ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
2dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
3dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
4dbj|AK067390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
5dbj|AK060468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
6emb|AL117325.3|HSDA79C13 Human DNA sequence from clone RP6-79C13... 44 0.57
7dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 44 0.57
8gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome ... 42 2.2
9emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 i... 42 2.2
10gb|AF448140.1| Danio rerio putative cellular retinol-binding pro... 42 2.2
11gb|AF363957.1| Danio rerio cellular retinol-binding protein type... 42 2.2
12gb|BC062286.1| Danio rerio retinol binding protein 2a, cellular,... 42 2.2
13gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence 42 2.2
14gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, comp... 42 2.2
15gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, com... 42 2.2
16ref|XM_691341.1| PREDICTED: Danio rerio similar to putative cell... 42 2.2
17emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 i... 42 2.2
18gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosom... 42 2.2
19gb|AC096654.1| Homo sapiens BAC clone RP11-17I18 from 2, complet... 42 2.2
20emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 i... 42 2.2
21emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in ... 42 2.2
22ref|NM_153004.1| Danio rerio retinol binding protein 2a, cellula... 42 2.2
23gb|AY702706.1| Homo sapiens cytochrome P450, family 2, subfamily... 40 8.8
24gb|AC113957.8| Mus musculus chromosome 15, clone RP23-452M1, com... 40 8.8
25gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 8.8
26emb|AL359672.19| Human DNA sequence from clone RP11-208C17 on ch... 40 8.8
27emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on ch... 40 8.8
28emb|AL157906.8| Human DNA sequence from clone RP5-896C23 on chro... 40 8.8
29gb|AC158151.4| Mus musculus chromosome 1, clone RP24-315B17, com... 40 8.8
30gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 10... 40 8.8
31emb|BX026159.1|CNS08SCJ Single read from an extremity of a full-... 40 8.8
32emb|BX014041.1|CNS08IZX Single read from an extremity of a full-... 40 8.8
33emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 40 8.8
34emb|AJ301650.1|CCO301650 Coturnix coturnix japonica mRNA for thy... 40 8.8
35emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chro... 40 8.8
36gb|AC115903.12| Mus musculus chromosome 1, clone RP24-472L18, co... 40 8.8
37gb|AC110741.5| Homo sapiens chromosome 8, clone RP11-157E21, com... 40 8.8
38gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete... 40 8.8
39gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Pa... 40 8.8
40gb|AC100822.2| Homo sapiens chromosome 8, clone RP11-654O1, comp... 40 8.8
41gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, c... 40 8.8
42gb|AY914797.1| Sulfophobococcus zilligii DNA polymerase gene, co... 40 8.8
43emb|CR405924.1| Gallus gallus finished cDNA, clone ChEST65l3 40 8.8
44gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, com... 40 8.8
45emb|BX930819.2| Gallus gallus finished cDNA, clone ChEST965i5 40 8.8
46emb|BX930688.2| Gallus gallus finished cDNA, clone ChEST972a21 40 8.8
47emb|CR353354.1| Gallus gallus finished cDNA, clone ChEST281k10 40 8.8
48gb|AC016770.10| Homo sapiens BAC clone RP11-564H1 from 2, comple... 40 8.8
49gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosom... 40 8.8
50emb|BX934524.1| Gallus gallus finished cDNA, clone ChEST608a1 40 8.8
51emb|BX934427.1| Gallus gallus finished cDNA, clone ChEST971k17 40 8.8
52emb|BX933436.1| Gallus gallus finished cDNA, clone ChEST44n18 40 8.8
53emb|BX933066.1| Gallus gallus finished cDNA, clone ChEST911g23 40 8.8
54emb|BX930710.1| Gallus gallus finished cDNA, clone ChEST962i11 40 8.8
55gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, comp... 40 8.8
56gb|AY303349.1| Enterobacteria phage RB69, complete genome 40 8.8
57emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in ... 40 8.8
58emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, compl... 40 8.8
59gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complet... 40 8.8
60gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, com... 40 8.8
61emb|AL929007.6| Zebrafish DNA sequence from clone CH211-235E9 in... 40 8.8
62emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chr... 40 8.8
63dbj|AP005019.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                           
Query: 325     atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 384
               ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 8809716 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 8809775

                                  
Query: 385     gacttcggcttttcagtca 403
               ||||| || ||||||||||
Sbjct: 8809776 gactttggattttcagtca 8809794
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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 325   atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 384
             ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 14734 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 14793

                                
Query: 385   gacttcggcttttcagtca 403
             ||||| || ||||||||||
Sbjct: 14794 gactttggattttcagtca 14812
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0052K15
          Length = 156250

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                          
Query: 325    atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 384
              ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 108795 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 108854

                                 
Query: 385    gacttcggcttttcagtca 403
              ||||| || ||||||||||
Sbjct: 108855 gactttggattttcagtca 108873
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>dbj|AK067390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103F03, full
            insert sequence
          Length = 2646

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                        
Query: 325  atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 384
            ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 2196 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 2137

                               
Query: 385  gacttcggcttttcagtca 403
            ||||| || ||||||||||
Sbjct: 2136 gactttggattttcagtca 2118
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>dbj|AK060468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-D08, full
           insert sequence
          Length = 932

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 325 atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 384
           ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 418 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 359

                              
Query: 385 gacttcggcttttcagtca 403
           ||||| || ||||||||||
Sbjct: 358 gactttggattttcagtca 340
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>emb|AL117325.3|HSDA79C13 Human DNA sequence from clone RP6-79C13 on chromosome Xq21.1-21.32
            Contains the 5' end of the gene for premature ovarian
            failure 1B (POF1B), complete sequence
          Length = 83673

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 124  ccagtttatggataaaggaaat 145
            ||||||||||||||||||||||
Sbjct: 3996 ccagtttatggataaaggaaat 3975
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 130     tatggataaaggaaataaaaat 151
               ||||||||||||||||||||||
Sbjct: 1361560 tatggataaaggaaataaaaat 1361539
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>gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome 13, complete
            sequence
          Length = 235237

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 80   aattcagaagaaataactaca 100
            |||||||||||||||||||||
Sbjct: 2555 aattcagaagaaataactaca 2535
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>emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 in linkage group 8,
             complete sequence
          Length = 130762

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    tttatcaaaattcagaagaaa 92
             |||||||||||||||||||||
Sbjct: 42956 tttatcaaaattcagaagaaa 42936
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>gb|AF448140.1| Danio rerio putative cellular retinol-binding protein mRNA,
           complete cds
          Length = 574

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 478 tcagcaccttcagaaactatg 498
           |||||||||||||||||||||
Sbjct: 219 tcagcaccttcagaaactatg 239
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>gb|AF363957.1| Danio rerio cellular retinol-binding protein type II mRNA, complete
           cds
          Length = 527

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 478 tcagcaccttcagaaactatg 498
           |||||||||||||||||||||
Sbjct: 188 tcagcaccttcagaaactatg 208
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>gb|BC062286.1| Danio rerio retinol binding protein 2a, cellular, mRNA (cDNA clone
           MGC:77921 IMAGE:7000527), complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 478 tcagcaccttcagaaactatg 498
           |||||||||||||||||||||
Sbjct: 188 tcagcaccttcagaaactatg 208
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>gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence
          Length = 179810

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     tcagaagaaataactacagag 103
              |||||||||||||||||||||
Sbjct: 124987 tcagaagaaataactacagag 124967
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>gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, complete sequence
          Length = 161449

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   tatggataaaggaaataaaaa 150
             |||||||||||||||||||||
Sbjct: 98150 tatggataaaggaaataaaaa 98170
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>gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, complete sequence
          Length = 184547

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 142    aaataaaaatgccaagcaaaa 162
              |||||||||||||||||||||
Sbjct: 106805 aaataaaaatgccaagcaaaa 106825
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>ref|XM_691341.1| PREDICTED: Danio rerio similar to putative cellular retinol-binding
           protein (LOC568032), mRNA
          Length = 657

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 478 tcagcaccttcagaaactatg 498
           |||||||||||||||||||||
Sbjct: 272 tcagcaccttcagaaactatg 292
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>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
              complete sequence
          Length = 205794

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 478    tcagcaccttcagaaactatg 498
              |||||||||||||||||||||
Sbjct: 143184 tcagcaccttcagaaactatg 143164
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>gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosome 13, complete
             sequence
          Length = 214193

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    aattcagaagaaataactaca 100
             |||||||||||||||||||||
Sbjct: 86116 aattcagaagaaataactaca 86136
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>gb|AC096654.1| Homo sapiens BAC clone RP11-17I18 from 2, complete sequence
          Length = 153396

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 78    aaaattcagaagaaataactacagagatg 106
             |||||||| |||||||||||| |||||||
Sbjct: 47991 aaaattcaaaagaaataactaaagagatg 47963
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>emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 in linkage group 15,
              complete sequence
          Length = 152072

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 478    tcagcaccttcagaaactatg 498
              |||||||||||||||||||||
Sbjct: 137037 tcagcaccttcagaaactatg 137057
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>emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in linkage group 15,
              complete sequence
          Length = 154452

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 478    tcagcaccttcagaaactatg 498
              |||||||||||||||||||||
Sbjct: 117030 tcagcaccttcagaaactatg 117050
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>ref|NM_153004.1| Danio rerio retinol binding protein 2a, cellular (rbp2a), mRNA
          Length = 574

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 478 tcagcaccttcagaaactatg 498
           |||||||||||||||||||||
Sbjct: 219 tcagcaccttcagaaactatg 239
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>gb|AY702706.1| Homo sapiens cytochrome P450, family 2, subfamily C, polypeptide 9
            (CYP2C9) gene, complete cds
          Length = 60723

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 125  cagtttatggataaaggaaataaa 148
            ||||||||||||||| ||||||||
Sbjct: 2303 cagtttatggataaatgaaataaa 2326
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>gb|AC113957.8| Mus musculus chromosome 15, clone RP23-452M1, complete sequence
          Length = 168824

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    ttcactgtcctcacattcca 535
              ||||||||||||||||||||
Sbjct: 130104 ttcactgtcctcacattcca 130123
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 72      tttatcaaaattcagaagaa 91
               ||||||||||||||||||||
Sbjct: 1022541 tttatcaaaattcagaagaa 1022560
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>emb|AL359672.19| Human DNA sequence from clone RP11-208C17 on chromosome 10 Contains
            the CYP2C9 gene for cytochrome P450 family 2 subfamily C
            polypeptide 9, a mitochondrial NADH dehydrogenase 4
            (MTND4) pseudogene, a pseudogene similar to part of
            cytochrome P450 family 2 subfamily C, a novel pseudogene
            and the CYP2C8 gene for cytochrome P450 family 2
            subfamily C polypeptide 8, complete sequence
          Length = 143181

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 125  cagtttatggataaaggaaataaa 148
            ||||||||||||||| ||||||||
Sbjct: 2372 cagtttatggataaatgaaataaa 2395
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>emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on chromosome 10 Contains a
             pseudogene similar to part of glycogen synthase kinase 3
             and a ubiquitin-conjugating enzyme pseudogene, complete
             sequence
          Length = 178942

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    tatcaaaattcagaagaaataact 97
             ||||||||| ||||||||||||||
Sbjct: 70188 tatcaaaatacagaagaaataact 70211
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>emb|AL157906.8| Human DNA sequence from clone RP5-896C23 on chromosome 1p22.3-31.2
             Contains GSSs and STSs, complete sequence
          Length = 115705

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   gataaaggaaataaaaatgc 153
             ||||||||||||||||||||
Sbjct: 91187 gataaaggaaataaaaatgc 91206
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>gb|AC158151.4| Mus musculus chromosome 1, clone RP24-315B17, complete sequence
          Length = 184935

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 416   cttgagcatcctttggggttgaag 439
             ||||||| ||||||||||||||||
Sbjct: 46303 cttgagcttcctttggggttgaag 46326
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>gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 100 of the complete
             genome
          Length = 20172

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tttatcaaaattcagaagaa 91
             ||||||||||||||||||||
Sbjct: 14139 tttatcaaaattcagaagaa 14158
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>emb|BX026159.1|CNS08SCJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA4BD03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 150

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 471 gtcaacttcagcaccttcag 490
           ||||||||||||||||||||
Sbjct: 12  gtcaacttcagcaccttcag 31
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>emb|BX014041.1|CNS08IZX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA21AD01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 745

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 471 gtcaacttcagcaccttcag 490
           ||||||||||||||||||||
Sbjct: 212 gtcaacttcagcaccttcag 231
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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tttatcaaaattcagaagaa 91
             ||||||||||||||||||||
Sbjct: 35994 tttatcaaaattcagaagaa 36013
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>emb|AJ301650.1|CCO301650 Coturnix coturnix japonica mRNA for thymosin beta (ORF1)
          Length = 669

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 132 tgttcttctcctccgtgttg 113
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>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the
             3' end of the Dbccr1 gene for deleted in bladder cancer
             chromosome region candidate 1 (human), complete sequence
          Length = 203865

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tgacaaagcaaactgaaaca 223
             ||||||||||||||||||||
Sbjct: 26642 tgacaaagcaaactgaaaca 26623
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>gb|AC115903.12| Mus musculus chromosome 1, clone RP24-472L18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 416   cttgagcatcctttggggttgaag 439
             ||||||| ||||||||||||||||
Sbjct: 30991 cttgagcttcctttggggttgaag 31014
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>gb|AC110741.5| Homo sapiens chromosome 8, clone RP11-157E21, complete sequence
          Length = 156262

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   agtttatggataaaggaaataaaa 149
             |||||||||||||| |||||||||
Sbjct: 44545 agtttatggataaatgaaataaaa 44522
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>gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete sequence
          Length = 111147

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 472   tcaacttcagcaccttcagaaactatgg 499
             |||||||||||| ||||||||| |||||
Sbjct: 91763 tcaacttcagcaacttcagaaattatgg 91736
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>gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 143444

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   cagtgtgtccagtttatgga 135
             ||||||||||||||||||||
Sbjct: 79218 cagtgtgtccagtttatgga 79199
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>gb|AC100822.2| Homo sapiens chromosome 8, clone RP11-654O1, complete sequence
          Length = 186380

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 573   cccagcttcaacatcaactc 592
             ||||||||||||||||||||
Sbjct: 85244 cccagcttcaacatcaactc 85263
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>gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, complete sequence
          Length = 184875

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    tggcttgatcaggtttcact 516
              ||||||||||||||||||||
Sbjct: 130543 tggcttgatcaggtttcact 130562
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>gb|AY914797.1| Sulfophobococcus zilligii DNA polymerase gene, complete cds
          Length = 2640

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 572 tcccagcttcaacatcaact 591
           ||||||||||||||||||||
Sbjct: 33  tcccagcttcaacatcaact 52
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>emb|CR405924.1| Gallus gallus finished cDNA, clone ChEST65l3
          Length = 806

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 142 tgttcttctcctccgtgttg 123
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>gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, complete sequence
          Length = 211632

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   ggataaaggaaataaaaatg 152
             ||||||||||||||||||||
Sbjct: 97787 ggataaaggaaataaaaatg 97806
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>emb|BX930819.2| Gallus gallus finished cDNA, clone ChEST965i5
          Length = 699

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 146 tgttcttctcctccgtgttg 127
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>emb|BX930688.2| Gallus gallus finished cDNA, clone ChEST972a21
          Length = 693

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 140 tgttcttctcctccgtgttg 121
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>emb|CR353354.1| Gallus gallus finished cDNA, clone ChEST281k10
          Length = 630

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 133 tgttcttctcctccgtgttg 114
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>gb|AC016770.10| Homo sapiens BAC clone RP11-564H1 from 2, complete sequence
          Length = 191919

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   agtttatggataaaggaaat 145
             ||||||||||||||||||||
Sbjct: 81162 agtttatggataaaggaaat 81181
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>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete
             sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   ggataaaggaaataaaaatg 152
             ||||||||||||||||||||
Sbjct: 86887 ggataaaggaaataaaaatg 86868
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>emb|BX934524.1| Gallus gallus finished cDNA, clone ChEST608a1
          Length = 558

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 122 tgttcttctcctccgtgttg 103
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>emb|BX934427.1| Gallus gallus finished cDNA, clone ChEST971k17
          Length = 696

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 140 tgttcttctcctccgtgttg 121
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>emb|BX933436.1| Gallus gallus finished cDNA, clone ChEST44n18
          Length = 718

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 578 tgttcttctcctccgtgttg 597
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>emb|BX933066.1| Gallus gallus finished cDNA, clone ChEST911g23
          Length = 698

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 143 tgttcttctcctccgtgttg 124
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>emb|BX930710.1| Gallus gallus finished cDNA, clone ChEST962i11
          Length = 692

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 542 tgttcttctcctccgtgttg 561
           ||||||||||||||||||||
Sbjct: 142 tgttcttctcctccgtgttg 123
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>gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, complete sequence
          Length = 193302

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    ggataaaggaaataaaaatg 152
              ||||||||||||||||||||
Sbjct: 159915 ggataaaggaaataaaaatg 159934
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>gb|AY303349.1| Enterobacteria phage RB69, complete genome
          Length = 167560

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaaattcagaagaaataact 97
             ||||||||||||||||||||
Sbjct: 94911 aaaattcagaagaaataact 94930
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>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1,
             complete sequence
          Length = 165355

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 589   actccactagatgtatcgtttcct 612
             ||||||||||| ||||||||||||
Sbjct: 66242 actccactagaggtatcgtttcct 66219
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>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence
          Length = 298406

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    atcaggtttcacttcactgt 523
              ||||||||||||||||||||
Sbjct: 257926 atcaggtttcacttcactgt 257945
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>gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complete sequence
          Length = 206690

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 512    tcacttcactgtcctcacat 531
              ||||||||||||||||||||
Sbjct: 168028 tcacttcactgtcctcacat 168009
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>gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, complete sequence
          Length = 174900

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   tcacttcactgtcctcacat 531
             ||||||||||||||||||||
Sbjct: 68153 tcacttcactgtcctcacat 68134
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>emb|AL929007.6| Zebrafish DNA sequence from clone CH211-235E9 in linkage group 1,
              complete sequence
          Length = 187464

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     tcaaaattcagaagaaataa 95
              ||||||||||||||||||||
Sbjct: 101320 tcaaaattcagaagaaataa 101301
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>emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chromosome 2, complete
              sequence
          Length = 198497

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    ttcccaagctcctttgcaat 204
              ||||||||||||||||||||
Sbjct: 174363 ttcccaagctcctttgcaat 174344
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>dbj|AP005019.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-169D4, complete
             sequences
          Length = 98501

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   acctctctgatcttcccaag 192
             ||||||||||||||||||||
Sbjct: 84118 acctctctgatcttcccaag 84137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,682,545
Number of Sequences: 3902068
Number of extensions: 6682545
Number of successful extensions: 146049
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145815
Number of HSP's gapped (non-prelim): 234
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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