\| Anopheles gambiae str. PEST ENSANGP00000011443 ...	52	0.002
14	gb\|AC011761.15\| Drosophila melanogaster clone BACH50G05, complet...	44	0.54
15	gb\|AC010917.16\|AC010917 Drosophila melanogaster, chromosome X, r...	44	0.54
16	emb\|CT737180.5\| M.truncatula DNA sequence from clone MTH2-117L19...	44	0.54
17	gb\|AE003570.4\| Drosophila melanogaster chromosome X, section 69 ...	44	0.54
18	gb\|BC088917.1\| Xenopus laevis hypothetical LOC496326, mRNA (cDNA...	44	0.54
19	gb\|AC114512.5\| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hos...	42	2.1
20	gb\|AC131172.4\| Rattus norvegicus 5 BAC CH230-12K15 (Children's H...	42	2.1
21	gb\|AF022141.2\|AF022141 Homo sapiens chromosome 21 clone cosmid Q...	42	2.1
22	gb\|AF020801.2\|AF020801 Homo sapiens chromosome 21 clone cosmid c...	42	2.1
23	dbj\|AP001724.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	42	2.1
24	gb\|AC107027.9\| Homo sapiens 3 BAC RP11-517B11 (Roswell Park Canc...	42	2.1
25	dbj\|BS000199.1\| Pan troglodytes chromosome 22 clone:PTB-024F05, ...	42	2.1
26	emb\|AJ229041.1\|HS229041 Homo sapiens 959 kb contig between AML1 ...	42	2.1
27	gb\|AC118594.6\| Mus musculus chromosome 1, clone RP24-479J20, com...	40	8.4
28	gb\|DQ145275.1\| Drosophila miranda neo-Y Tsf3 gene, partial sequence	40	8.4
29	gb\|AC129573.16\| Mus musculus chromosome 6, clone RP23-457B5, com...	40	8.4
30	gb\|AC008074.3\| Homo sapiens BAC clone RP11-568N6 from 2, complet...	40	8.4
31	emb\|AL450388.13\| Human DNA sequence from clone RP11-292F22 on ch...	40	8.4
32	emb\|AL121906.18\|HSDJ63M2 Human DNA sequence from clone RP1-63M2 ...	40	8.4
33	emb\|AL939120.1\|SCO939120 Streptomyces coelicolor A3(2) complete ...	40	8.4
34	gb\|AC122546.14\| Mus musculus chromosome 5, clone RP23-408A1, com...	40	8.4
35	gb\|AC153550.10\| Mus musculus 10 BAC RP23-250H23 (Roswell Park Ca...	40	8.4
36	gb\|AC153549.5\| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can...	40	8.4
37	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
38	gb\|AF106004.1\|AF106004 Streptomyces coelicolor whiJ sporulation ...	40	8.4
39	dbj\|AP002839.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
40	dbj\|AK102504.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
41	dbj\|AK063853.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
42	emb\|CR855387.11\| Zebrafish DNA sequence from clone DKEY-282H22 i...	40	8.4
43	dbj\|AP000857.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	8.4
44	dbj\|AP003438.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	8.4
45	gb\|AC132374.4\| Mus musculus BAC clone RP24-69E21 from 10, comple...	40	8.4
46	emb\|AL929124.13\| Zebrafish DNA sequence from clone CH211-128D23,...	40	8.4

>ref|NM_185175.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1335

 Score =  133 bits (67), Expect = 8e-28
 Identities = 199/243 (81%)
 Strand = Plus / Minus

                                                                        
Query: 375  tggccaccttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacac 434
            |||| |||||||  || |||||||||||  |||| ||  ||||||||||||||||||| |
Sbjct: 1306 tggcaaccttctcacgaaggttgaacttccttgcaatacatggccggacatcttccaccc 1247

                                                                        
Query: 435  caaccaggctttccaggaacggtagcagtgctaggagctccttgtcgtttgggtcgtcga 494
            ||||||  |||| ||  || || || | || |||||| ||  |||| ||  | || || |
Sbjct: 1246 caaccaaactttgcaaaaatggaagtaatgttaggagttctctgtcattacgatcatcaa 1187

                                                                        
Query: 495  accaactctcgatcggtatgccattgtccaactggaacccaaaggcctgtggagaattgt 554
            ||||||| || || || | ||| ||||| || |||||||||||||||||||| ||||| |
Sbjct: 1186 accaactttcaatagggacgccgttgtctaattggaacccaaaggcctgtggtgaattat 1127

                                                                        
Query: 555  caactatgacaacacgagacaagtcacgtccgagaactgatagatcctttaagtagttgc 614
            |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct: 1126 caacaatgaccacacgagccaagtcacgtccaagaactgatagatcctttaagtagtttc 1067

               
Query: 615  cct 617
            |||
Sbjct: 1066 cct 1064

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>dbj|AK101126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025N10, full
            insert sequence
          Length = 1947

 Score =  125 bits (63), Expect = 2e-25
 Identities = 198/243 (81%)
 Strand = Plus / Minus

                                                                        
Query: 375  tggccaccttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacac 434
            |||| |||||||  || |||||||||||  |||| ||  ||||||||||||||||||| |
Sbjct: 1565 tggcaaccttctcacgaaggttgaacttccttgcaatacatggccggacatcttccaccc 1506

                                                                        
Query: 435  caaccaggctttccaggaacggtagcagtgctaggagctccttgtcgtttgggtcgtcga 494
            ||||||  |||| ||  || || || | || |||||| ||  |||| ||  | || || |
Sbjct: 1505 caaccaaactttgcaaaaatggaagtaatgttaggagttctctgtcattacgatcatcaa 1446

                                                                        
Query: 495  accaactctcgatcggtatgccattgtccaactggaacccaaaggcctgtggagaattgt 554
            ||||||| || || || | ||| ||||| || |||||||||||||||||| | ||||| |
Sbjct: 1445 accaactttcaatagggacgccgttgtctaattggaacccaaaggcctgttgtgaattat 1386

                                                                        
Query: 555  caactatgacaacacgagacaagtcacgtccgagaactgatagatcctttaagtagttgc 614
            |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct: 1385 caacaatgaccacacgagccaagtcacgtccaagaactgatagatcctttaagtagtttc 1326

               
Query: 615  cct 617
            |||
Sbjct: 1325 cct 1323

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                            
Query: 540      cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
                ||||||| ||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 35470382 cctgtggtgaattatcaacaatgaccacacgagccaagtcacgtccaagaactgatagat 35470441

                                  
Query: 600      cctttaagtagttgccct 617
                ||||||||||||| ||||
Sbjct: 35470442 cctttaagtagtttccct 35470459



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 375      tggccaccttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacac 434
                |||| |||||||  || |||||||||||  |||| ||  ||||||||||||||||||| |
Sbjct: 35469196 tggcaaccttctcacgaaggttgaacttccttgcaatacatggccggacatcttccaccc 35469255

                      
Query: 435      caacca 440
                ||||||
Sbjct: 35469256 caacca 35469261

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                            
Query: 540      cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
                ||||||| ||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 35560454 cctgtggtgaattatcaacaatgaccacacgagccaagtcacgtccaagaactgatagat 35560513

                                  
Query: 600      cctttaagtagttgccct 617
                ||||||||||||| ||||
Sbjct: 35560514 cctttaagtagtttccct 35560531



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                            
Query: 375      tggccaccttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacac 434
                |||| |||||||  || |||||||||||  |||| ||  ||||||||||||||||||| |
Sbjct: 35559268 tggcaaccttctcacgaaggttgaacttccttgcaatacatggccggacatcttccaccc 35559327

                      
Query: 435      caacca 440
                ||||||
Sbjct: 35559328 caacca 35559333

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>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
             sequence
          Length = 133846

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Minus

                                                                         
Query: 540   cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
             ||||||| ||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 17244 cctgtggtgaattatcaacaatgaccacacgagccaagtcacgtccaagaactgatagat 17185

                               
Query: 600   cctttaagtagttgccct 617
             ||||||||||||| ||||
Sbjct: 17184 cctttaagtagtttccct 17167



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                         
Query: 375   tggccaccttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacac 434
             |||| |||||||  || |||||||||||  |||| ||  ||||||||||||||||||| |
Sbjct: 18430 tggcaaccttctcacgaaggttgaacttccttgcaatacatggccggacatcttccaccc 18371

                   
Query: 435   caacca 440
             ||||||
Sbjct: 18370 caacca 18365

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>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence,
            complete sequence
          Length = 145290

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                        
Query: 540  cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
            ||||||| ||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||
Sbjct: 3345 cctgtggtgaattatcaacaatgaccacacgagccaagtcacgtccaagaactgatagat 3404

                              
Query: 600  cctttaagtagttgccct 617
            ||||||||||||| ||||
Sbjct: 3405 cctttaagtagtttccct 3422



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                        
Query: 375  tggccaccttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacac 434
            |||| |||||||  || |||||||||||  |||| ||  ||||||||||||||||||| |
Sbjct: 2159 tggcaaccttctcacgaaggttgaacttccttgcaatacatggccggacatcttccaccc 2218

                  
Query: 435  caacca 440
            ||||||
Sbjct: 2219 caacca 2224

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>gb|AY112440.1| Zea mays CL20332_1 mRNA sequence
          Length = 630

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 182/226 (80%)
 Strand = Plus / Plus

                                                                       
Query: 392 aggttgaacttagttgcgatgaatggccggacatcttccacaccaaccaggctttccagg 451
           |||||||||||  |||| ||  | |||| |||||||||||| || |||| |||||| | |
Sbjct: 318 aggttgaacttccttgctatataaggcctgacatcttccacgccgaccaagctttctaag 377

                                                                       
Query: 452 aacggtagcagtgctaggagctccttgtcgtttgggtcgtcgaaccaactctcgatcggt 511
           ||||| |||| |   || |||||| |||| || || || || ||||| || || || || 
Sbjct: 378 aacgggagcaatttcagcagctccatgtcattgggatcatcaaaccagctttctatagga 437

                                                                       
Query: 512 atgccattgtccaactggaacccaaaggcctgtggagaattgtcaactatgacaacacga 571
           |||||||||||||||||||||||||||||||| |||||||||||||| || |  || |||
Sbjct: 438 atgccattgtccaactggaacccaaaggcctgcggagaattgtcaacaatcattacgcga 497

                                                         
Query: 572 gacaagtcacgtccgagaactgatagatcctttaagtagttgccct 617
           |  ||||||||||| || ||||  |||||||| | |||||| ||||
Sbjct: 498 gttaagtcacgtccaagtactgtcagatccttcatgtagtttccct 543

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>ref|XM_477086.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1787

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 540  cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
            |||||||||| |||||||| || |  | |||||  ||||||||||| ||||||| |||||
Sbjct: 1474 cctgtggagagttgtcaacaatcattatacgagttaagtcacgtccaagaactgttagat 1415

                              
Query: 600  cctttaagtagttgccct 617
            ||||||||||||| ||||
Sbjct: 1414 cctttaagtagtttccct 1397

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                           
Query: 540     cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
               |||||||||| |||||||| || |  | |||||  ||||||||||| ||||||| |||||
Sbjct: 5842355 cctgtggagagttgtcaacaatcattatacgagttaagtcacgtccaagaactgttagat 5842296

                                 
Query: 600     cctttaagtagttgccct 617
               ||||||||||||| ||||
Sbjct: 5842295 cctttaagtagtttccct 5842278



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 129/165 (78%)
 Strand = Plus / Minus

                                                                           
Query: 380     accttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacaccaacc 439
               |||||||  ||||||||||||||  | || ||  |||| || ||||| || || ||||||
Sbjct: 5843199 accttctcacggaggttgaacttcctggctatatatggtcgaacatcctcaacgccaacc 5843140

                                                                           
Query: 440     aggctttccaggaacggtagcagtgctaggagctccttgtcgtttgggtcgtcgaaccaa 499
               |||||||||| ||| || ||||||   |  |||||||  || || || || || ||||| 
Sbjct: 5843139 aggctttccaagaatgggagcagtttcaacagctcctgatcattgggatcatcaaaccag 5843080

                                                            
Query: 500     ctctcgatcggtatgccattgtccaactggaacccaaaggcctgt 544
               || || || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 5843079 ctttcaataggaatgccattgtctaactggaatccaaaagcctgt 5843035

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>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1119_B04
          Length = 151721

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 540    cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
              |||||||||| |||||||| || |  | |||||  ||||||||||| ||||||| |||||
Sbjct: 149383 cctgtggagagttgtcaacaatcattatacgagttaagtcacgtccaagaactgttagat 149324

                                
Query: 600    cctttaagtagttgccct 617
              ||||||||||||| ||||
Sbjct: 149323 cctttaagtagtttccct 149306



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 129/165 (78%)
 Strand = Plus / Minus

                                                                          
Query: 380    accttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacaccaacc 439
              |||||||  ||||||||||||||  | || ||  |||| || ||||| || || ||||||
Sbjct: 150227 accttctcacggaggttgaacttcctggctatatatggtcgaacatcctcaacgccaacc 150168

                                                                          
Query: 440    aggctttccaggaacggtagcagtgctaggagctccttgtcgtttgggtcgtcgaaccaa 499
              |||||||||| ||| || ||||||   |  |||||||  || || || || || ||||| 
Sbjct: 150167 aggctttccaagaatgggagcagtttcaacagctcctgatcattgggatcatcaaaccag 150108

                                                           
Query: 500    ctctcgatcggtatgccattgtccaactggaacccaaaggcctgt 544
              || || || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 150107 ctttcaataggaatgccattgtctaactggaatccaaaagcctgt 150063

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>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1559_F09
          Length = 87792

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 540   cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
             |||||||||| |||||||| || |  | |||||  ||||||||||| ||||||| |||||
Sbjct: 17029 cctgtggagagttgtcaacaatcattatacgagttaagtcacgtccaagaactgttagat 16970

                               
Query: 600   cctttaagtagttgccct 617
             ||||||||||||| ||||
Sbjct: 16969 cctttaagtagtttccct 16952



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 129/165 (78%)
 Strand = Plus / Minus

                                                                         
Query: 380   accttctggcggaggttgaacttagttgcgatgaatggccggacatcttccacaccaacc 439
             |||||||  ||||||||||||||  | || ||  |||| || ||||| || || ||||||
Sbjct: 17873 accttctcacggaggttgaacttcctggctatatatggtcgaacatcctcaacgccaacc 17814

                                                                         
Query: 440   aggctttccaggaacggtagcagtgctaggagctccttgtcgtttgggtcgtcgaaccaa 499
             |||||||||| ||| || ||||||   |  |||||||  || || || || || ||||| 
Sbjct: 17813 aggctttccaagaatgggagcagtttcaacagctcctgatcattgggatcatcaaaccag 17754

                                                          
Query: 500   ctctcgatcggtatgccattgtccaactggaacccaaaggcctgt 544
             || || || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 17753 ctttcaataggaatgccattgtctaactggaatccaaaagcctgt 17709

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>dbj|AK109769.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A05, full
            insert sequence
          Length = 1787

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 540  cctgtggagaattgtcaactatgacaacacgagacaagtcacgtccgagaactgatagat 599
            |||||||||| |||||||| || |  | |||||  ||||||||||| ||||||| |||||
Sbjct: 1474 cctgtggagagttgtcaacaatcattatacgagttaagtcacgtccaagaactgttagat 1415

                              
Query: 600  cctttaagtagttgccct 617
            ||||||||||||| ||||
Sbjct: 1414 cctttaagtagtttccct 1397

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>ref|XM_315066.2| Anopheles gambiae str. PEST ENSANGP00000011443
           (ENSANGG00000008954), partial mRNA
          Length = 839

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 492 cgaaccaactctcgatcggtatgccattgtccaactggaacccaaaggcctgtggagaat 551
           ||||||||||||| || ||||| ||||| |||| |||| | ||||| |||||||| ||||
Sbjct: 520 cgaaccaactctctattggtataccattttccagctggtatccaaatgcctgtggtgaat 461

                 
Query: 552 tgtcaa 557
           | ||||
Sbjct: 460 tatcaa 455

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>gb|AC011761.15| Drosophila melanogaster clone BACH50G05, complete sequence
          Length = 108727

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 56    tattacaatgctgggcagcaaa 77
             ||||||||||||||||||||||
Sbjct: 21822 tattacaatgctgggcagcaaa 21843

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>gb|AC010917.16|AC010917 Drosophila melanogaster, chromosome X, region 19E-19E, BAC clone
             BACR28L06, complete sequence
          Length = 174820

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    tattacaatgctgggcagcaaa 77
             ||||||||||||||||||||||
Sbjct: 21920 tattacaatgctgggcagcaaa 21899

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>emb|CT737180.5| M.truncatula DNA sequence from clone MTH2-117L19 on chromosome 3,
             complete sequence
          Length = 130239

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 494   aaccaactctcgatcggtatgccattgtccaactggaacccaaaggcctg 543
             ||||||||||| || ||||| ||||||||||  ||||| ||||| |||||
Sbjct: 31274 aaccaactctcaattggtattccattgtccacttggaatccaaatgcctg 31225

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>gb|AE003570.4| Drosophila melanogaster chromosome X, section 69 of 74 of the complete
             sequence
          Length = 300051

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    tattacaatgctgggcagcaaa 77
             ||||||||||||||||||||||
Sbjct: 83156 tattacaatgctgggcagcaaa 83135

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>gb|BC088917.1| Xenopus laevis hypothetical LOC496326, mRNA (cDNA clone MGC:84985
           IMAGE:6325151), complete cds
          Length = 2747

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 429 ccacaccaaccaggctttccag 450
           ||||||||||||||||||||||
Sbjct: 506 ccacaccaaccaggctttccag 527

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>gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 247588

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   ccattaggaaagaagtgcatc 358
             |||||||||||||||||||||
Sbjct: 42661 ccattaggaaagaagtgcatc 42641

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>gb|AC131172.4| Rattus norvegicus 5 BAC CH230-12K15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230561

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   ccattaggaaagaagtgcatc 358
             |||||||||||||||||||||
Sbjct: 18830 ccattaggaaagaagtgcatc 18850

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>gb|AF022141.2|AF022141 Homo sapiens chromosome 21 clone cosmid Q13F10 map 21q22.2, complete
             sequence
          Length = 43473

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 304   gttttctccgggagcccttcagctg 328
             ||||||||||||||||| |||||||
Sbjct: 28817 gttttctccgggagcccatcagctg 28793

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>gb|AF020801.2|AF020801 Homo sapiens chromosome 21 clone cosmid c102A0977 map 21q22.2,
            complete sequence
          Length = 44548

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 304  gttttctccgggagcccttcagctg 328
            ||||||||||||||||| |||||||
Sbjct: 1837 gttttctccgggagcccatcagctg 1813

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>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 304   gttttctccgggagcccttcagctg 328
             ||||||||||||||||| |||||||
Sbjct: 86654 gttttctccgggagcccatcagctg 86630

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>gb|AC107027.9| Homo sapiens 3 BAC RP11-517B11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 171562

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 227  attaaatgacacatgattgta 247
            |||||||||||||||||||||
Sbjct: 5777 attaaatgacacatgattgta 5797

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>dbj|BS000199.1| Pan troglodytes chromosome 22 clone:PTB-024F05, map 22, complete
             sequences
          Length = 141767

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 304   gttttctccgggagcccttcagctg 328
             ||||||||||||||||| |||||||
Sbjct: 16221 gttttctccgggagcccatcagctg 16197

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>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22;
             segment 1/3
          Length = 323000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 304   gttttctccgggagcccttcagctg 328
             ||||||||||||||||| |||||||
Sbjct: 96373 gttttctccgggagcccatcagctg 96397

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>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    aacaacaaaggattctaaat 271
              ||||||||||||||||||||
Sbjct: 134639 aacaacaaaggattctaaat 134658

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>gb|DQ145275.1| Drosophila miranda neo-Y Tsf3 gene, partial sequence
          Length = 714

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 503 tcgatcggtatgccattgtccaac 526
           |||||||||||| |||||||||||
Sbjct: 360 tcgatcggtatgacattgtccaac 383

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>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence
          Length = 178159

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    gatagatcctttaagtagtt 612
              ||||||||||||||||||||
Sbjct: 111485 gatagatcctttaagtagtt 111466

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>gb|AC008074.3| Homo sapiens BAC clone RP11-568N6 from 2, complete sequence
          Length = 198087

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    tgggtcctggctactgcttg 146
              ||||||||||||||||||||
Sbjct: 125582 tgggtcctggctactgcttg 125563

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>emb|AL450388.13| Human DNA sequence from clone RP11-292F22 on chromosome 10 Contains the
              5' end of a novel gene similar to LOC195977 (FLJ32754), a
              novel pseudogene (LOC195977 FLJ32754), an
              S-adenosylhomocysteine hydrolase (AHCY) pseudogene, three
              novel genes and two CpG islands, complete sequence
          Length = 160496

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tctccgggagcccttcagct 327
              ||||||||||||||||||||
Sbjct: 136049 tctccgggagcccttcagct 136030

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>emb|AL121906.18|HSDJ63M2 Human DNA sequence from clone RP1-63M2 on chromosome 20 Contains the 3'
             end of the CBFA2T2 gene for runt domain core-binding
             factor alpha subunit 2, the C20orf134 gene, the E2F1 gene
             for E2F transcription factor 1, the APBA2BP gene for
             amyloid beta (A4) precursor protein-binding family A,
             member 2 protein, the C20orf144 gene and six CpG islands,
             complete sequence
          Length = 81914

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   gccattgtccaactggaacc 533
             ||||||||||||||||||||
Sbjct: 33157 gccattgtccaactggaacc 33176

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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    cgcgctggccaccttctggc 389
              ||||||||||||||||||||
Sbjct: 129587 cgcgctggccaccttctggc 129568

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>gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, complete sequence
          Length = 191640

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   ccaaccaggctttccaggaa 453
             ||||||||||||||||||||
Sbjct: 56812 ccaaccaggctttccaggaa 56831

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>gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 168208

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 113    ggcagtgacccctctgggtcctgg 136
              ||||||||| ||||||||||||||
Sbjct: 133616 ggcagtgacacctctgggtcctgg 133593

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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 113  ggcagtgacccctctgggtcctgg 136
            ||||||||| ||||||||||||||
Sbjct: 3807 ggcagtgacacctctgggtcctgg 3784

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 540      cctgtggagaattgtcaactatgacaac 567
                ||||||||| |||||||||||| |||||
Sbjct: 25133532 cctgtggagtattgtcaactattacaac 25133505

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>gb|AF106004.1|AF106004 Streptomyces coelicolor whiJ sporulation regulatory locus
          Length = 3842

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 cgcgctggccaccttctggc 389
           ||||||||||||||||||||
Sbjct: 510 cgcgctggccaccttctggc 491

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>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0688A04
          Length = 143969

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 540    cctgtggagaattgtcaactatgacaac 567
              ||||||||| |||||||||||| |||||
Sbjct: 133140 cctgtggagtattgtcaactattacaac 133113

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>dbj|AK102504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095E13, full
            insert sequence
          Length = 2366

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 540  cctgtggagaattgtcaactatgacaac 567
            ||||||||| |||||||||||| |||||
Sbjct: 1949 cctgtggagtattgtcaactattacaac 1922

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>dbj|AK063853.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D02, full
           insert sequence
          Length = 514

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 540 cctgtggagaattgtcaactatgacaac 567
           ||||||||| |||||||||||| |||||
Sbjct: 93  cctgtggagtattgtcaactattacaac 66

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>emb|CR855387.11| Zebrafish DNA sequence from clone DKEY-282H22 in linkage group 3,
             complete sequence
          Length = 106466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   acaacaaaggattctaaatt 272
             ||||||||||||||||||||
Sbjct: 61403 acaacaaaggattctaaatt 61422

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>dbj|AP000857.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D18, complete
             sequences
          Length = 144484

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 258   aaaggattctaaattttcaggtat 281
             ||||||||||||||| ||||||||
Sbjct: 34718 aaaggattctaaattatcaggtat 34695

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>dbj|AP003438.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1458E12
          Length = 145886

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 110    ctgggcagtgacccctctgggtcctggc 137
              |||||||||||||| |||||| ||||||
Sbjct: 111804 ctgggcagtgacccttctgggccctggc 111777

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>gb|AC132374.4| Mus musculus BAC clone RP24-69E21 from 10, complete sequence
          Length = 188514

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   ctggcacactccccattagg 345
             ||||||||||||||||||||
Sbjct: 69907 ctggcacactccccattagg 69926

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>emb|AL929124.13| Zebrafish DNA sequence from clone CH211-128D23, complete sequence
          Length = 165243

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   acaacaaaggattctaaatt 272
             ||||||||||||||||||||
Sbjct: 51948 acaacaaaggattctaaatt 51929


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,512,288
Number of Sequences: 3902068
Number of extensions: 4512288
Number of successful extensions: 75427
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75280
Number of HSP's gapped (non-prelim): 143
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result