Clone Name | rbasd3p07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 948 bits (478), Expect = 0.0 Identities = 510/518 (98%), Gaps = 2/518 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 76968 taaaacatatacgtaaaacacaatctactaa-attaattctttgatctcaatttcgccta 77026 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 77027 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaatcctctca 77086 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77087 attcctcggcaatcgcgccaaaaactcgagttccttttggattgcctttttgatcaatta 77146 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 77147 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaactctttac 77206 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77207 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 77266 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77267 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 77326 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 77327 ctcctatgactcgaatacacatcaattttcgagctccactattatcggctacatttaaaa 77386 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77387 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 77445 Query: 491 gaaagaaatattgtctttccagaaagaaaaaccgggca 528 |||||||||||||||||||||||||||||||||||||| Sbjct: 77446 gaaagaaatattgtctttccagaaagaaaaaccgggca 77483 Score = 167 bits (84), Expect = 6e-38 Identities = 101/104 (97%), Gaps = 2/104 (1%) Strand = Plus / Plus Query: 537 cttccataccccttttagggttctatatctctaatcgaataaattgactttcgtatgggc 596 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 77496 cttccataccccttttagggttctatatctctaatcgaataaattgac-ttcgtatgggc 77554 Query: 597 atttttactggccgctatggagatagctgctctagctacagttt 640 | |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 77555 a-ttttactggcagctatggagatagctgctctagctacagttt 77597
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 833 bits (420), Expect = 0.0 Identities = 581/631 (92%), Gaps = 6/631 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| | ||||||||||||||| || |||||||||||| || ||| ||| Sbjct: 74 taaagcatatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtcta 131 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | Sbjct: 132 ctagtatttataatacttcaggagctaatgaaactattttagtataattcaattctctta 191 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| | Sbjct: 192 attcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatga 251 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 |||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 252 taactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttac 311 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 312 gtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 371 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 372 cgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcgg 431 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 432 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 491 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 492 gggtc-tgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggat 550 Query: 491 gaaagaaatattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct- 549 ||||||||||||||||||||||||||||||||| || |||| |||| ||| Sbjct: 551 gaaagaaatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcctt 610 Query: 550 tttagggttctatatctctaatcgaataaattgactttcgtatgggcatttttactggcc 609 ||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct: 611 tttggggttctatatctctaatcgaagaaattgac-ttcgtatgggca-ttttactggca 668 Query: 610 gctatggagatagctgctctagctacagttt 640 ||||| ||||||||||||||||||||||||| Sbjct: 669 gctatagagatagctgctctagctacagttt 699
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 833 bits (420), Expect = 0.0 Identities = 581/631 (92%), Gaps = 6/631 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| | ||||||||||||||| || |||||||||||| || ||| ||| Sbjct: 79631 taaagcatatacgtgagacacaatctactaatttt--ttctttgatctatatctcgtcta 79688 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | Sbjct: 79689 ctagtatttataatacttcaggagctaatgaaactattttagtataattcaattctctta 79748 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| | Sbjct: 79749 attcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatga 79808 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 |||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 79809 taactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttac 79868 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 79869 gtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 79928 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 79929 cgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcgg 79988 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 79989 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 80048 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 80049 gggtc-tgaggttgaatcatattattttgatttccatttgttatttcaatgcaaaaggat 80107 Query: 491 gaaagaaatattgtctttccagaaagaaaaaccgggcannnnnnnncttccatacccct- 549 ||||||||||||||||||||||||||||||||| || |||| |||| ||| Sbjct: 80108 gaaagaaatattgtctttccagaaagaaaaaccaggggttttttatcttcaatactcctt 80167 Query: 550 tttagggttctatatctctaatcgaataaattgactttcgtatgggcatttttactggcc 609 ||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||| Sbjct: 80168 tttggggttctatatctctaatcgaagaaattgac-ttcgtatgggca-ttttactggca 80225 Query: 610 gctatggagatagctgctctagctacagttt 640 ||||| ||||||||||||||||||||||||| Sbjct: 80226 gctatagagatagctgctctagctacagttt 80256
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 787 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 730 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 729 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 670 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 669 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 610 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 609 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 550 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 549 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 490 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 489 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 430 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 429 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 370 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 311 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 310 gaaagaaatattgtctttccagaaagaagaacc 278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 239 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 182 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 181 tagctactctagctacagttt 161
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1529 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1472 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1471 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1412 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1411 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1352 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1351 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1292 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1291 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1232 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1231 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1172 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1171 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1112 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 1053 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 1052 gaaagaaatattgtctttccagaaagaagaacc 1020 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 981 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 924 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 923 tagctactctagctacagttt 903
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1529 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1472 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1471 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1412 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1411 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1352 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1351 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1292 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1291 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1232 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1231 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1172 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1171 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1112 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 1053 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 1052 gaaagaaatattgtctttccagaaagaagaacc 1020 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 981 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 924 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 923 tagctactctagctacagttt 903
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77196 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77253 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77254 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77313 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77314 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77373 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77374 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77433 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77434 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77493 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77494 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77553 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77554 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77613 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77614 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 77672 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 77673 gaaagaaatattgtctttccagaaagaagaacc 77705 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 77743 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 77800 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 77801 tagctgctctagctacagttt 77821
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77196 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77253 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77254 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77313 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77314 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77373 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77374 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77433 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77434 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77493 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77494 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77553 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77554 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77613 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77614 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 77672 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 77673 gaaagaaatattgtctttccagaaagaagaacc 77705 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 77743 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 77800 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 77801 tagctgctctagctacagttt 77821
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77137 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77194 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77195 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77254 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77255 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77314 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77315 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77374 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77375 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77434 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77435 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77494 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77495 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77554 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77555 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 77613 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 77614 gaaagaaatattgtctttccagaaagaagaacc 77646 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 77687 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 77744 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 77745 tagctactctagctacagttt 77765
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 53207 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 53264 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 53265 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 53324 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 53325 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 53384 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 53385 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 53444 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 53445 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 53504 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 53505 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 53564 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 53565 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 53624 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53625 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 53683 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 53684 gaaagaaatattgtctttccagaaagaagaacc 53716 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 53754 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 53811 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 53812 tagctgctctagctacagttt 53832
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 126035 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 126092 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 126093 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 126152 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 126153 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 126212 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 126213 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 126272 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 126273 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 126332 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 126333 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 126392 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 126393 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 126452 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126453 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 126511 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 126512 gaaagaaatattgtctttccagaaagaagaacc 126544 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 126582 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 126639 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 126640 tagctgctctagctacagttt 126660
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77183 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77240 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77241 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77300 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77301 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77360 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77361 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77420 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77421 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77480 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77481 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77540 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 77541 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 77600 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77601 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 77659 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 77660 gaaagaaatattgtctttccagaaagaagaacc 77692 Score = 65.9 bits (33), Expect = 2e-07 Identities = 71/81 (87%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 77730 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 77787 Query: 620 tagctgctctagctacagttt 640 ||||| |||||||||||||| Sbjct: 77788 tagctcgtctagctacagttt 77808
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 73597 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 73540 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 73539 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 73480 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 73479 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 73420 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 73419 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 73360 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 73359 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 73300 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 73299 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 73240 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 73239 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 73180 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73179 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 73121 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 73120 gaaagaaatattgtctttccagaaagaagaacc 73088 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 73009 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 72952 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 72951 tagctactctagctacagttt 72931
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 75384 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 75441 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 75442 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 75501 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 75502 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 75561 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 75562 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 75621 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 75622 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 75681 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 75682 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 75741 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 75742 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 75801 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75802 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 75860 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 75861 gaaagaaatattgtctttccagaaagaagaacc 75893 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 75932 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 75989 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 75990 tagctactctagctacagttt 76010
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9448 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9505 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9506 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9565 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9566 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9625 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9626 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9685 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9686 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9745 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9746 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9805 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9806 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9865 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9866 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 9924 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 9925 gaaagaaatattgtctttccagaaagaagaacc 9957 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 9996 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 10053 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 10054 tagctactctagctacagttt 10074
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9192524 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9192467 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9192466 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9192407 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9192406 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9192347 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9192346 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9192287 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9192286 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9192227 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9192226 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9192167 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9192166 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9192107 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9192106 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 9192048 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 9192047 gaaagaaatattgtctttccagaaagaagaacc 9192015 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9115571 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9115514 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9115513 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9115454 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9115453 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9115394 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9115393 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9115334 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9115333 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9115274 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9115273 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9115214 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9115213 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9115154 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9115153 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 9115095 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 9115094 gaaagaaatattgtctttccagaaagaagaacc 9115062 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 254 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 304 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 17722552 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 17722502 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 245 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 300 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 2072703 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 2072762 Query: 301 tggggcaatgcgtctttgattaca 324 | ||||| ||| |||||| ||||| Sbjct: 2072763 ttgggcactgcttctttggttaca 2072786 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 9191936 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 9191879 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 9191878 tagctactctagctacagttt 9191858 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 9114983 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 9114926 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 9114925 tagctactctagctacagttt 9114905
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 10368992 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 10369049 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10369050 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 10369109 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 10369110 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 10369169 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 10369170 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 10369229 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10369230 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 10369289 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 10369290 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 10369349 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 10369350 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 10369409 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369410 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 10369468 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 10369469 gaaagaaatattgtctttccagaaagaagaacc 10369501 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 237 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 292 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14021582 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14021523 Query: 293 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 352 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14021522 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14021463 Query: 353 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 397 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14021462 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14021421 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 10369540 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 10369597 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 10369598 tagctactctagctacagttt 10369618
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 9259866 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 9259809 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9259808 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 9259749 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 9259748 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 9259689 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 9259688 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 9259629 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 9259628 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 9259569 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 9259568 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 9259509 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9259508 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 9259449 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9259448 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 9259390 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 9259389 gaaagaaatattgtctttccagaaagaagaacc 9259357 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 177 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 236 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 10791213 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 10791154 Query: 237 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 296 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 10791153 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 10791094 Query: 297 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 346 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10791093 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 10791044 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 17206218 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 17206277 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 17206278 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 17206336 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 17206337 actgttgtcatagcgtattattataccgtcttcgcatttgaa 17206378 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 9259318 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 9259261 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 9259260 tagctactctagctacagttt 9259240
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 12755748 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 12755805 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 12755806 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 12755865 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 12755866 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 12755925 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 12755926 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 12755985 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12755986 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 12756045 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 12756046 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 12756105 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 12756106 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 12756165 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12756166 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 12756224 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 12756225 gaaagaaatattgtctttccagaaagaagaacc 12756257 Score = 749 bits (378), Expect = 0.0 Identities = 481/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 19545833 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 19545776 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 19545775 ctagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctca 19545716 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||| | |||| ||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 19545715 attcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatga 19545656 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 19545655 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 19545596 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 19545595 atgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggcactg 19545536 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 19545535 cgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactagcag 19545476 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 19545475 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 19545416 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19545415 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 19545357 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 19545356 gaaagaaatattgtctttccagaaagaagaacc 19545324 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 192 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 251 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3036155 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 3036096 Query: 252 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3036095 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 3036036 Query: 312 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 371 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3036035 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 3035976 Query: 372 tcctatgactcgaatacacat 392 ||||||||||||||||||||| Sbjct: 3035975 tcctatgactcgaatacacat 3035955 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 97 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 156 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 3109053 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 3109111 Query: 157 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 216 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 3109112 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 3109170 Query: 217 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 276 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 3109171 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 3109229 Query: 277 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 336 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 3109230 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 3109289 Query: 337 tcaccaatacgagcatatcgctgattaccagcagctccta 376 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 3109290 tcatcaatatgagcatattgttgattactagcagcaccta 3109329 Score = 101 bits (51), Expect = 3e-18 Identities = 61/63 (96%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 419 ctacatttaaaagggtcttgaggttgaatcatattattttgatttcaatttgttatttca 478 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3109364 ctacatttaaaagggt-ttgaggttgaatcatattattttgatgtcaatttgttatttca 3109422 Query: 479 atg 481 ||| Sbjct: 3109423 atg 3109425 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 12756295 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 12756352 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 12756353 tagctgctctagctacagttt 12756373 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 19545285 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 19545228 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||| ||||| Sbjct: 19545227 tagctgctctagctatagttt 19545207 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 tttcaatttgttatttcaatgcaaa 485 ||||||||||| ||||||||||||| Sbjct: 4108954 tttcaatttgtaatttcaatgcaaa 4108978
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 71079 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 71022 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 71021 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 70962 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 70961 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 70902 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 70901 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 70842 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 70841 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 70782 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70781 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 70722 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 70721 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 70662 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70661 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 70603 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 70602 gaaagaaatattgtctttccagaaagaagaacc 70570 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 70531 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 70474 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 70473 tagctactctagctacagttt 70453
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1537 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1480 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1479 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1420 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1419 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1360 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1359 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1300 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1299 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1240 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1239 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1180 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1179 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1120 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 1061 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 1060 gaaagaaatattgtctttccagaaagaagaacc 1028 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 990 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 933 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 932 tagctgctctagctacagttt 912
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1752 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1695 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1694 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1635 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1634 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1575 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1574 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1515 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1514 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1455 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1454 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1395 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 1394 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 1335 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 1276 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 1275 gaaagaaatattgtctttccagaaagaagaacc 1243 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 1205 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 1148 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 1147 tagctgctctagctacagttt 1127
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 797 bits (402), Expect = 0.0 Identities = 487/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 10375031 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 10375088 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10375089 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 10375148 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 10375149 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 10375208 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 10375209 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 10375268 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 10375269 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 10375328 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 10375329 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 10375388 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 10375389 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 10375448 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10375449 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 10375507 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 10375508 gaaagaaatattgtctttccagaaagaagaacc 10375540 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 237 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 292 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 14029824 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 14029765 Query: 293 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 352 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14029764 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 14029705 Query: 353 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 397 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 14029704 atcagtgattac---cagctcctaagattcgaatacatatcaatt 14029663 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 10375579 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 10375636 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 10375637 tagctactctagctacagttt 10375657
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 5656646 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 5656703 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 5656704 ctagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctca 5656763 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 5656764 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 5656823 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 5656824 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 5656883 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5656884 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 5656943 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5656944 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 5657003 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 5657004 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 5657063 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657064 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 5657122 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 5657123 gaaagaaatattgtctttccagaaagaagaacc 5657155 Score = 391 bits (197), Expect = e-105 Identities = 260/280 (92%), Gaps = 2/280 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 20514158 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 20514215 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 20514216 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 20514275 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 20514276 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 20514335 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 20514336 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 20514395 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttc 290 |||||||||||||||||||||||||||||||||||||||| Sbjct: 20514396 atgtacgtacaattacagctcgaattacttcggatctttc 20514435 Score = 65.9 bits (33), Expect = 2e-07 Identities = 68/77 (88%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||| |||| ||||| |||||||| | Sbjct: 5657194 tatatttctaaccgaagaaattgactt-cgtatgggca-ttttgctggcagctatggaaa 5657251 Query: 620 tagctgctctagctaca 636 |||||||| |||||||| Sbjct: 5657252 tagctgctatagctaca 5657268 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 104 ctattttggtaaaattcaattctctcaattc 134 ||||||| ||||||||||||||||||||||| Sbjct: 25823760 ctattttagtaaaattcaattctctcaattc 25823730
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 33496962 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 33497019 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 33497020 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 33497079 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 33497080 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 33497139 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 33497140 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 33497199 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 33497200 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 33497259 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 33497260 catctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 33497319 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 33497320 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 33497379 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33497380 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 33497438 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 33497439 gaaagaaatattgtctttccagaaagaagaacc 33497471 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 166 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 225 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 30976459 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 30976400 Query: 226 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 285 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 30976399 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 30976340 Query: 286 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 345 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 30976339 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 30976280 Query: 346 cgagcatat 354 |||| |||| Sbjct: 30976279 cgagtatat 30976271 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 33497509 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 33497566 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 33497567 tagctactctagctacagttt 33497587 Score = 69.9 bits (35), Expect = 1e-08 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 39109319 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 39109268 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 39109267 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 39109208 Query: 268 gctc 271 |||| Sbjct: 39109207 gctc 39109204 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgat 184 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39108053 ccaaaaactcgagttccttttggatttccttcttgat 39108017 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgat 184 ||||||||||||||||||||||| || |||| ||||| Sbjct: 39103979 ccaaaaactcgagttccttttggatttccttcttgat 39103943 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acaatctactaatattaatt 49 |||||||||||||||||||| Sbjct: 32571860 acaatctactaatattaatt 32571879
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 42159 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 42216 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 42217 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 42276 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 42277 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 42336 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 42337 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 42396 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 42397 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 42456 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 42457 catctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 42516 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 42517 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 42576 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42577 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 42635 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 42636 gaaagaaatattgtctttccagaaagaagaacc 42668 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 42706 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 42763 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 42764 tagctactctagctacagttt 42784
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 786 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 729 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 728 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 669 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 668 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 609 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 608 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 549 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 548 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggagcactg 489 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 488 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 429 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 428 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 369 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 310 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 309 gaaagaaatattgtctttccagaaagaagaacc 277 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 239 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 182 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 181 tagctgctctagctacagttt 161
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 5656639 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 5656696 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 5656697 ctagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctca 5656756 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 5656757 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 5656816 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 5656817 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 5656876 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 5656877 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 5656936 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5656937 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 5656996 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 5656997 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 5657056 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657057 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 5657115 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 5657116 gaaagaaatattgtctttccagaaagaagaacc 5657148 Score = 391 bits (197), Expect = e-105 Identities = 260/280 (92%), Gaps = 2/280 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 20440372 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 20440429 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 20440430 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 20440489 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 20440490 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 20440549 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 20440550 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 20440609 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttc 290 |||||||||||||||||||||||||||||||||||||||| Sbjct: 20440610 atgtacgtacaattacagctcgaattacttcggatctttc 20440649 Score = 65.9 bits (33), Expect = 2e-07 Identities = 68/77 (88%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||| |||| ||||| |||||||| | Sbjct: 5657187 tatatttctaaccgaagaaattgactt-cgtatgggca-ttttgctggcagctatggaaa 5657244 Query: 620 tagctgctctagctaca 636 |||||||| |||||||| Sbjct: 5657245 tagctgctatagctaca 5657261 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 104 ctattttggtaaaattcaattctctcaattc 134 ||||||| ||||||||||||||||||||||| Sbjct: 25751936 ctattttagtaaaattcaattctctcaattc 25751906
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 11169 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 11226 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct: 11227 ctagtatttataatacttcaggagctaatgaaactattgtagtaaaattcaattctctca 11286 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 11287 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 11346 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 11347 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 11406 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 11407 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 11466 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 11467 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 11526 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 11527 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 11586 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11587 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 11645 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 11646 gaaagaaatattgtctttccagaaagaagaacc 11678 Score = 65.9 bits (33), Expect = 2e-07 Identities = 68/77 (88%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||| |||| ||||| |||||||| | Sbjct: 11717 tatatttctaaccgaagaaattgactt-cgtatgggca-ttttgctggcagctatggaaa 11774 Query: 620 tagctgctctagctaca 636 |||||||| |||||||| Sbjct: 11775 tagctgctatagctaca 11791
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 789 bits (398), Expect = 0.0 Identities = 486/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 77139 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 77196 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 77197 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 77256 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 77257 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 77316 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77317 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77376 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 77377 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 77436 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 77437 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 77496 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct: 77497 ctcctatgactcgaatacacatcaattttcgagctccgctgttatctgctacatttaaaa 77556 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77557 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 77615 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 77616 gaaagaaatattgtctttccagaaagaagaacc 77648 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 77687 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 77744 Query: 620 tagctgctctagctacagttt 640 ||||| ||||||||||||||| Sbjct: 77745 tagctactctagctacagttt 77765
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1527 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1470 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1469 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1410 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1409 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1350 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1349 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1290 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1289 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1230 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1229 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1170 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 1169 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 1110 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 1051 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||| |||||||||||||||| |||| Sbjct: 1050 gaaagaaatatcgtctttccagaaagaagaacc 1018 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| || | |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 980 tatatttctaaccggagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 923 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 922 tagctgctctagctacagttt 902
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1527 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1470 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1469 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1410 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1409 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1350 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1349 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1290 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1289 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 1230 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1229 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 1170 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 1169 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 1110 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 1051 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||| |||||||||||||||| |||| Sbjct: 1050 gaaagaaatatcgtctttccagaaagaagaacc 1018 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| || | |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 980 tatatttctaaccggagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 923 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 922 tagctgctctagctacagttt 902
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 27922679 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 27922736 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 27922737 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 27922796 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 27922797 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 27922856 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 27922857 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 27922916 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 27922917 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 27922976 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 27922977 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 27923036 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 27923037 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 27923096 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27923097 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 27923155 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||| |||||||||||||||| |||| Sbjct: 27923156 gaaagaaatatcgtctttccagaaagaagaacc 27923188 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 100 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 159 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 4509148 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 4509089 Query: 160 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 219 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 4509088 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 4509030 Query: 220 attataccgtcttcgcatttgaa 242 ||||||||||||||||||||||| Sbjct: 4509029 attataccgtcttcgcatttgaa 4509007 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| || | |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 27923226 tatatttctaaccggagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 27923283 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 27923284 tagctgctctagctacagttt 27923304
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 23181906 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 23181849 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 23181848 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 23181789 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||| | Sbjct: 23181788 attcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatga 23181729 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 23181728 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 23181669 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 23181668 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 23181609 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 23181608 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 23181549 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 23181548 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 23181489 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23181488 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 23181430 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 23181429 gaaagaaatattgtctttccagaaagaagaacc 23181397 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 23181359 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 23181302 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 23181301 tagctgctctagctacagttt 23181281
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 86037 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 86094 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 86095 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 86154 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 86155 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 86214 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 86215 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 86274 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 86275 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 86334 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 86335 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 86394 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 86395 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 86454 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86455 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 86513 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||| |||||||||||||||| |||| Sbjct: 86514 gaaagaaatatcgtctttccagaaagaagaacc 86546 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| || | |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 86584 tatatttctaaccggagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 86641 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 86642 tagctgctctagctacagttt 86662
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 12013 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 12070 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 12071 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 12130 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 12131 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 12190 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 12191 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 12250 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 12310 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 12311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 12370 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct: 12371 ctcctatgactcgaatacacatcaatttttgagctccactgttatctgctacatttaaaa 12430 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12431 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 12489 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||| |||||||||||||||| |||| Sbjct: 12490 gaaagaaatatcgtctttccagaaagaagaacc 12522 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| || | |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 12560 tatatttctaaccggagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 12617 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 12618 tagctgctctagctacagttt 12638
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 132554 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 132497 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 132496 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 132437 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||| | Sbjct: 132436 attcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatga 132377 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 132376 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 132317 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 132316 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 132257 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 132256 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 132197 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 132196 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 132137 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132136 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 132078 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 132077 gaaagaaatattgtctttccagaaagaagaacc 132045 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 132007 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 131950 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 131949 tagctgctctagctacagttt 131929
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 781 bits (394), Expect = 0.0 Identities = 485/513 (94%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 16668 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 16611 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 16610 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 16551 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||| | Sbjct: 16550 attcctcggcgatcgtgccaaaaacgtgagttccttttggatttcctttttgatcaatga 16491 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 16490 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 16431 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 16430 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 16371 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 16370 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcag 16311 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 16310 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 16251 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16250 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 16192 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 16191 gaaagaaatattgtctttccagaaagaagaacc 16159 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 16121 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 16064 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 16063 tagctgctctagctacagttt 16043
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 757 bits (382), Expect = 0.0 Identities = 482/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 787 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 730 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 729 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 670 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 669 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 610 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 609 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 550 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 549 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 490 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 489 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 430 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 429 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 370 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 369 gggtc-tgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggat 311 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 310 gaaagaaatattgtctttccagaaagaagaacc 278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| || || |||||||| | Sbjct: 239 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctagcagctatggaaa 182 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 181 tagctgctctagctacagttt 161
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 757 bits (382), Expect = 0.0 Identities = 482/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1515 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1458 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1457 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1398 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1397 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1338 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1337 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1278 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1277 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 1218 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1217 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 1158 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 1157 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 1098 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1097 gggtc-tgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggat 1039 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 1038 gaaagaaatattgtctttccagaaagaagaacc 1006 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| || || |||||||| | Sbjct: 967 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctagcagctatggaaa 910 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 909 tagctgctctagctacagttt 889
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 757 bits (382), Expect = 0.0 Identities = 482/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1730 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1673 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1672 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1613 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1612 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 1553 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 1552 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 1493 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1492 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 1433 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 1432 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 1373 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 1372 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 1313 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1312 gggtc-tgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggat 1254 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 1253 gaaagaaatattgtctttccagaaagaagaacc 1221 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| || || |||||||| | Sbjct: 1182 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctagcagctatggaaa 1125 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 1124 tagctgctctagctacagttt 1104
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 757 bits (382), Expect = 0.0 Identities = 482/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 11896687 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 11896630 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 11896629 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 11896570 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 11896569 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 11896510 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 11896509 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 11896450 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11896449 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 11896390 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 11896389 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 11896330 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 11896329 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 11896270 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 11896269 gggtc-tgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggat 11896211 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 11896210 gaaagaaatattgtctttccagaaagaagaacc 11896178 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 20862633 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 20862692 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 20862693 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 20862751 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 20862752 attgttgtcatagcgtattattataccgtcttcgcatttgaa 20862793 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 443 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14456068 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 14456009 Query: 503 gtctttccagaaagaaaaacc 523 |||||||||||||||| |||| Sbjct: 14456008 gtctttccagaaagaagaacc 14455988 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 14455950 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 14455893 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 14455892 tagctgctctagctacagttt 14455872 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| || || |||||||| | Sbjct: 11896139 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctagcagctatggaaa 11896082 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 11896081 tagctgctctagctacagttt 11896061
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 757 bits (382), Expect = 0.0 Identities = 482/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 78177 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 78120 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 78119 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 78060 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 78059 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 78000 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 77999 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 77940 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 77939 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 77880 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 77879 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 77820 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 77819 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 77760 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 77759 gggtc-tgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggat 77701 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 77700 gaaagaaatattgtctttccagaaagaagaacc 77668 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| || || |||||||| | Sbjct: 77629 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctagcagctatggaaa 77572 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 77571 tagctgctctagctacagttt 77551
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 757 bits (382), Expect = 0.0 Identities = 482/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 1167 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 1110 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1109 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 1050 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 1049 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 990 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 989 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 930 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 929 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcacta 870 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 869 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgactactagcag 810 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct: 809 ctcctatgactcgaatacacattaattttcgagctccagtgttatctgctacatttaaaa 750 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 749 gggtc-tgaggttgaatcatattattttgatttcaatttattatttcaatgcaaaaggat 691 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 690 gaaagaaatattgtctttccagaaagaagaacc 658 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| || || |||||||| | Sbjct: 619 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctagcagctatggaaa 562 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 561 tagctgctctagctacagttt 541
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 749 bits (378), Expect = 0.0 Identities = 481/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 146545 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 146488 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 146487 ctagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctca 146428 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||| | |||| ||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 146427 attcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatga 146368 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 146367 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 146308 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 146307 atgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggcactg 146248 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 146247 cgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactagcag 146188 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 146187 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 146128 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146127 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 146069 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 146068 gaaagaaatattgtctttccagaaagaagaacc 146036 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 145997 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 145940 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||| ||||| Sbjct: 145939 tagctgctctagctatagttt 145919
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 749 bits (378), Expect = 0.0 Identities = 481/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 5732 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 5675 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 5674 ctagtatttataatacttcaggagctaatgaaactagtttagtaaaattcaattctctca 5615 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||| | |||| ||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 5614 attcctcgacgatcgtgccaaaaacgcgagttccttttggatttcctttttgatcaatga 5555 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 5554 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 5495 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 5494 atgtacgtacaattacagctcgaattacttgagatctttctagaggcatttggggcactg 5435 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 5434 cgtctttgattacagcaacaataacatcaccaatacgagcatattgctgattactagcag 5375 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 5374 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 5315 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5314 gggtc-tgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 5256 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| |||| Sbjct: 5255 gaaagaaatattgtctttccagaaagaagaacc 5223 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 5184 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 5127 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||| ||||| Sbjct: 5126 tagctgctctagctatagttt 5106
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 749 bits (378), Expect = 0.0 Identities = 481/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| | ||| ||||||||||| || |||||||||||| || ||| ||| Sbjct: 78973 taaagcatatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtcta 79030 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct: 79031 ctagtatttataatacttcaggagctaatgaaactattttagtcaaattcaattctctta 79090 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| | Sbjct: 79091 attcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatga 79150 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 |||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 79151 taactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttac 79210 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 79211 gtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 79270 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 79271 cgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcgg 79330 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 79331 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 79390 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 79391 gggtc-tgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggat 79449 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||||||||||||||||||||||| Sbjct: 79450 gaaagaaatattgtctttccagaaagaaaaacc 79482 Score = 119 bits (60), Expect = 1e-23 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand = Plus / Plus Query: 549 ttttagggttctatatctctaatcgaataaattgactttcgtatgggcatttttactggc 608 |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||| Sbjct: 79509 ttttggggttctatatctctaatcgaagaaattgactt-cgtatgggcatttt-actggc 79566 Query: 609 cgctatggagatagctgctctagctacagttt 640 ||||| ||||||||||||||||||||||||| Sbjct: 79567 agctatagagatagctgctctagctacagttt 79598
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 749 bits (378), Expect = 0.0 Identities = 481/513 (93%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| | ||| ||||||||||| || |||||||||||| || ||| ||| Sbjct: 696 taaagcatatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtcta 639 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct: 638 ctagtatttataatacttcaggagctaatgaaactattttagtcaaattcaattctctta 579 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||| | Sbjct: 578 attcttcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatga 519 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 |||| || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct: 518 taactgctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttac 459 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 458 gtgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactg 399 Query: 311 cgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcag 370 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 398 cgtctttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcgg 339 Query: 371 ctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaa 430 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 338 ctcctatgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaa 279 Query: 431 gggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggat 490 ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 278 gggtc-tgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggat 220 Query: 491 gaaagaaatattgtctttccagaaagaaaaacc 523 ||||||||||||||||||||||||||||||||| Sbjct: 219 gaaagaaatattgtctttccagaaagaaaaacc 187 Score = 119 bits (60), Expect = 1e-23 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand = Plus / Minus Query: 549 ttttagggttctatatctctaatcgaataaattgactttcgtatgggcatttttactggc 608 |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||| Sbjct: 160 ttttggggttctatatctctaatcgaagaaattgactt-cgtatgggcatttt-actggc 103 Query: 609 cgctatggagatagctgctctagctacagttt 640 ||||| ||||||||||||||||||||||||| Sbjct: 102 agctatagagatagctgctctagctacagttt 71
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 747 bits (377), Expect = 0.0 Identities = 477/508 (93%), Gaps = 3/508 (0%) Strand = Plus / Plus Query: 16 catatacgtaaaacacaatctactaatattaattctttgatctaaatttcgcctactagt 75 ||||||||| | ||| ||||||||||| || |||||||||||| || ||| |||||||| Sbjct: 78994 catatacgtgagacaaaatctactaatttt--ttctttgatctatatctcgtctactagt 79051 Query: 76 atttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcc 135 ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct: 79052 atttataatacttcaggagctaatgaaactattttagtcaaattcaattctcttaattct 79111 Query: 136 tcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 195 ||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct: 79112 tcggcaaccgcgccaaaaactcgagttccttttggatttcctttttgatcaatgataact 79171 Query: 196 gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgta 255 || ||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| Sbjct: 79172 gctgcattgtcatcatagcgtattattataccgtcgtcgcctttgaattctttacgtgta 79231 Query: 256 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtct 315 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 79232 cgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcgtct 79291 Query: 316 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 375 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 79292 ttgattacagcaataataacatcaccaatacgagcatatcgctgattaccagcggctcct 79351 Query: 376 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 435 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 79352 atgactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc 79411 Query: 436 ttgaggttgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaag 495 ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 79412 -tgaggttgaatcatattatttggatttccatttgttatttcaatgcaaaaggatgaaag 79470 Query: 496 aaatattgtctttccagaaagaaaaacc 523 |||||||||||||||||||||||||||| Sbjct: 79471 aaatattgtctttccagaaagaaaaacc 79498 Score = 119 bits (60), Expect = 1e-23 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand = Plus / Plus Query: 549 ttttagggttctatatctctaatcgaataaattgactttcgtatgggcatttttactggc 608 |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||| Sbjct: 79525 ttttggggttctatatctctaatcgaagaaattgactt-cgtatgggcatttt-actggc 79582 Query: 609 cgctatggagatagctgctctagctacagttt 640 ||||| ||||||||||||||||||||||||| Sbjct: 79583 agctatagagatagctgctctagctacagttt 79614
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 605 bits (305), Expect = e-170 Identities = 357/373 (95%), Gaps = 1/373 (0%) Strand = Plus / Minus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ttataatacttcaggagctaatgaaactattttagtaaaattcaattctctcaattcctc 313 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||| Sbjct: 312 ggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatgataaccgc 253 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 tgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttacatgtacg 193 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 192 tacaattacagctcgaattacttcggatctttctagaggcatttggggcactgcatcttt 133 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 132 gattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagctcctat 73 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | Sbjct: 72 gactcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc-t 14 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 13 gaggttgaatcat 1
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 525 bits (265), Expect = e-146 Identities = 296/305 (97%), Gaps = 1/305 (0%) Strand = Plus / Plus Query: 211 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 270 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 14317 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 14376 Query: 271 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 330 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 14377 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 14436 Query: 331 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 390 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 14437 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 14496 Query: 391 atcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaatcat 450 |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct: 14497 atcaattttcgagctccactgttatctgctacatttaaaagggtc-tgaggttgaatcat 14555 Query: 451 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcc 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 14556 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcc 14615 Query: 511 agaaa 515 ||||| Sbjct: 14616 agaaa 14620 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 13940 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 13997 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 13998 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 14057 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 14058 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 14116 Query: 191 taaccgcagcattgtcatcata 212 ||||||| |||||||| ||||| Sbjct: 14117 taaccgctgcattgtcgtcata 14138 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| | |||||||||||| ||||| |||||||| | Sbjct: 14667 tatatttctaaccgaagaaattgactt-catatgggcattttg-ctggcagctatggaaa 14724 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 14725 tagctgctctagctacagttt 14745
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 525 bits (265), Expect = e-146 Identities = 296/305 (97%), Gaps = 1/305 (0%) Strand = Plus / Plus Query: 211 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 270 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24638131 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24638190 Query: 271 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 330 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24638191 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24638250 Query: 331 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 390 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24638251 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24638310 Query: 391 atcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaatcat 450 |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct: 24638311 atcaattttcgagctccactgttatctgctacatttaaaagggtc-tgaggttgaatcat 24638369 Query: 451 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcc 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 24638370 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcc 24638429 Query: 511 agaaa 515 ||||| Sbjct: 24638430 agaaa 24638434 Score = 448 bits (226), Expect = e-122 Identities = 269/282 (95%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32000439 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32000498 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32000499 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32000558 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32000559 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32000618 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| Sbjct: 32000619 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc-tgag 32000677 Query: 441 gttgaatcatattattttgatttcaatttgttatttcaatgc 482 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 32000678 gttgaatcatattattttgattttaatttgttatttcaatgc 32000719 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 24637754 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 24637811 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24637812 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 24637871 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 24637872 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 24637930 Query: 191 taaccgcagcattgtcatcata 212 ||||||| |||||||| ||||| Sbjct: 24637931 taaccgctgcattgtcgtcata 24637952 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27557409 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27557468 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27557469 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27557527 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27557528 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27557569 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| | |||||||||||| ||||| |||||||| | Sbjct: 24638481 tatatttctaaccgaagaaattgactt-catatgggcattttg-ctggcagctatggaaa 24638538 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 24638539 tagctgctctagctacagttt 24638559
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 525 bits (265), Expect = e-146 Identities = 296/305 (97%), Gaps = 1/305 (0%) Strand = Plus / Plus Query: 211 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 270 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 70177 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 70236 Query: 271 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 330 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 70237 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 70296 Query: 331 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 390 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 70297 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 70356 Query: 391 atcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaatcat 450 |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct: 70357 atcaattttcgagctccactgttatctgctacatttaaaagggtc-tgaggttgaatcat 70415 Query: 451 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcc 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70416 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcc 70475 Query: 511 agaaa 515 ||||| Sbjct: 70476 agaaa 70480 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 69800 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 69857 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 69858 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 69917 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 69918 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 69976 Query: 191 taaccgcagcattgtcatcata 212 ||||||| |||||||| ||||| Sbjct: 69977 taaccgctgcattgtcgtcata 69998 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| | |||||||||||| ||||| |||||||| | Sbjct: 70527 tatatttctaaccgaagaaattgactt-catatgggcattttg-ctggcagctatggaaa 70584 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 70585 tagctgctctagctacagttt 70605
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 525 bits (265), Expect = e-146 Identities = 296/305 (97%), Gaps = 1/305 (0%) Strand = Plus / Plus Query: 211 tagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagct 270 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 24555600 tagcgtattattataccgtcttcgcatttgaactctttacatgtacgtacaattacagct 24555659 Query: 271 cgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaaca 330 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 24555660 cgaattacttcggatctttctagaggcatttggggcactgcgtctttgattacagcaaca 24555719 Query: 331 ataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacac 390 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 24555720 ataacatcaccaatacgagcatatcgctgattactagcagctcttatgactcgaatacac 24555779 Query: 391 atcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaatcat 450 |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||| Sbjct: 24555780 atcaattttcgagctccactgttatctgctacatttaaaagggtc-tgaggttgaatcat 24555838 Query: 451 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtctttcc 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 24555839 attattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtttttcc 24555898 Query: 511 agaaa 515 ||||| Sbjct: 24555899 agaaa 24555903 Score = 448 bits (226), Expect = e-122 Identities = 269/282 (95%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32090951 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 32091010 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 32091011 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 32091070 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32091071 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 32091130 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| Sbjct: 32091131 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc-tgag 32091189 Query: 441 gttgaatcatattattttgatttcaatttgttatttcaatgc 482 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 32091190 gttgaatcatattattttgattttaatttgttatttcaatgc 32091231 Score = 228 bits (115), Expect = 2e-56 Identities = 182/202 (90%), Gaps = 3/202 (1%) Strand = Plus / Plus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 24555223 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 24555280 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 24555281 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 24555340 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||| ||| |||||||||||||| |||||||||||||| || ||||||| |||||| | Sbjct: 24555341 attcctaggcgatcgcgccaaaaacgcgagttccttttggatttccttttt-atcaatga 24555399 Query: 191 taaccgcagcattgtcatcata 212 ||||||| |||||||| ||||| Sbjct: 24555400 taaccgctgcattgtcgtcata 24555421 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 27648732 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 27648791 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 27648792 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 27648850 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 27648851 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 27648892 Score = 73.8 bits (37), Expect = 6e-10 Identities = 72/81 (88%), Gaps = 2/81 (2%) Strand = Plus / Plus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| | |||||||||||| ||||| |||||||| | Sbjct: 24555950 tatatttctaaccgaagaaattgactt-catatgggcattttg-ctggcagctatggaaa 24556007 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 24556008 tagctgctctagctacagttt 24556028
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 448 bits (226), Expect = e-122 Identities = 269/282 (95%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92391 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 92450 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 92451 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 92510 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 92511 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 92570 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| Sbjct: 92571 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc-tgag 92629 Query: 441 gttgaatcatattattttgatttcaatttgttatttcaatgc 482 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 92630 gttgaatcatattattttgattttaatttgttatttcaatgc 92671
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 448 bits (226), Expect = e-122 Identities = 269/282 (95%), Gaps = 1/282 (0%) Strand = Plus / Plus Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 attgtcgttatagcgtattattataccgtcttcgcatttgaattctttacatgtacgtac 1623 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct: 1624 aattatagctcgaattacttcggatctttctagaggcatttaggacactgcgtctttgat 1683 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1684 tacagcaataataacatcaccaatacgagcatatcgctgattactagcagctcctatgac 1743 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| Sbjct: 1744 tcgaatacacatcaattttcgagctccactgttatctgctacatttaaaagggtc-tgag 1802 Query: 441 gttgaatcatattattttgatttcaatttgttatttcaatgc 482 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1803 gttgaatcatattattttgattttaatttgttatttcaatgc 1844
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 391 bits (197), Expect = e-105 Identities = 260/280 (92%), Gaps = 2/280 (0%) Strand = Plus / Minus Query: 11 taaaacatatacgtaaaacacaatctactaatattaattctttgatctaaatttcgccta 70 |||| ||||||||| ||||||||||||||||| || || ||||||||| || | | ||| Sbjct: 79075 taaagcatatacgtgaaacacaatctactaatttt--ttatttgatctatatcttgtcta 79018 Query: 71 ctagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctca 130 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 79017 ctagtatttataatacttcaggagctaatgaaactattttagtaaaattcaattctctca 78958 Query: 131 attcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaatta 190 |||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| | Sbjct: 78957 attcctcggcgatcgcgccaaaaacgcgagttccttttggatttcctttttgatcaatga 78898 Query: 191 taaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttac 250 ||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct: 78897 taaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttac 78838 Query: 251 atgtacgtacaattacagctcgaattacttcggatctttc 290 |||||||||||||||||||||||||||||||||||||||| Sbjct: 78837 atgtacgtacaattacagctcgaattacttcggatctttc 78798
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 389 bits (196), Expect = e-105 Identities = 325/366 (88%), Gaps = 4/366 (1%) Strand = Plus / Minus Query: 85 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 144 |||||||||||||||||||||||||| ||||||||||| | |||||||||| || ||| Sbjct: 362 acttcaggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagcgatc 303 Query: 145 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 204 || ||||||||||||||||||||||| || |||| ||||||||| | ||| ||||||||| Sbjct: 302 gcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgcagcattg 243 Query: 205 tcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaatt 264 |||||||| || ||||| ||||||| ||| | ||||| |||||||||||||||||||||| Sbjct: 242 tcatcatatcgtattatgataccgttttcacgtttgagttctttacatgtacgtacaatt 183 Query: 265 acagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgattaca 324 ||||||| ||||||||| ||||||||||||||||| | ||| | ||| |||||||||||| Sbjct: 182 acagctctaattacttctgatctttctagaggcatattgggaactgcttctttgattaca 123 Query: 325 gcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcga 384 ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||| Sbjct: 122 gcaacaataacatcaccaatatgagcatatcggtgattac---cagctcctatgattcga 66 Query: 385 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttg 444 |||||||| |||||||||||||| || || || |||||||| ||||||||| |||||||| Sbjct: 65 atacacattaattttcgagctccgctgttatccgctacattcaaaagggtc-tgaggttg 7 Query: 445 aatcat 450 |||||| Sbjct: 6 aatcat 1
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 381 bits (192), Expect = e-102 Identities = 327/370 (88%), Gaps = 4/370 (1%) Strand = Plus / Minus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||| || |||||||||||||||||||| ||||||||||| | |||||||||| || Sbjct: 366 taatacctcgggagctaatgaaactattttagtaaaattcaactgtctcaattcccgagc 307 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 |||||| ||||||| |||||||||||||||||| |||| ||||||||| | |||||| || Sbjct: 306 aatcgccccaaaaattcgagttccttttgggtttccttcttgatcaatgacaaccgctgc 247 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||||||||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||| Sbjct: 186 aattacagctctaattacttctgatctttctagaggcatattgggcactgcttctttgat 127 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 ||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggtgattac---cagcccctatgat 70 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 ||||||||||||||||| ||||||||| || || ||||||||||| |||||||| ||||| Sbjct: 69 tcgaatacacatcaattctcgagctccgctgttatctgctacattcaaaagggt-ttgag 11 Query: 441 gttgaatcat 450 |||||||||| Sbjct: 10 gttgaatcat 1
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 192 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 251 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 23399 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 23340 Query: 252 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 23339 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 23280 Query: 312 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 371 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 23279 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 23220 Query: 372 tcctatgactcgaatacacat 392 ||||||||||||||||||||| Sbjct: 23219 tcctatgactcgaatacacat 23199 Score = 174 bits (88), Expect = 2e-40 Identities = 235/280 (83%), Gaps = 3/280 (1%) Strand = Plus / Plus Query: 97 aatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaact 156 ||||||| |||||| || |||||||||||||||||||| |||| ||| ||||||||| Sbjct: 96297 aatgaaattattttaatacaattcaattctctcaattcc-cggcgatcatgccaaaaacg 96355 Query: 157 cgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcgg 216 |||| || ||||| || | ||||||||| || ||||||| | || || ||||||| Sbjct: 96356 tgagtgccctttggatttcttttttgatcgatgataaccgttgtata-tcggcatagcgt 96414 Query: 217 attattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaatt 276 |||||||||| || ||| |||||||| ||||||||||||| || |||||| ||| |||| Sbjct: 96415 attattatactgt-ttcacatttgaactctttacatgtacatataattacttctctaatt 96473 Query: 277 acttcggatctttctagaggcatttggggcaatgcgtctttgattacagcaacaataaca 336 |||| || ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct: 96474 actttgggtctttctagaggcatttggggcactgcatctttcattacagcaacaataaca 96533 Query: 337 tcaccaatacgagcatatcgctgattaccagcagctccta 376 ||| ||||| |||||||| | ||||||| |||||| |||| Sbjct: 96534 tcatcaatatgagcatattgttgattactagcagcaccta 96573 Score = 101 bits (51), Expect = 3e-18 Identities = 61/63 (96%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 419 ctacatttaaaagggtcttgaggttgaatcatattattttgatttcaatttgttatttca 478 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 96608 ctacatttaaaagggt-ttgaggttgaatcatattattttgatgtcaatttgttatttca 96666 Query: 479 atg 481 ||| Sbjct: 96667 atg 96669
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 351 bits (177), Expect = 2e-93 Identities = 195/201 (97%) Strand = Plus / Minus Query: 192 aaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttaca 251 |||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 130171 aaccgctgcattgtcgtcatagcgtattattataccgtcttcgcatttgaactctttaca 130112 Query: 252 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130111 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 130052 Query: 312 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagc 371 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 130051 gtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattactagcagc 129992 Query: 372 tcctatgactcgaatacacat 392 ||||||||||||||||||||| Sbjct: 129991 tcctatgactcgaatacacat 129971
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 335 bits (169), Expect = 1e-88 Identities = 337/391 (86%), Gaps = 4/391 (1%) Strand = Plus / Plus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 127 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| || | || Sbjct: 81909 ctactagtatttataagacttcaggggctaatgagactattttagtgaaatttaactttc 81968 Query: 128 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 187 |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 81969 tcaattcccgagcaatcgctccaaaaactcgagttccttttggatttccttcttgatcaa 82028 Query: 188 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 247 | | ||| || |||||||||||||| || ||||| ||||||| |||| ||||| ||||| Sbjct: 82029 tgacaactgccgcattgtcatcatatcgtattatcataccgttgtcgcgtttgagttctt 82088 Query: 248 tacatgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggca 307 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct: 82089 tacatgtacgtacaattacagctcgaataacttctgatctttcgagaggcatattgggca 82148 Query: 308 atgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccag 367 ||| ||||||||||||||||||||||| ||||| ||| |||||||||| |||||| Sbjct: 82149 ctgcttctttgattacagcaacaataacgtcaccgatatgagcatatcggcgattac--- 82205 Query: 368 cagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacattta 427 ||| ||||||| |||||| |||||||||| |||||| || || ||||| |||||||| | Sbjct: 82206 tagcccctatgattcgaatgcacatcaattctcgagccccgctgttgtccgctacattca 82265 Query: 428 aaagggtcttgaggttgaatcatattatttt 458 || ||||| |||||||||||||||| ||||| Sbjct: 82266 aatgggtc-tgaggttgaatcatatcatttt 82295
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 309 bits (156), Expect = 6e-81 Identities = 344/402 (85%), Gaps = 6/402 (1%) Strand = Plus / Plus Query: 79 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 138 ||||| ||||| || ||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct: 82583 tataagacttcgggtgctaatgaaacgattttagtaaaattcaactgtcgcaattc-tcg 82641 Query: 139 -gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||||| || ||||||| ||||||||||||||| || |||| ||||||||| |||||||| Sbjct: 82642 agcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataaccgc 82701 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||||||||||| || ||||| || |||| || | ||||| |||||||||||| || Sbjct: 82702 tgcattgtcatcatatcgtattatcatgccgttgtcacgtttgagttctttacatgtgcg 82761 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||| ||||||| ||||| ||| ||||||||||||||||| | ||||| ||| ||||| Sbjct: 82762 tacaatcacagctctaattatttctgatctttctagaggcatgttgggcactgcttcttt 82821 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||||||||||||||||||||| |||| | |||||||||| ||||||| ||| |||||| Sbjct: 82822 gattacagcaacaataacatcgccaagatgagcatatcggtgattac---cagttcctat 82878 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 || |||||||||||| |||||| |||||||||| || || |||||||| ||||||||| | Sbjct: 82879 gattcgaatacacattaatttttgagctccactgttatccgctacattcaaaagggtc-t 82937 Query: 438 gaggttgaatcatattattttgatttcaatttgttatttcaa 479 ||||||||||||||| ||||| | || ||| | ||||||||| Sbjct: 82938 gaggttgaatcatatcatttttaatttaatctcttatttcaa 82979
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 305 bits (154), Expect = 1e-79 Identities = 328/384 (85%), Gaps = 4/384 (1%) Strand = Plus / Plus Query: 75 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 134 |||||||||||| |||||||||| ||||||||||| || |||||||| | ||||||||| Sbjct: 80435 tatttataatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattc 80494 Query: 135 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 194 | || ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| Sbjct: 80495 ccgagcgatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaac 80554 Query: 195 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 254 || |||||||||||||| || ||||| ||||||| || | ||||| |||||||||||| Sbjct: 80555 tgctgcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgt 80614 Query: 255 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 314 ||||||||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| || Sbjct: 80615 acgtacaattacagctctgaccacttctgatctttctagagacatattgggtactgcttc 80674 Query: 315 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 374 ||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||| Sbjct: 80675 tttgattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcc 80731 Query: 375 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 434 ||||| ||||||||||||||||| |||||| || || || || ||||||||||||||||| Sbjct: 80732 tatgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggt 80791 Query: 435 cttgaggttgaatcatattatttt 458 | |||||||||||||||| ||||| Sbjct: 80792 c-tgaggttgaatcatatcatttt 80814
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 293 bits (148), Expect = 4e-76 Identities = 319/374 (85%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82356 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82415 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82416 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82475 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82476 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82535 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82536 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82595 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82596 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82652 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82653 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc- 82711 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 82712 tgaggttgaatcat 82725
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 291 bits (147), Expect = 1e-75 Identities = 184/195 (94%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 329 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 388 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24916826 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 24916767 Query: 389 acatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaatc 448 |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| Sbjct: 24916766 acattaattttcgagctccactattatctgctacatttaaaagggtc-tgaggttaaatt 24916708 Query: 449 atattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtcttt 508 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 24916707 atattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtcttt 24916648 Query: 509 ccagaaagaaaaacc 523 |||||||||| |||| Sbjct: 24916647 ccagaaagaagaacc 24916633 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 24916596 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 24916539 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 24916538 tagctgctctagctacagttt 24916518 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 132 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 191 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 20875041 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 20875100 Query: 192 aaccgcagcattgtcatc 209 ||||| ||||||||||| Sbjct: 20875101 aaccgttgcattgtcatc 20875118 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 113 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 155 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 32000475 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 32000433
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 291 bits (147), Expect = 1e-75 Identities = 184/195 (94%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 329 caataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatac 388 |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct: 78109 caattacatcaccaatacgagcatatcgctgattactagcagctcctatgacttgaatac 78050 Query: 389 acatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaatc 448 |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| Sbjct: 78049 acattaattttcgagctccactattatctgctacatttaaaagggtc-tgaggttaaatt 77991 Query: 449 atattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatattgtcttt 508 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 77990 atattattttgatttcaatttgctatttcaatgcaaaaagatgaaagaaatattgtcttt 77931 Query: 509 ccagaaagaaaaacc 523 |||||||||| |||| Sbjct: 77930 ccagaaagaagaacc 77916 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 77879 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 77822 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 77821 tagctgctctagctacagttt 77801
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 285 bits (144), Expect = 9e-74 Identities = 315/370 (85%), Gaps = 4/370 (1%) Strand = Plus / Minus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||| |||||||||| ||||||||||| || |||||||| | |||||||||| || Sbjct: 366 taatacctcaggagctagggaaactattttagtgaaattcaaatgtctcaattcccgagc 307 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || || Sbjct: 306 gatcgcaccaaaaactcgagttccttttggattcccttcttgatcaatgacaactgctgc 247 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||||||||| || ||||| ||||||| || | ||||| |||||||||||||||||| Sbjct: 246 attgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtac 187 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||||||||| | ||||| ||||||||||||| ||| | ||| | ||| |||||||| Sbjct: 186 aattacagctctgaccacttctgatctttctagagacatattgggtactgcttctttgat 127 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 ||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| Sbjct: 126 tacagcaacaataacgtcaccaatatgagcatatcggcgattac---tggctcctatgat 70 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 ||||||||||||||||| |||||| || || || || |||||||||||||||||| |||| Sbjct: 69 tcgaatacacatcaattctcgagccccgctgttatccgctacatttaaaagggtc-tgag 11 Query: 441 gttgaatcat 450 |||||||||| Sbjct: 10 gttgaatcat 1
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 285 bits (144), Expect = 9e-74 Identities = 324/382 (84%), Gaps = 4/382 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| || | ||||||||| Sbjct: 80082 tttataatacctcgggagctaatgaaactattttagtaaaattgaactgtctcaattctc 80141 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||||||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| | Sbjct: 80142 gggcaatcgcaccaaaaacgcgagttccttttggatttccttcttgatcaatcacaactg 80201 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| ||||||| || | ||| | ||||||||| |||| Sbjct: 80202 cagcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtac 80261 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||| Sbjct: 80262 ggacaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctt 80321 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 80322 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 80378 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || || || ||||||||||| ||| ||||| Sbjct: 80379 tgattcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtc- 80437 Query: 437 tgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 80438 tgaggttgaatcatatcatttt 80459
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 285 bits (144), Expect = 9e-74 Identities = 318/374 (85%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82305 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82364 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82365 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82424 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82425 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82484 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82485 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82544 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82545 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82601 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82602 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc- 82660 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 82661 tgaggttgaatcat 82674
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 285 bits (144), Expect = 9e-74 Identities = 318/374 (85%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82317 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82376 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||| ||||| || |||| ||||||||| | ||| | Sbjct: 82377 gggcgattgcaccaaaaattcgagttccctttggatttccttcttgatcaataacaactg 82436 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| |||||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82437 cagcattgtcatcatatcggattatcatcccgttgtcacgtttgagttctttacaggtac 82496 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82497 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82556 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82557 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82613 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82614 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc- 82672 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 82673 tgaggttgaatcat 82686
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 280 bits (141), Expect = 5e-72 Identities = 324/383 (84%), Gaps = 4/383 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 82960 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83019 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83020 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83079 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83080 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83139 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83140 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83199 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83200 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83256 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83257 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggt-t 83315 Query: 437 tgaggttgaatcatattattttg 459 ||||||||||||||||||||||| Sbjct: 83316 tgaggttgaatcatattattttg 83338
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 280 bits (141), Expect = 5e-72 Identities = 324/383 (84%), Gaps = 4/383 (1%) Strand = Plus / Minus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 436 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 377 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 376 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 317 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 316 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 257 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 256 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 197 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 196 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 140 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 139 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggt-t 81 Query: 437 tgaggttgaatcatattattttg 459 ||||||||||||||||||||||| Sbjct: 80 tgaggttgaatcatattattttg 58
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 280 bits (141), Expect = 5e-72 Identities = 324/383 (84%), Gaps = 4/383 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||||||||| |||||||||| |||||| || ||||| || | ||||||||| Sbjct: 83188 tttataatacttcaggtgctaatgaaattatttttgtgaaatttaactgtctcaattctc 83247 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||||||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||||| Sbjct: 83248 gggcaatcgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaaccg 83307 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| ||||| | ||| | ||||| ||||||||| |||| Sbjct: 83308 cagcattgtcatcatatcgtattatcataccattttctcgtttgagttctttacaagtac 83367 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 ||||||||||||||| || ||||| |||||||||| ||| | | || | || | | Sbjct: 83368 gtacaattacagctctgatcacttctgatctttctaaaggtgtatttgggacggctttct 83427 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 ||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 83428 tgattacagcaacaataacgtcaccaatatgagcatatcgtcgattac---tagccccta 83484 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| ||| ||||| || || ||||||||||| |||||||| | Sbjct: 83485 tgattcgaatacacatcaattctcgggctccgctgttatctgctacattcaaaagggt-t 83543 Query: 437 tgaggttgaatcatattattttg 459 ||||||||||||||||||||||| Sbjct: 83544 tgaggttgaatcatattattttg 83566
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 278 bits (140), Expect = 2e-71 Identities = 314/370 (84%), Gaps = 4/370 (1%) Strand = Plus / Minus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 ||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| || Sbjct: 366 taatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattcacgagc 307 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 ||||| |||||||||||||| |||||||| || |||| ||||||||| | ||| || || Sbjct: 306 aatcgaaccaaaaactcgagtgccttttggatttccttcttgatcaatgacaactgctgc 247 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtac 260 |||||||||||| || ||||| ||||||| |||| ||||| |||||||||||||||||| Sbjct: 246 attgtcatcataccgtattatcataccgttgtcgcgtttgagttctttacatgtacgtac 187 Query: 261 aattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgat 320 ||||||||||| |||||||| |||||||| || ||||| | |||| ||| |||||||| Sbjct: 186 aattacagctctgattacttctgatctttccaggggcatatttggcactgcttctttgat 127 Query: 321 tacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgac 380 ||||||||||||||| ||||| ||| |||||||||| | ||||| ||||||||||| Sbjct: 126 tacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcctatgat 70 Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 |||||||||||||| |||||||||||| || ||||| |||||||| ||| ||||| |||| Sbjct: 69 tcgaatacacatcagttttcgagctccgctgttgtccgctacattcaaatgggtc-tgag 11 Query: 441 gttgaatcat 450 |||||||||| Sbjct: 10 gttgaatcat 1
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 278 bits (140), Expect = 2e-71 Identities = 323/382 (84%), Gaps = 4/382 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| || | |||||||||| Sbjct: 82667 tttataatacctccggagctaatgaaactattttagtaaaatttaactgtctcaattccc 82726 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 |||||| || |||||||| |||||||| |||||||| |||| |||||| || | ||||| Sbjct: 82727 gggcaattgcaccaaaaacccgagttccctttgggtttccttcttgatcgatgacaaccg 82786 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| |||| Sbjct: 82787 cagcattgtcatcatatcgtattatcataccgttatcacgtttgagttctttacaagtac 82846 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 ||||||||||||||| | ||||| |||||| |||| ||||| | |||| ||| |||| Sbjct: 82847 gtacaattacagctctgaccacttctgatcttgctaggggcatgtttggcactgcttctt 82906 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||| ||| |||||||||| |||| | |||||||| Sbjct: 82907 tgatcacagcaacaataacgtcaccgatatgagcatatcgacgattgc---tagctccta 82963 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || || || || |||||||| ||||||||| Sbjct: 82964 tgattcgaatacacatcaattctcgagccccgctgttatccgctacattcaaaagggtc- 83022 Query: 437 tgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 83023 tgaggttgaatcatatcatttt 83044
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 278 bits (140), Expect = 2e-71 Identities = 317/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82452 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82511 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82512 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82571 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82572 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82631 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82632 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82691 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82692 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82748 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82749 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc- 82807 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 82808 tgaggttgaatcat 82821
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 278 bits (140), Expect = 2e-71 Identities = 317/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82449 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82508 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 82509 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 82568 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 ||||||||||||| || || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 82569 cagcattgtcatcgtatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 82628 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | ||| |||| Sbjct: 82629 gcacaattacagctctgactacttctgatctttctaggggcatatttggtactgcttctt 82688 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 82689 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 82745 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || ||||| || |||||||||||| ||||| Sbjct: 82746 tgattcgaatacacatcaattctcgagccccgctattatccgctacatttaaatgggtc- 82804 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 82805 tgaggttgaatcat 82818
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 276 bits (139), Expect = 9e-71 Identities = 322/381 (84%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||| ||||| ||||||||||| |||||||| || | |||||||||| Sbjct: 85542 ttataatacctcaggggctaaggaaactattttagtaaaatttaactgtctcaattcccg 85601 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 | | ||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||| || Sbjct: 85602 gacgatcgcaccaaaaattcgagttccttttgggtttccttcttgatcaataataactgc 85661 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 ||||||||||||||| || ||||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 85662 agcattgtcatcatatcgtattatcataccgttgtcacgtttgagttctttacaggtacg 85721 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||||||||||| |||||||| ||||||||||||||||| | || | | | ||||| Sbjct: 85722 tacaattacagctctgattacttctgatctttctagaggcatatttggtactacttcttt 85781 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||| |||||||||||||| ||||||||| |||| ||||| |||||| || |||||| Sbjct: 85782 gatcacagcaacaataacgtcaccaatatgagcgtatcggcgattac---tagttcctat 85838 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 || ||||||||||||||||| ||| || || || ||||| |||||||| ||| ||||| | Sbjct: 85839 gattcgaatacacatcaattctcgggccccgctgttgtccgctacattcaaatgggtc-t 85897 Query: 438 gaggttgaatcatattatttt 458 | ||||||||||||| ||||| Sbjct: 85898 ggggttgaatcatatcatttt 85918
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 274 bits (138), Expect = 3e-70 Identities = 321/380 (84%), Gaps = 4/380 (1%) Strand = Plus / Plus Query: 79 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 138 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80638 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80697 Query: 139 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 198 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80698 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80757 Query: 199 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 258 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80758 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80817 Query: 259 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 318 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80818 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80877 Query: 319 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 378 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80878 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80934 Query: 379 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttg 438 | ||||||||||||||||| |||||| || || || ||||||||||| ||| ||||| || Sbjct: 80935 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtc-tg 80993 Query: 439 aggttgaatcatattatttt 458 |||||||||||||| ||||| Sbjct: 80994 aggttgaatcatatcatttt 81013
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 274 bits (138), Expect = 3e-70 Identities = 318/376 (84%), Gaps = 4/376 (1%) Strand = Plus / Plus Query: 75 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 134 ||||||||||||||| ||||||||||| ||||| || || ||||| || | ||||||||| Sbjct: 86608 tatttataatacttcgggagctaatgagactatcttagtgaaatttaactgtctcaattc 86667 Query: 135 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 194 ||||||| ||||||||||| || |||||||| || |||| ||||||||| | ||| Sbjct: 86668 acgagcaatcgaaccaaaaactcgggtgccttttggatttccttcttgatcaatgacaac 86727 Query: 195 cgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 254 || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||||| Sbjct: 86728 tgctgcattgtcatcataccggattatcataccgttgtcgcgcttgagttctttacatgt 86787 Query: 255 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 314 ||||||||||||||||| |||||||| |||||||| || ||||| | |||| ||| || Sbjct: 86788 acgtacaattacagctctgattacttctgatctttccaggggcatatttggcactgcttc 86847 Query: 315 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 374 ||||||||||||||||||||| ||||| ||| |||||||||| | ||||| |||||| Sbjct: 86848 tttgattacagcaacaataacgtcaccgatatgagcatatcggtaattac---tagctcc 86904 Query: 375 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 434 ||||| |||||||||||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct: 86905 tatgattcgaatacacataagttttcgggctccgctgttgtccgctacattcaaaagggt 86964 Query: 435 cttgaggttgaatcat 450 | |||||||||||||| Sbjct: 86965 c-tgaggttgaatcat 86979
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 274 bits (138), Expect = 3e-70 Identities = 321/380 (84%), Gaps = 4/380 (1%) Strand = Plus / Plus Query: 79 tataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg 138 |||||||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct: 80636 tataatacctcaggggctaatgaaactattttagtaaaattgaactgtctcaattctcgg 80695 Query: 139 gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgca 198 |||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 80696 gcaatcgcaccaaaaactcgcgttccttttggatttccttcttgatcaatcacaactgcg 80755 Query: 199 gcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgt 258 |||||||||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 80756 gcattgtcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacgg 80815 Query: 259 acaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttg 318 ||||||||||||| | ||||| ||||||||||||||||| | || | |||||||||| Sbjct: 80816 acaattacagctctgaccacttctgatctttctagaggcatgtttggaactgcgtctttg 80875 Query: 319 attacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatg 378 || |||||||||||||| ||||||||| |||||||||| |||| | |||||||||| Sbjct: 80876 atcacagcaacaataacgtcaccaatatgagcatatcggcgattgc---tagctcctatg 80932 Query: 379 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttg 438 | ||||||||||||||||| |||||| || || || ||||||||||| ||| ||||| || Sbjct: 80933 attcgaatacacatcaattctcgagccccgctgttatctgctacattcaaatgggtc-tg 80991 Query: 439 aggttgaatcatattatttt 458 |||||||||||||| ||||| Sbjct: 80992 aggttgaatcatatcatttt 81011
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 270 bits (136), Expect = 5e-69 Identities = 316/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 82940 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 82999 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83000 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83059 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || |||||||| |||| || | ||||| ||||||||| || | Sbjct: 83060 cagcattgtcatcatatcgtattattatcccgttgtcacgtttgagttctttacaggtcc 83119 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83120 gcacaattacagctctgactacttctgatctttctaggggcatatttggtatggcttctt 83179 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83180 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83236 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || || || || |||||||||||| ||||| Sbjct: 83237 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtc- 83295 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 83296 tgaggttgaatcat 83309
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 262 bits (132), Expect = 1e-66 Identities = 315/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83177 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83236 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83237 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83296 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83297 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83356 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83357 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83416 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83417 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83473 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || || || || |||||||||||| ||||| Sbjct: 83474 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtc- 83532 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 83533 tgaggttgaatcat 83546
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 262 bits (132), Expect = 1e-66 Identities = 317/376 (84%), Gaps = 7/376 (1%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 79239 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 79295 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| || Sbjct: 79296 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataactgc 79355 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 ||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| ||||| Sbjct: 79356 agcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagtacg 79415 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 ||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| ||||| Sbjct: 79416 tacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttcttt 79475 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||| |||||||||||||| |||||||||||||||||||| | || | ||||||||| Sbjct: 79476 gatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcctat 79532 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 || ||||||||||||||||| |||||| || || |||||||||||||| ||| ||||| | Sbjct: 79533 gattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggtc-t 79591 Query: 438 gaggttgaatcatatt 453 |||||||||||||||| Sbjct: 79592 gaggttgaatcatatt 79607
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 262 bits (132), Expect = 1e-66 Identities = 315/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83420 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83479 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83480 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83539 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| |||| Sbjct: 83540 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtac 83599 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | || ||| ||||||||||| ||||| | || | ||| |||| Sbjct: 83600 gcacaattacagctctgactatttctgatctttctaggggcatatttggtactgcttctt 83659 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83660 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83716 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| |||||||||||| |||| |||||| || || || || |||||||||||| ||||| Sbjct: 83717 tgattcgaatacacattaattctcgagccccgctgttatccgctacatttaaatgggtc- 83775 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 83776 tgaggttgaatcat 83789
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 262 bits (132), Expect = 1e-66 Identities = 315/374 (84%), Gaps = 4/374 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 83175 tttataatacctcgggagctaatgaaactattttagtaaaatttaattctctcaattccc 83234 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || || ||||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 83235 gggcgattgcaccaaaaattcgagttccttttggatttccttcttgatcaataacaactg 83294 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 |||||||||||||||| || ||||| || |||| || | ||||| ||||||||| || | Sbjct: 83295 cagcattgtcatcatatcgtattatcatcccgttgtcacgtttgagttctttacaggtcc 83354 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 | ||||||||||||| | |||||| ||||||||||| ||||| | || | || |||| Sbjct: 83355 gcacaattacagctctgactacttctgatctttctaggggcatatttggtacggcttctt 83414 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 |||| |||||||||||||| ||||||||| |||||||||| |||| | |||||||| Sbjct: 83415 tgatcacagcaacaataacgtcaccaatatgagcatatcgacgattgc---tagctccta 83471 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| ||||||||||||||||| |||||| || || || || |||||||||||| ||||| Sbjct: 83472 tgattcgaatacacatcaattctcgagccccgctgttatccgctacatttaaatgggtc- 83530 Query: 437 tgaggttgaatcat 450 |||||||||||||| Sbjct: 83531 tgaggttgaatcat 83544
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 260 bits (131), Expect = 5e-66 Identities = 314/373 (84%), Gaps = 4/373 (1%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| || |||||||||||||||||||| || ||||| || | |||||||||| Sbjct: 85087 ttataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccg 85146 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||| ||||| ||||||| ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85147 ggcgatcgcaccaaaaattcgagttccttttggatttccttcttgatcaatgacaacggc 85206 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 ||||||||||||||| || ||||| || |||| |||| ||||| |||||||| ||||| Sbjct: 85207 agcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacgagtacg 85266 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||||||||||| || ||||| |||||||||||||| | | || | ||| || || Sbjct: 85267 tacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttcctt 85326 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 85327 gatcacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 85383 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 |||||||||||||||||||| ||| || || || || ||||||||||| ||| ||||| | Sbjct: 85384 gactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtc-t 85442 Query: 438 gaggttgaatcat 450 ||||||||||||| Sbjct: 85443 gaggttgaatcat 85455
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 244 bits (123), Expect = 3e-61 Identities = 318/381 (83%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 80696 ttataatacctcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 80755 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 | ||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 80756 tgggatcgccccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgc 80815 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||||||||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 80816 ggcattgtcatcatatcgtattatcgtcccattgttacgtttgagttctttacaagtacg 80875 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||||||||||| ||| ||||| |||||||||||||| | | || | ||| ||||| Sbjct: 80876 tacaattacagctctaatcacttctgatctttctagaggagtatttggtattgcttcttt 80935 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 |||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| Sbjct: 80936 gattacagcaacaataacgtcaccaatatgagcatatcggcgattac---tagctcctat 80992 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 | ||||||||||||||||| || ||| || || |||||||||||||| ||| ||| || Sbjct: 80993 tattcgaatacacatcaattctctagccccgctgttgtctgctacattcaaataggt-tt 81051 Query: 438 gaggttgaatcatattatttt 458 | ||||||||||||| ||||| Sbjct: 81052 gtggttgaatcatatcatttt 81072
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 177 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 236 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 4998 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 4939 Query: 237 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 296 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 4938 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 4879 Query: 297 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 346 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 4878 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 4829
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 242 bits (122), Expect = 1e-60 Identities = 158/170 (92%) Strand = Plus / Minus Query: 177 tttttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgca 236 |||||||||||| |||||| | ||||||| |||||||| ||||||||||| |||||||| Sbjct: 88345 tttttgatcaatgataacctctgcattgttgtcatagcgtattattataccatcttcgca 88286 Query: 237 tttgaattctttacatgtacgtacaattacagctcgaattacttcggatctttctagagg 296 |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||| Sbjct: 88285 tttgaactctttacatgtatgtacaattacacctcaaattacttcggatctttctagagg 88226 Query: 297 catttggggcaatgcgtctttgattacagcaacaataacatcaccaatac 346 ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88225 catttggggcactgcgtctttgattacagcaacaataacatcaccaatac 88176
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 240 bits (121), Expect = 5e-60 Identities = 317/379 (83%), Gaps = 10/379 (2%) Strand = Plus / Minus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||||||||||||||||||||| | ||| || || || ||||||| Sbjct: 3697 ttataatacctcaggagctaatgaaactattttcgcaaattt---ttgtcgcaattcccg 3641 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc-- 195 |||||| || ||||||| ||||||||||||||| || |||| ||||||||| ||||| Sbjct: 3640 ggcaattgcaccaaaaattcgagttccttttggatttccttcttgatcaatgataacaac 3581 Query: 196 -gcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgt 254 ||||||||||||||||| || ||||| ||||||| |||| ||| | ||||||||| || Sbjct: 3580 tgcagcattgtcatcatatcgtattatcataccgttgtcgcgttttagttctttacaagt 3521 Query: 255 acgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtc 314 |||||||| |||||||| || ||||| |||||||||| ||| | | ||| | ||| || Sbjct: 3520 acgtacaactacagctctgatcacttctgatctttctaagggcgtgttggggattgcttc 3461 Query: 315 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 374 |||||| |||||||||||||| |||||||||||||||||||| | || | |||||| Sbjct: 3460 tttgatcacagcaacaataacgtcaccaatacgagcatatcgacggttgc---tagctcc 3404 Query: 375 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 434 ||||| ||||||||||||||||| |||||| || || |||||||||||||| ||| |||| Sbjct: 3403 tatgattcgaatacacatcaattctcgagccccgctgttgtctgctacattcaaatgggt 3344 Query: 435 cttgaggttgaatcatatt 453 | ||||||||||||||||| Sbjct: 3343 c-tgaggttgaatcatatt 3326
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 228 bits (115), Expect = 2e-56 Identities = 307/369 (83%), Gaps = 4/369 (1%) Strand = Plus / Plus Query: 82 aatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggca 141 ||||| || ||||||||||| ||||| || || |||||||| | |||||||||| | || Sbjct: 87322 aatacctcgggagctaatgatactatcttagtgaaattcaaatgtctcaattccccagcg 87381 Query: 142 atcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagca 201 |||| ||||| ||||||||||||||||| || || | | ||||||| | ||| || ||| Sbjct: 87382 atcgaaccaaagactcgagttccttttggatttccctctggatcaataacaactgctgca 87441 Query: 202 ttgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtaca 261 ||||||||||| || ||||||||||||| || | ||||| ||||||||||||||||||| Sbjct: 87442 ttgtcatcatatcgtattattataccgttgtcacgtttgagttctttacatgtacgtaca 87501 Query: 262 attacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttgatt 321 |||||||||| || ||||| |||||||| || ||||| | ||| | ||| ||||||||| Sbjct: 87502 attacagctctgatcacttctgatctttccaggggcatattgggtactgcttctttgatt 87561 Query: 322 acagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgact 381 |||||||||||||| ||||||||| |||||||||| | |||| |||||||| || | Sbjct: 87562 acagcaacaataacgtcaccaatatgagcatatcgggggttac---tagctcctacgatt 87618 Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgagg 441 |||||||||||||||| |||||| || || ||||| |||||||| ||| ||| ||||| Sbjct: 87619 cgaatacacatcaattctcgagccccgctgttgtccgctacattcaaataggt-ttgagc 87677 Query: 442 ttgaatcat 450 ||||||||| Sbjct: 87678 ttgaatcat 87686
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 228 bits (115), Expect = 2e-56 Identities = 316/381 (82%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 85802 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 85861 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||||||||| ||||||||||| ||||||||||| || |||| ||||||||| | ||| || Sbjct: 85862 ggcaatcgcaccaaaaactcgggttccttttggatttccttcttgatcaatgacaacagc 85921 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 ||||||||||||||| || ||||| |||||||| || ||||| | ||||||||| ||||| Sbjct: 85922 agcattgtcatcatatcgtattatgataccgtcgtcacatttaagttctttacaagtacg 85981 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||||||||||| | ||||| ||||||||||| | | || ||||| || || Sbjct: 85982 tacaattacagctctgaccacttctgatctttctagggaggtgcttggtaatgcttcctt 86041 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||| ||||||||||||| ||||| ||| |||||||||| |||||| |||||| || Sbjct: 86042 gatcacagcaacaataatgtcaccgatatgagcatatcgacgattac---tagctccgat 86098 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 || |||||||||||| |||| |||||| ||||| || || || ||||| ||| |||| || Sbjct: 86099 gattcgaatacacattaattctcgagccccactgttatccgcgacattcaaacgggt-tt 86157 Query: 438 gaggttgaatcatattatttt 458 ||||||||||||||| ||||| Sbjct: 86158 gaggttgaatcatatcatttt 86178
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 224 bits (113), Expect = 3e-55 Identities = 310/371 (83%), Gaps = 6/371 (1%) Strand = Plus / Minus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 139 |||||||||||| ||||||||||||||||| ||||||||||| | |||||| || ||| | Sbjct: 366 taatacttcaggggctaatgaaactattttagtaaaattcaactgtctcaactc-tcgag 308 Query: 140 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 199 | || || ||||||||||||||||||||||| || |||| ||||||||| | ||| || | Sbjct: 307 cgattgcaccaaaaactcgagttccttttggatttccttcttgatcaatgacaactgctg 248 Query: 200 cattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgta 259 ||||||||||||| | ||||| ||||| | || | ||||| ||||||||| || |||| Sbjct: 247 cattgtcatcatattgtattatcataccattgtcacgtttgagttctttacacgtgcgta 188 Query: 260 caattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctttga 319 |||||||||||| || ||||| ||||||| ||||||||| | ||| | ||| ||||||| Sbjct: 187 caattacagctctgatcacttctgatctttgtagaggcatattgggaactgcttctttga 128 Query: 320 ttacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatga 379 |||| ||||||||||| || |||||| ||||||| || |||||| ||||||||||| Sbjct: 127 ttaccgcaacaataacgtcgccaatatgagcataacgtcgattac---tagctcctatga 71 Query: 380 ctcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttga 439 || ||||||||| ||||||| ||| || || ||||| |||||||||||| |||| ||| Sbjct: 70 ttctaatacacattaattttctagccccgctgttgtccgctacatttaaataggtc-tga 12 Query: 440 ggttgaatcat 450 ||||||||||| Sbjct: 11 ggttgaatcat 1
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 212 bits (107), Expect = 1e-51 Identities = 314/381 (82%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||| ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 85487 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 85546 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||||||||| ||||||||||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 85547 ggcaatcgcaccaaaaactcgagttccttttggatttccttcttgatcaatcacaactgc 85606 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||| |||||||| || ||||| ||||||| || | ||| | ||||||||| ||||| Sbjct: 85607 agcattatcatcatatcgtattatcataccgttgtcacgtttaagttctttacaagtacg 85666 Query: 258 tacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtcttt 317 |||||||||||||| || || || |||||||||||||| | | || ||||| || || Sbjct: 85667 tacaattacagctctgatcacctctgatctttctagaggtgtgtttggtaatgcttcctt 85726 Query: 318 gattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctat 377 ||| ||||||||||||| ||||| ||| |||||||||| |||||| ||||||||| Sbjct: 85727 gatcacagcaacaataatgtcaccgatatgagcatatcggcgattac---tagctcctat 85783 Query: 378 gactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctt 437 || || ||||||||| |||| ||| || || || || || |||||||| ||| || | || Sbjct: 85784 gattctaatacacattaattctcgggccccgctgttatccgctacattcaaatggct-tt 85842 Query: 438 gaggttgaatcatattatttt 458 ||||||||||||||| ||||| Sbjct: 85843 gaggttgaatcatatcatttt 85863
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 210 bits (106), Expect = 4e-51 Identities = 313/378 (82%), Gaps = 8/378 (2%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 79787 ttataatacttcaggagctaatgaaactattttagtaaagtttaattgtctcaattcccg 79846 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 | ||||| |||||||| |||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79847 tgggatcgccccaaaaacgcgagttccttttggatttccttcttgatcaatgacaactgc 79906 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||||| ||||| || ||||| | || | | | ||||| ||||||||| ||||| Sbjct: 79907 ggcattgtcgtcatatcgtattatcgtcccattcttacgtttgagttctttacaagtacg 79966 Query: 258 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 315 |||||||||||||| | ||||| ||||||||||||| | ||||||| | ||| || Sbjct: 79967 tacaattacagctctgaccacttctgatctttctagagtagtatttggg--attgcttcc 80024 Query: 316 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 375 |||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||| Sbjct: 80025 ttgattacagcaacaataacgtcaccaatatgagcatagcggcgattac---tagctcct 80081 Query: 376 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 435 || | |||||||||||||||||||| ||| || || |||||||||||||| ||| ||| Sbjct: 80082 attattcgaatacacatcaattttctagccccgctgttgtctgctacattcaaataggt- 80140 Query: 436 ttgaggttgaatcatatt 453 ||| |||||||||||||| Sbjct: 80141 ttgtggttgaatcatatt 80158
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 210 bits (106), Expect = 4e-51 Identities = 277/334 (82%), Gaps = 15/334 (4%) Strand = Plus / Minus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctc 127 |||||||||||| |||||| ||||||||| |||| ||| |||| || ||||||| || Sbjct: 99133 ctactagtatttttaatacctcaggagctcatgagactcttttagtgaaattcataagtc 99074 Query: 128 tcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaa 187 |||||||| || ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct: 99073 tcaattcccgagcgatcgcaccaaaaactcgagttccttttggatttccttcttgatcaa 99014 Query: 188 ttataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctt 247 | | ||||| |||||||| || ||||| ||||||| || | ||||| ||||| Sbjct: 99013 tgacaaccg--------tcatcatatcgtattatcataccgttgtcacgtttgagttctt 98962 Query: 248 tacatgtacgtacaattacagctcgaattacttcgg----atctttctagaggcatttgg 303 ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | Sbjct: 98961 tacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcattttg 98902 Query: 304 ggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatcgctgatta 363 |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||| Sbjct: 98901 ggcactgcttctttgattacagcaacaataacgtcaccaatatgagcatatcagtgatta 98842 Query: 364 ccagcagctcctatgactcgaatacacatcaatt 397 | ||||||||| || ||||||||| ||||||| Sbjct: 98841 c---cagctcctaagattcgaatacatatcaatt 98811
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 206 bits (104), Expect = 7e-50 Identities = 314/382 (82%), Gaps = 4/382 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 78574 tttataatatctcaggcgctaatgaaactattttagtgaaattgaactgtctcaattccc 78633 Query: 137 cggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccg 196 ||| || |||| ||||| ||||||||||||||| || |||| ||||||||| | ||| | Sbjct: 78634 gggcgattgcgcaaaaaattcgagttccttttggatttccttcttgatcaatgacaactg 78693 Query: 197 cagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtac 256 ||||||| |||||||| | ||||||||||| | | ||||| ||||||||| |||| Sbjct: 78694 cagcattatcatcatactgtattattataccattgctacgtttgagttctttacaagtac 78753 Query: 257 gtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgcgtctt 316 ||||||||||||||| || ||||| |||||||||| || | | || | ||| |||| Sbjct: 78754 gtacaattacagctctgatcacttctgatctttctaagggtgtattcggtactgcttctt 78813 Query: 317 tgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctccta 376 ||||||||||||||| || ||||||||| ||| ||||| |||||| ||| ||||| Sbjct: 78814 tgattacagcaacaacaatgtcaccaatataagcgtatcgtcgattactagc---tccta 78870 Query: 377 tgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtct 436 ||| |||||||||||||||||| || ||||| ||||| || |||||||||||| |||| | Sbjct: 78871 tgattcgaatacacatcaatttgcgggctccgctattatcggctacatttaaatgggt-t 78929 Query: 437 tgaggttgaatcatattatttt 458 |||||||||||||||| ||||| Sbjct: 78930 tgaggttgaatcatatcatttt 78951
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 194 bits (98), Expect = 2e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 252 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcaatgc 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1365 tgtacgtacaattacagctcgaattacttcggatctttctagaggcatttggggcactgc 1306 Query: 312 gtctttgattacagcaacaataacatcaccaatacgagcatatcgc 357 ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1305 gtctttgattacagcaataataacatcaccaatacgagcatatcgc 1260 Score = 147 bits (74), Expect = 5e-32 Identities = 101/106 (95%), Gaps = 3/106 (2%) Strand = Plus / Minus Query: 418 gctacatttaaaagggtcttgaggttgaatcatattattttgatttcaatttgttatttc 477 ||||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||| Sbjct: 1199 gctacatttaaaagggtct-gaggttgaatcatattatttgg-tttccatttgttatttc 1142 Query: 478 aa-tgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 522 || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 aaatgcaaaaggatgaaagaaatattgtctttccagaaagaaaaac 1096 Score = 119 bits (60), Expect = 1e-23 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand = Plus / Minus Query: 549 ttttagggttctatatctctaatcgaataaattgactttcgtatgggcatttttactggc 608 |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||| Sbjct: 1068 ttttggggttctatatctctaatcgaagaaattgactt-cgtatgggcatttt-actggc 1011 Query: 609 cgctatggagatagctgctctagctacagttt 640 ||||| ||||||||||||||||||||||||| Sbjct: 1010 agctatagagatagctgctctagctacagttt 979 Score = 107 bits (54), Expect = 5e-20 Identities = 60/62 (96%) Strand = Plus / Minus Query: 296 gcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcatatc 355 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1261 gcatttggggcactgcgtctttgattacagcaataataacatcaccaatacgagcatatc 1202 Query: 356 gc 357 || Sbjct: 1201 gc 1200
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 54859 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 54918 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 54919 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 54977 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 54978 attgttgtcatagcgtattattataccgtcttcgcatttgaa 55019
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 137662 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 137721 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 137722 gattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 137780 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 137781 attgttgtcatagcgtattattataccgtcttcgcatttgaa 137822
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 130073 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 130132 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 130133 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 130191 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 130192 actgttgtcatagcgtattattataccgtcttcgcatttgaa 130233
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 186 bits (94), Expect = 6e-44 Identities = 146/162 (90%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66843 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattcctcggc 66902 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || ||||||||||| | |||||| ||||| || ||||||| |||||| ||||||||||| Sbjct: 66903 cattgcgccaaaaacgcaagttccatttggattcccttttt-atcaatgataaccgcagc 66961 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 | ||| |||||||| |||||||||||||||||||||||||| Sbjct: 66962 actgttgtcatagcgtattattataccgtcttcgcatttgaa 67003
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 331098 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 331047 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 331046 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330987 Query: 268 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 323 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330986 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330927 Query: 324 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 383 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330926 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330870 Query: 384 aatacacatcaatt 397 |||||| ||||||| Sbjct: 330869 aatacatatcaatt 330856 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 121 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 331166 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 331113
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330288 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330237 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330236 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330177 Query: 268 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 323 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330176 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330117 Query: 324 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 383 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330116 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330060 Query: 384 aatacacatcaatt 397 |||||| ||||||| Sbjct: 330059 aatacatatcaatt 330046 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 121 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330356 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330303
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330285 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330234 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330233 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330174 Query: 268 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 323 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330173 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 330114 Query: 324 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 383 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 330113 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 330057 Query: 384 aatacacatcaatt 397 |||||| ||||||| Sbjct: 330056 aatacatatcaatt 330043 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 121 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330353 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330300
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 170 bits (86), Expect = 4e-39 Identities = 212/254 (83%), Gaps = 15/254 (5%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 330142 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 330091 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 330090 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 330031 Query: 268 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 323 ||||| ||||||| | |||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 330030 gctcgtcttacttctgtctgatctttctagaggcattttgggcactgcttctttgattac 329971 Query: 324 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 383 |||||||||||| ||||||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 329970 agcaacaataacgtcaccaatatgagcatatcagtgattac---cagctcctaagattcg 329914 Query: 384 aatacacatcaatt 397 |||||| ||||||| Sbjct: 329913 aatacatatcaatt 329900 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 121 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 330210 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 330157
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 163 bits (82), Expect = 9e-37 Identities = 143/162 (88%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggc 140 |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5365 taatacttcatgagcttatgaaactattttagtaaaattcaattctctcaattccttggc 5306 Query: 141 aatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagc 200 || || |||||||| | |||||| ||||| || ||||||| |||||| ||||||| ||| Sbjct: 5305 gattgcaccaaaaacgcaagttccatttggatttccttttt-atcaatgataaccgtagc 5247 Query: 201 attgtcatcatagcggattattataccgtcttcgcatttgaa 242 | |||| |||||||| |||||||||| ||||||||||||||| Sbjct: 5246 actgtcgtcatagcgtattattatactgtcttcgcatttgaa 5205
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 155 bits (78), Expect = 2e-34 Identities = 144/165 (87%), Gaps = 7/165 (4%) Strand = Plus / Minus Query: 237 tttgaattctttacatgtacgtacaattacagctcgaattacttcgg----atctttcta 292 ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| Sbjct: 37711 tttgagttctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttcta 37652 Query: 293 gaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaatacgagcat 352 ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||| Sbjct: 37651 gaggcattttgggcactgcttctttgattacagcaacaataacgtcaccaatatgagcat 37592 Query: 353 atcgctgattaccagcagctcctatgactcgaatacacatcaatt 397 ||| ||||||| ||||||||| || ||||||||| ||||||| Sbjct: 37591 atcagtgattac---cagctcctaagattcgaatacatatcaatt 37550
>dbj|D13105.1|RICMT09 Oryza sativa (japonica cultivar-group) mitochondrial rp114 pseudogene, clone:pMTVSCT13 Length = 645 Score = 155 bits (78), Expect = 2e-34 Identities = 210/254 (82%), Gaps = 15/254 (5%) Strand = Plus / Plus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 161 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 212 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| ||||||||||||||||||||||||| Sbjct: 213 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattaca 272 Query: 268 gctcgaattacttcgg----atctttctagaggcatttggggcaatgcgtctttgattac 323 ||||| ||||||| | |||||||||||| ||||| ||||| ||| ||||||||||| Sbjct: 273 gctcgtcttacttctgtctgatctttctagagccattttgggcactgcttctttgattac 332 Query: 324 agcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcg 383 |||||||||||| || |||||| ||||||||| ||||||| ||||||||| || ||| Sbjct: 333 agcaacaataacgtccccaatatgagcatatcagtgattac---cagctcctaagattcg 389 Query: 384 aatacacatcaatt 397 |||||| ||||||| Sbjct: 390 aatacatatcaatt 403 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 68 ctactagtatttataatacttcaggagctaatgaaactattttggtaaaattca 121 ||||||||||||||||||| ||||||||| |||| ||| |||| || ||||||| Sbjct: 93 ctactagtatttataatacctcaggagctcatgagactctttttgtgaaattca 146
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 443 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147871 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 147812 Query: 503 gtctttccagaaagaaaaacc 523 |||||||||||||||| |||| Sbjct: 147811 gtctttccagaaagaagaacc 147791 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 147753 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 147696 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 147695 tagctgctctagctacagttt 147675
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 153 bits (77), Expect = 8e-34 Identities = 80/81 (98%) Strand = Plus / Minus Query: 443 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55633 tgaatcatattattttgatttcaatttgttatttcaatgcaaaaggatgaaagaaatatt 55574 Query: 503 gtctttccagaaagaaaaacc 523 |||||||||||||||| |||| Sbjct: 55573 gtctttccagaaagaagaacc 55553 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand = Plus / Minus Query: 560 tatatctctaatcgaataaattgactttcgtatgggcatttttactggccgctatggaga 619 ||||| ||||| |||| |||||||||| |||||||||||||| ||||| |||||||| | Sbjct: 55515 tatatttctaaccgaagaaattgactt-cgtatgggcattttg-ctggcagctatggaaa 55458 Query: 620 tagctgctctagctacagttt 640 ||||||||||||||||||||| Sbjct: 55457 tagctgctctagctacagttt 55437
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 145 bits (73), Expect = 2e-31 Identities = 160/189 (84%) Strand = Plus / Minus Query: 166 tttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggattattata 225 ||||| || |||||||||||||| ||||| | ||||||| | |||| | ||||||||| Sbjct: 33438 tttggatttcctttttgatcaatgataacgactgcattgttgttatagagtattattata 33379 Query: 226 ccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattacttcggat 285 |||| || ||||||||| || |||||||| | |||||||||| ||| ||||||| ||| Sbjct: 33378 ccgtttttgcatttgaaatccatacatgtatgcacaattacagatcgtattacttttgat 33319 Query: 286 ctttctagaggcatttggggcaatgcgtctttgattacagcaacaataacatcaccaata 345 |||||||||||||| | || || ||| ||||| ||||||||||||||||||||||||||| Sbjct: 33318 ctttctagaggcatcttggacactgcatcttttattacagcaacaataacatcaccaata 33259 Query: 346 cgagcatat 354 |||| |||| Sbjct: 33258 cgagtatat 33250
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 141 bits (71), Expect = 3e-30 Identities = 179/215 (83%) Strand = Plus / Minus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||| ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 5904 ttataatacctcaggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 5845 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||||||| || Sbjct: 5844 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattataactgc 5785 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||| |||||||| | ||||||||||||| | ||| | || |||||| ||||| Sbjct: 5784 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtacg 5725 Query: 258 tacaattacagctcgaattacttcggatctttcta 292 |||||||||||||| || ||||| |||||||||| Sbjct: 5724 tacaattacagctctgatcacttcagatctttcta 5690 Score = 60.0 bits (30), Expect = 9e-06 Identities = 117/144 (81%), Gaps = 4/144 (2%) Strand = Plus / Minus Query: 315 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 374 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 5667 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 5611 Query: 375 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 434 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 5610 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 5551 Query: 435 cttgaggttgaatcatattatttt 458 ||||||||||||||||| ||||| Sbjct: 5550 -ttgaggttgaatcatatcatttt 5528
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 141 bits (71), Expect = 3e-30 Identities = 126/143 (88%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 100 gaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcga 159 ||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| | | Sbjct: 87867 gaaactattttagtaaaattcaattctctcaattactcgacgatcgcgccaaaaacgcaa 87808 Query: 160 gttccttttgggttgcctttttgatcaattataaccgcagcattgtcatcatagcggatt 219 ||||| ||||| || ||||||| | ||| ||| ||| ||||||||||||||||| ||| Sbjct: 87807 gttccatttggatttccttttt-actaatgatatccgttgcattgtcatcatagcgtatt 87749 Query: 220 attataccgtcttcgcatttgaa 242 ||||||||||||||||||||||| Sbjct: 87748 attataccgtcttcgcatttgaa 87726
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 133 bits (67), Expect = 8e-28 Identities = 307/383 (80%), Gaps = 8/383 (2%) Strand = Plus / Minus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| || || ||||||||||||||||| || ||||| || | ||||||||| Sbjct: 45042 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcg 44983 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||| || ||| ||||| ||||||||||||||| || |||| || |||||| | |||||| Sbjct: 44982 ggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgc 44923 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 ||||| |||||||| ||||||||||| | | ||| | ||||||||| ||||| Sbjct: 44922 cgcattatcatcatactttattattataccattactacgttttagttctttacaagtacg 44863 Query: 258 tacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtct 315 |||||||||||| | || ||||| |||||||||| || | |||||| | ||| | | Sbjct: 44862 tacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgctttt 44805 Query: 316 ttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcct 375 |||||||||||||||| || ||||||||| |||||| || |||||| ||| |||| Sbjct: 44804 ttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcct 44748 Query: 376 atgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtc 435 |||| ||||||||||||||||| || ||||| ||||| || |||||||||||| ||| Sbjct: 44747 atgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggt- 44689 Query: 436 ttgaggttgaatcatattatttt 458 ||||||||||||||||| ||||| Sbjct: 44688 ttgaggttgaatcatatcatttt 44666
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 125 bits (63), Expect = 2e-25 Identities = 177/215 (82%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 79709 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 79768 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||| || || | ||| | ||||||||||||||| || |||| ||||||||| | ||| || Sbjct: 79769 ggcgattgcacaaaagattcgagttccttttggatttccttcttgatcaatgacaactgc 79828 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||| |||||||| | ||||||||||||| | ||||| ||||||||| ||||| Sbjct: 79829 agcattatcatcatactgaattattataccgttgctacgtttgagttctttacaagtacg 79888 Query: 258 tacaattacagctcgaattacttcggatctttcta 292 |||||||||||||| || ||||| |||||||||| Sbjct: 79889 tacaattacagctctgatcacttctgatctttcta 79923 Score = 75.8 bits (38), Expect = 2e-10 Identities = 119/144 (82%), Gaps = 4/144 (2%) Strand = Plus / Plus Query: 315 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 374 ||||||||||||||||| || ||||||||| ||||||||| |||||| |||||| Sbjct: 79946 tttgattacagcaacaacaatgtcaccaatataagcatatcgtcgattac---tagctcc 80002 Query: 375 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 434 || || |||||||||||||| || || ||||| ||||| || |||||||| ||| | || Sbjct: 80003 taggattcgaatacacatcagttcgcgtgctccgctattatcagctacattcaaatgagt 80062 Query: 435 cttgaggttgaatcatattatttt 458 ||||||||||||||||| ||||| Sbjct: 80063 -ttgaggttgaatcatatcatttt 80085
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 123 bits (62), Expect = 8e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 73 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 132 |||| |||||||||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 60553 agtacttataatacttcgggagccaatgaaactattttcgtgaaattcaattgtctcaat 60612 Query: 133 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 192 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 60613 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 60672 Query: 193 accgcagcattgtcatca 210 || || |||||||||||| Sbjct: 60673 acggctgcattgtcatca 60690 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 370 gctcctatgactcgaatacacatcaattttcgagctccact 410 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 60847 gctcctagaactcgaatacacattatttttcgggctccact 60887
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 117 bits (59), Expect = 5e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| || || ||||||||||||||||| || ||||| || | |||||||||| Sbjct: 954 ttataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattcccg 1013 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgc 197 ||| || |||| ||| | ||||||||||||||| || |||| ||||||||||| ||| || Sbjct: 1014 ggcgattgcgcaaaagattcgagttccttttggatttccttcttgatcaattacaactgc 1073 Query: 198 agcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacg 257 |||||| |||||||| | ||||||||||||| | ||| | || |||||| || || Sbjct: 1074 agcattatcatcatactgaattattataccgttgctacgttttagttgtttacaagtccg 1133 Query: 258 tacaattacagctcgaattacttcggatctttcta 292 |||||||||||||| || ||||| |||||||||| Sbjct: 1134 tacaattacagctctgatcacttctgatctttcta 1168
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 73 agtatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaat 132 |||| |||||| ||||| ||||| |||||||||||||| || |||||||||| ||||||| Sbjct: 58649 agtacttataagacttcgggagccaatgaaactattttagtgaaattcaattgtctcaat 58708 Query: 133 tcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattata 192 |||| |||| || ||||||||||||||||||||||| || |||| |||||||| | | Sbjct: 58709 tcctgagcaaccggaccaaaaactcgagttccttttggatttccttcctgatcaatgaca 58768 Query: 193 accgcagcattgtcatca 210 || || |||||||||||| Sbjct: 58769 acggctgcattgtcatca 58786 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 370 gctcctatgactcgaatacacatcaattttcgagctccact 410 ||||||| |||||||||||||| | |||||| |||||||| Sbjct: 58943 gctcctagaactcgaatacacattatttttcgggctccact 58983
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 109 bits (55), Expect = 1e-20 Identities = 250/311 (80%), Gaps = 8/311 (2%) Strand = Plus / Plus Query: 150 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 209 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 30545 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 30604 Query: 210 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 269 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 30605 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 30664 Query: 270 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 327 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 30665 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 30722 Query: 328 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 387 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 30723 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 30779 Query: 388 cacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaat 447 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 30780 cacatcaattcgcgggctccgctattatcggctacatttaaataggt-ttgaggttgaat 30838 Query: 448 catattatttt 458 ||||| ||||| Sbjct: 30839 catatcatttt 30849
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 109 bits (55), Expect = 1e-20 Identities = 250/311 (80%), Gaps = 8/311 (2%) Strand = Plus / Minus Query: 150 aaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtcatc 209 ||||| ||||||||||||||| || |||| || |||||| | |||||| ||||| ||||| Sbjct: 114958 aaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatc 114899 Query: 210 atagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagc 269 ||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| Sbjct: 114898 atactttattattataccattactacgttttagttctttacaagtacgtacaattacagc 114839 Query: 270 tcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagca 327 | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||| Sbjct: 114838 cctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagca 114781 Query: 328 acaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaata 387 |||| || ||||||||| |||||| || |||||| ||| |||||||| ||||||| Sbjct: 114780 acaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaata 114724 Query: 388 cacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttgaat 447 |||||||||| || ||||| ||||| || |||||||||||| ||| |||||||||||| Sbjct: 114723 cacatcaattcgcgggctccgctattatcggctacatttaaataggt-ttgaggttgaat 114665 Query: 448 catattatttt 458 ||||| ||||| Sbjct: 114664 catatcatttt 114654
>gb|M60180.1|OBECPRPB O.ammophila ribosomal protein L14 and S8 (rpl14, rps8) genes, 5' end and 3' end Length = 625 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctc 137 ||||||||| ||||| ||||||||||||||||| || ||| | || ||||||||||| | Sbjct: 524 ttataatacctcaggtgctaatgaaactattttagtgaaacttaactctctcaattcgtg 583 Query: 138 ggcaatcgcgccaaaaactcgagttccttttgg 170 ||||||||| ||||||||||| ||||||||||| Sbjct: 584 ggcaatcgcaccaaaaactcgggttccttttgg 616
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 91.7 bits (46), Expect = 3e-15 Identities = 106/126 (84%) Strand = Plus / Minus Query: 85 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatc 144 |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 41481 acttcaggagctaaagaaactattttagtaaaatttaagtctctcaattctctggcaact 41422 Query: 145 gcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattg 204 | ||||||||||| |||||| |||| ||||||| ||||| || | |||||||||||| Sbjct: 41421 ggaccaaaaactcgtgttcctcttggattgccttcttgattgatgacaaccgcagcatta 41362 Query: 205 tcatca 210 |||||| Sbjct: 41361 tcatca 41356 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 ||||||||||| | ||||||||||| || ||||| |||||||||||| Sbjct: 41187 cgaatacacatgagctttcgagctccgctgttgtcggctacatttaaa 41140
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 87.7 bits (44), Expect = 4e-14 Identities = 113/136 (83%) Strand = Plus / Plus Query: 75 tatttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 134 ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 76250 tatttataaaacttctggagctaacgaaactattttagtaaaattagattctcttaattc 76309 Query: 135 ctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataac 194 ||||| | ||||||||||||||||||||||| || |||| ||||| ||| | ||| Sbjct: 76310 tctagcaattggaccaaaaactcgagttccttttggatttccttcttgattaataacaac 76369 Query: 195 cgcagcattgtcatca 210 || ||||| |||||| Sbjct: 76370 tgctgcattatcatca 76385 Score = 69.9 bits (35), Expect = 1e-08 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 372 tcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaag 431 |||||| |||||||| ||||| | |||||||||||||||||| ||||| ||||||||| Sbjct: 76544 tcctataactcgaatgcacattagttttcgagctccactattatctgcaacatttaaata 76603 Query: 432 ggtcttgaggttgaatcat 450 || ||||||||||||||| Sbjct: 76604 agt-ttgaggttgaatcat 76621 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 241 aattctttacatgtacgtacaattacagctc 271 ||||||||||| ||||||||||||||||||| Sbjct: 76416 aattctttacacgtacgtacaattacagctc 76446
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 254 tacgtacaattacagctcgaattacttcggatctttctagaggcatttggg 304 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 94927 tacgtacaattacagctcaaattacttcggatctttccagaggcatttggg 94877
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 85.7 bits (43), Expect = 2e-13 Identities = 114/135 (84%), Gaps = 2/135 (1%) Strand = Plus / Plus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcct 136 |||||||||||||||| ||||| ||||||||||| |||||||| |||| | ||||| | Sbjct: 79910 tttataatacttcaggtgctaacgaaactattttagtaaaattagattcacgtaattc-t 79968 Query: 137 cg-gcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataacc 195 || |||| | ||||||||||||||||||||| || || |||| ||||| ||| ||||| Sbjct: 79969 cgtgcaacagggccaaaaactcgagttcctttaggatttccttcttgattaataataact 80028 Query: 196 gcagcattgtcatca 210 |||||||| |||||| Sbjct: 80029 gcagcattatcatca 80043 Score = 52.0 bits (26), Expect = 0.002 Identities = 57/66 (86%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 385 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttg 444 |||||||| ||||| || ||||||||||| || |||||||||||| || ||||||||| Sbjct: 80215 atacacattaatttgcgcgctccactattatcagctacatttaaataagt-ttgaggttg 80273 Query: 445 aatcat 450 |||||| Sbjct: 80274 aatcat 80279
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 322 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 370 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 243 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 299 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 187 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 243 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccaaaaactcgagttccttt 167 |||||||||||||||||||| Sbjct: 92 ccaaaaactcgagttccttt 111
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 |||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 100021 tcgaatacacatcagttttcgagctccactgttgtctgctacatttaaa 100069 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 243 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagaggcat 299 ||||||||| ||||||||||||||||||| || |||||| ||| ||| ||||||||| Sbjct: 99886 ttctttacaagtacgtacaattacagctctaactacttctgatttttttagaggcat 99942 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ccaaaaactcgagttccttt 167 |||||||||||||||||||| Sbjct: 99791 ccaaaaactcgagttccttt 99810
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 77 tttataatacttcaggagctaatgaaactattttggtaaaattcaattctct 128 ||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 5586 tttataatacttcaggagccaatgaaactattttagtaaaattgaattctct 5535 Score = 50.1 bits (25), Expect = 0.009 Identities = 62/73 (84%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgag 440 |||||||||||| |||| ||||||||| |||||||||||||| ||| || ||||| Sbjct: 5285 tcgaatacacattggttttttagctccactgttgtctgctacattcaaatacgt-ttgag 5227 Query: 441 gttgaatcatatt 453 ||||||||||||| Sbjct: 5226 gttgaatcatatt 5214
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 79.8 bits (40), Expect = 1e-11 Identities = 59/64 (92%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 422 catttaaaagggtcttgaggttgaatcatattattttgatttcaatttgttatttcaatg 481 ||||||||||||||| ||||||||||||||| ||||| |||| ||| ||||||||||||| Sbjct: 568 catttaaaagggtct-gaggttgaatcatatcatttttatttgaatctgttatttcaatg 510 Query: 482 caaa 485 |||| Sbjct: 509 caaa 506
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 77.8 bits (39), Expect = 4e-11 Identities = 73/84 (86%), Gaps = 4/84 (4%) Strand = Plus / Plus Query: 245 ctttacatgtacgtacaattacagctcgaattact----tcggatctttctagaggcatt 300 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct: 89363 ctttacatgtacgtacaattacagctcgtcttacttctgtctgatctttctagaggcatt 89422 Query: 301 tggggcaatgcgtctttgattaca 324 | ||||| ||| |||||| ||||| Sbjct: 89423 ttgggcactgcttctttggttaca 89446
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 132 ttcctcggcaatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattat 191 ||||||||| |||| ||||||||| |||||||||||||| || | ||||||| |||| || Sbjct: 117502 ttcctcggcgatcgtgccaaaaacgcgagttccttttggatttcttttttgaccaatgat 117561 Query: 192 aaccgcagcattgtcatc 209 ||||| ||||||||||| Sbjct: 117562 aaccgttgcattgtcatc 117579
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 75.8 bits (38), Expect = 2e-10 Identities = 113/136 (83%), Gaps = 4/136 (2%) Strand = Plus / Plus Query: 323 cagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactc 382 |||||||||||| ||||| ||| |||||||||| |||||| ||| ||| |||| || Sbjct: 1 cagcaacaataatgtcaccgatatgagcatatcgacgattactagc---tccgatgattc 57 Query: 383 gaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggt 442 |||||||||| |||| |||||| ||||| || || || ||||| ||| |||| ||||||| Sbjct: 58 gaatacacattaattctcgagccccactgttatccgcgacattcaaacgggt-ttgaggt 116 Query: 443 tgaatcatattatttt 458 |||||||||| ||||| Sbjct: 117 tgaatcatatcatttt 132
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 381 tcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 |||||||||||||||||||||||||||||| ||||||| ||| |||||| Sbjct: 79713 tcgaatacacatcaattttcgagctccactgttgtctgttacttttaaa 79761 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Plus Query: 86 cttcaggagctaatgaaactattttggtaaaatt 119 ||||||||||||| || |||||||| |||||||| Sbjct: 79421 cttcaggagctaaagatactattttagtaaaatt 79454
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 69.9 bits (35), Expect = 1e-08 Identities = 101/124 (81%), Gaps = 8/124 (6%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcagcattgtca 207 ||||||||||||||||||||||| || |||| ||||| ||| | ||||| ||| Sbjct: 127299 ccaaaaactcgagttccttttggatttccttcttgattaatgacaaccg--------tca 127248 Query: 208 tcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattaca 267 ||||| || ||||| ||||||| || | ||||| |||||||||||||||||||||||| Sbjct: 127247 tcatatcgtattatcataccgttgtcacgtttgagttctttacatgtacgtacaattact 127188 Query: 268 gctc 271 |||| Sbjct: 127187 gctc 127184 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgat 184 ||||||||||||||||||||||| || |||| ||||| Sbjct: 126033 ccaaaaactcgagttccttttggatttccttcttgat 125997 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 148 ccaaaaactcgagttccttttgggttgcctttttgat 184 ||||||||||||||||||||||| || |||| ||||| Sbjct: 121959 ccaaaaactcgagttccttttggatttccttcttgat 121923
>gb|DQ069422.1| Ginkgo biloba ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 67.9 bits (34), Expect = 4e-08 Identities = 108/130 (83%), Gaps = 2/130 (1%) Strand = Plus / Minus Query: 81 taatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcg-g 139 ||||||||| ||||| |||| ||||||||| || ||||| |||| ||||||||| ||| | Sbjct: 366 taatacttcgggagccaatggaactatttttgtgaaattaaattgtctcaattc-tcgag 308 Query: 140 caatcgcgccaaaaactcgagttccttttgggttgcctttttgatcaattataaccgcag 199 ||| | |||||||||||||||||||| || || |||| |||||||| | ||| || | Sbjct: 307 caactgaaccaaaaactcgagttcctttcggatttccttcctgatcaatgacaactgctg 248 Query: 200 cattgtcatc 209 |||||||||| Sbjct: 247 cattgtcatc 238
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 379 actcgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 |||||||||||||| ||||| ||||| |||||||| || |||||||||||| Sbjct: 140455 actcgaatacacattaatttgcgagcaccactattatcagctacatttaaa 140505 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 85 acttcaggagctaatgaaactattttggtaaaatt 119 |||||||||||||| ||||| ||||| |||||||| Sbjct: 140167 acttcaggagctaaagaaacaatttttgtaaaatt 140201
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 113 taaaattcaattctctcaattcctcggcaatcgcgccaaaaac 155 ||||||||||| ||||| |||||||||| |||||||||||||| Sbjct: 20850 taaaattcaatactctcgattcctcggcgatcgcgccaaaaac 20808
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 60.0 bits (30), Expect = 9e-06 Identities = 117/144 (81%), Gaps = 4/144 (2%) Strand = Plus / Minus Query: 315 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcc 374 ||||||||||||||||| || || |||||| ||||||||| |||||| ||| ||| Sbjct: 1258 tttgattacagcaacaacaatgtcgccaatataagcatatcgtcgattactagc---tcc 1202 Query: 375 tatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggt 434 || || |||||||||||||| || || ||||| || || || |||||||| ||| | || Sbjct: 1201 taggattcgaatacacatcagttcacgtgctccgctgttatccgctacattcaaatgagt 1142 Query: 435 cttgaggttgaatcatattatttt 458 ||||||||||||||||| ||||| Sbjct: 1141 -ttgaggttgaatcatatcatttt 1119
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 58.0 bits (29), Expect = 4e-05 Identities = 36/37 (97%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 422 catttaaaagggtcttgaggttgaatcatattatttt 458 ||||||||||||||| ||||||||||||||||||||| Sbjct: 561 catttaaaagggtct-gaggttgaatcatattatttt 526
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 |||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 76668 cgaatacacatcaacttgcgagctccgctattatctgctacatctaaa 76715
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 28989 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 28942 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 245 ctttacatgtacgtacaattacagctcg 272 |||||| |||||||||||| |||||||| Sbjct: 29123 ctttacgtgtacgtacaataacagctcg 29096
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatttaaa 429 ||||||||||| |||| ||||| |||||||| ||||||||||||||| Sbjct: 588 cgaatacacattaattcacgagcaccactattatctgctacatttaaa 541 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 245 ctttacatgtacgtacaattacagctcg 272 |||||| |||||||||||| |||||||| Sbjct: 722 ctttacgtgtacgtacaataacagctcg 695
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 379 actcgaatacacatcaattttcgagctccactatt 413 |||||||||||||| ||||| |||||||||||||| Sbjct: 1744 actcgaatacacattaatttacgagctccactatt 1710 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 79 tataatacttcaggagctaatgaaactattttggtaaaatt 119 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 2041 tataatacttccggagctaaagaaataatttttgtaaaatt 2001 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 321 tacagcaacaataacatcaccaatacgagcata 353 |||||| ||||| ||||||||||| |||||||| Sbjct: 1799 tacagcgacaattacatcaccaattcgagcata 1767
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 104 ctattttggtaaaattcaattctctcaattc 134 ||||||| ||||||||||||||||||||||| Sbjct: 45211 ctattttagtaaaattcaattctctcaattc 45181
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 379 actcgaatacacatcaattttcgagctccactatt 413 |||||||||||||| ||||| |||||||||||||| Sbjct: 52478 actcgaatacacattaatttacgagctccactatt 52512 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 321 tacagcaacaataacatcaccaatacgagcata 353 |||||| ||||| ||||||||||| |||||||| Sbjct: 52423 tacagcgacaattacatcaccaattcgagcata 52455 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 79 tataatacttcaggagctaatgaaactattttggtaaaatt 119 ||||||||||| |||||||| |||| ||||| |||||||| Sbjct: 52181 tataatacttccggagctaaagaaataatttttgtaaaatt 52221
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 52.0 bits (26), Expect = 0.002 Identities = 60/70 (85%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 385 atacacatcaattttcgagctccactattgtctgctacatttaaaagggtcttgaggttg 444 |||||||| |||||||| ||||||||||| ||||| || |||| | || ||||||||| Sbjct: 16479 atacacattaattttcgtgctccactattatctgcgacgtttacatatgt-ttgaggttg 16421 Query: 445 aatcatatta 454 |||||||||| Sbjct: 16420 aatcatatta 16411
>gb|AF050665.1|AF050665 Spirogyra maxima tRNA-Ile gene, complete sequence; and ribosomal protein L23 (rpl23), ribosomal protein L2 (rpl2), ribosomal protein S19 (rps19), ribosomal protein L22 (rpl22), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein S8 (rps8), initiation factor A (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and RNA polymerase alpha subunit (rpoA) genes, complete cds, chloroplast genes for chloroplast products Length = 8794 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 85 acttcaggagctaatgaaactattttggtaaaattcaattctctcaattc 134 |||||||||||||| || ||||| || |||||||| |||||||| ||||| Sbjct: 5584 acttcaggagctaaagatactatcttagtaaaatttaattctcttaattc 5535 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 382 cgaatacacatcaattttcgagctccact 410 ||||||||||| ||||| ||||||||||| Sbjct: 5290 cgaatacacattaatttacgagctccact 5262
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 385 atacacatcaattttcgagctccactattgtctgctacatt 425 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 879333 atacacatcaatttacgagcgccgctattgtctgcgacatt 879293
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 385 atacacatcaattttcgagctccactattgtctgctacatt 425 |||||||||||||| ||||| || ||||||||||| ||||| Sbjct: 5047012 atacacatcaatttacgagcgccgctattgtctgcgacatt 5047052
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 50.1 bits (25), Expect = 0.009 Identities = 35/37 (94%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 422 catttaaaagggtcttgaggttgaatcatattatttt 458 ||||||||||||||| ||||||||||||||| ||||| Sbjct: 533 catttaaaagggtct-gaggttgaatcatatgatttt 498
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 50.1 bits (25), Expect = 0.009 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 418 gctacatttaaaagggtcttgaggttgaatcatattatttt 458 |||||||| |||||||||| ||||||||||||||| ||||| Sbjct: 2049 gctacattcaaaagggtct-gaggttgaatcatatcatttt 2010
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 398 ttcgagctccactattgtctgctacatttaaa 429 |||||||||||||||| || |||||||||||| Sbjct: 94493 ttcgagctccactattatcggctacatttaaa 94462
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 48.1 bits (24), Expect = 0.036 Identities = 36/40 (90%) Strand = Plus / Plus Query: 329 caataacatcaccaatacgagcatatcgctgattaccagc 368 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 98741 caataacgtcaccaatatgagcatatcagtgattaccagc 98780
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.036 Identities = 36/40 (90%) Strand = Plus / Minus Query: 329 caataacatcaccaatacgagcatatcgctgattaccagc 368 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11796144 caataacgtcaccaatatgagcatatcagtgattaccagc 11796105 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 605 tggccgctatggagatagctgctctagctac 635 |||| |||||||| ||||||||||||||||| Sbjct: 9208202 tggcagctatggaaatagctgctctagctac 9208232
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.036 Identities = 36/40 (90%) Strand = Plus / Minus Query: 329 caataacatcaccaatacgagcatatcgctgattaccagc 368 ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 11874555 caataacgtcaccaatatgagcatatcagtgattaccagc 11874516 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 605 tggccgctatggagatagctgctctagctac 635 |||| |||||||| ||||||||||||||||| Sbjct: 9279899 tggcagctatggaaatagctgctctagctac 9279929
>ref|NM_128441.3| Arabidopsis thaliana structural constituent of ribosome AT2G28820 mRNA, complete cds Length = 1156 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 319 attacagcaacaataacatcaccaatacgagcata 353 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 999 attacggcaacaacaacatcaccaatatgagcata 965
>gb|AC135498.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0010M24, complete sequence Length = 164853 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 605 tggccgctatggagatagctgctctagctac 635 |||| |||||||| ||||||||||||||||| Sbjct: 75818 tggcagctatggaaatagctgctctagctac 75788
>gb|DQ069419.1| Typha latifolia ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 408 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 618 gatagctgctctagctacagttt 640 ||||||||||||||||||||||| Sbjct: 357 gatagctgctctagctacagttt 335
>emb|AL359081.10| Human DNA sequence from clone RP11-541F9 on chromosome 1, complete sequence Length = 109288 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 98 atgaaactattttggtaaaattcaatt 124 |||||||||||||||||| |||||||| Sbjct: 91500 atgaaactattttggtaacattcaatt 91474
>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence Length = 107097 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 319 attacagcaacaataacatcaccaatacgagcata 353 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 38089 attacggcaacaacaacatcaccaatatgagcata 38123
>gb|AY219111.2| Arabidopsis thaliana hypothetical protein (At2g28820/F8N16.11) mRNA, complete cds Length = 1179 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 319 attacagcaacaataacatcaccaatacgagcata 353 ||||| ||||||| ||||||||||||| ||||||| Sbjct: 1002 attacggcaacaacaacatcaccaatatgagcata 968
>dbj|AP000606.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTO24 Length = 82360 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 449 atattattttgatttcaatttgttatt 475 |||||||||||||||||| |||||||| Sbjct: 13778 atattattttgatttcaaattgttatt 13752
>dbj|AB028608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9 Length = 43500 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 83 atacttcaggagctaatgaaactattt 109 |||| |||||||||||||||||||||| Sbjct: 22874 atacctcaggagctaatgaaactattt 22900
>gb|AC132335.3| Mus musculus BAC clone RP24-230C24 from chromosome 10, complete sequence Length = 180642 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 aaggatgaaagaaatattgtctttcc 510 |||||||||||||||||| ||||||| Sbjct: 116209 aaggatgaaagaaatattttctttcc 116234
>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20 Length = 91193 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 451 attattttgatttcaatttgtt 472 |||||||||||||||||||||| Sbjct: 90746 attattttgatttcaatttgtt 90725
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 44.1 bits (22), Expect = 0.56 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 422 catttaaaagggtcttgaggttgaatcata 451 |||||||||||||| ||||||||||||||| Sbjct: 543 catttaaaagggtc-tgaggttgaatcata 515
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 485 aaggatgaaagaaatattgtctttcc 510 |||||||||||||||||| ||||||| Sbjct: 184750 aaggatgaaagaaatattttctttcc 184775
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ccttttgggttgcctttttga 183 ||||||||||||||||||||| Sbjct: 1617545 ccttttgggttgcctttttga 1617565 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 78 ttataatacttcaggagctaatgaaactatttt 110 |||||| ||||||||||||| |||||| ||||| Sbjct: 352059 ttataaaacttcaggagctagtgaaacgatttt 352027
>emb|CT009479.4| M.truncatula DNA sequence from clone MTH2-164E3 on chromosome 3, complete sequence Length = 133351 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 474 tttcaatgcaaaaggatgaaagaaa 498 ||||||| ||||||||||||||||| Sbjct: 58265 tttcaatacaaaaggatgaaagaaa 58241
>gb|AC132083.3| Mus musculus BAC clone RP24-540G23 from chromosome 5, complete sequence Length = 158764 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 acaatctactaatattaattc 50 ||||||||||||||||||||| Sbjct: 90572 acaatctactaatattaattc 90592
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 atgaaactattttggtaaaat 118 ||||||||||||||||||||| Sbjct: 13532 atgaaactattttggtaaaat 13552
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 tgtctttccagaaagaaaaac 522 ||||||||||||||||||||| Sbjct: 87284 tgtctttccagaaagaaaaac 87304
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 acagcaacaataacatcacca 342 ||||||||||||||||||||| Sbjct: 263 acagcaacaataacatcacca 283
>emb|AL359821.11| Human DNA sequence from clone RP11-175G14 on chromosome 1 Contains part of the NEGR1 gene for neuronal growth regulator 1 and part of a novel gene, complete sequence Length = 117951 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 491 gaaagaaatattgtctttccagaaa 515 |||||||||||||||||| |||||| Sbjct: 43956 gaaagaaatattgtctttacagaaa 43980
>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the 5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473), a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene for optineurin, a small nuclear ribonucleoprotein polypeptide G (SNRPG) pseudogene, a pseudogene similar to part of COX10 homolog, cytochrome c oxidase assembly protein heme A: farnesyltransferase (yeast) (COX10), a novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein L36A (RPL36A) pseudogene, the 5' end of the MCM10 gene for MCM10 minichromosome maintenance deficient 10 (S. cerevisiae), a pseudogene similar to part of chromodomain protein Y chromosome 1 (CDY1) and two CpG islands, complete sequence Length = 196203 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 460 atttcaatttgttatttcaat 480 ||||||||||||||||||||| Sbjct: 148025 atttcaatttgttatttcaat 148045
>emb|AL122003.17|HSJ659I19 Human DNA sequence from clone RP4-659I19 on chromosome 1q42.11-42.3 Contains a chromosome 9 open reading frame 78 (C9orf78) pseudogene, a novel gene (MGC13186), the 3' end of a novel gene (FLJ11383) and a CpG island, complete sequence Length = 155065 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 aatgaaactattttggtaaaa 117 ||||||||||||||||||||| Sbjct: 66463 aatgaaactattttggtaaaa 66483
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactatttt 110 ||||||||||||||| || |||||||| ||||| Sbjct: 109779 ttataatacttcaggtgccaatgaaacgatttt 109811
>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04, complete sequence Length = 136713 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 tttcaatttgttatttcaatgcaaa 485 ||||||||||| ||||||||||||| Sbjct: 83648 tttcaatttgtaatttcaatgcaaa 83672
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 aaaggatgaaagaaatattgt 504 ||||||||||||||||||||| Sbjct: 10896 aaaggatgaaagaaatattgt 10876
>dbj|AK034773.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430035O09 product:RAD17 homolog (S. pombe), full insert sequence Length = 2615 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 ttattttgatttcaatttgtt 472 ||||||||||||||||||||| Sbjct: 1994 ttattttgatttcaatttgtt 2014
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 78 ttataatacttcaggagctaatgaaactatttt 110 ||||||||||||||| || |||||||| ||||| Sbjct: 156967 ttataatacttcaggtgccaatgaaacgatttt 156935 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tattttgatttcaatttgttattt 476 ||||||||||| |||||||||||| Sbjct: 1406237 tattttgattttaatttgttattt 1406214
>gb|AC109358.3| Homo sapiens BAC clone RP11-648D16 from 2, complete sequence Length = 49153 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 attttggtaaaattcaattct 126 ||||||||||||||||||||| Sbjct: 27739 attttggtaaaattcaattct 27719
>gb|AC073885.5| Homo sapiens BAC clone RP11-70L16 from 2, complete sequence Length = 120379 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 taaaattcaattctctcaatt 133 ||||||||||||||||||||| Sbjct: 93691 taaaattcaattctctcaatt 93671
>gb|AF283525.1|AF283519S7 Homo sapiens FIP2 gene, exons 11, 12 and 13 Length = 5047 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 460 atttcaatttgttatttcaat 480 ||||||||||||||||||||| Sbjct: 151 atttcaatttgttatttcaat 171
>dbj|AK120872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M09, full insert sequence Length = 5675 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 461 tttcaatttgttatttcaatgcaaa 485 ||||||||||| ||||||||||||| Sbjct: 2487 tttcaatttgtaatttcaatgcaaa 2511
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 42.1 bits (21), Expect = 2.2 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 422 catttaaaagggtcttgaggttgaatcat 450 |||||||||||||| |||||||||||||| Sbjct: 558 catttaaaagggtc-tgaggttgaatcat 531
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 78 ttataatacttcaggagctaatgaaactatttt 110 ||||||||||||||| || |||||||| ||||| Sbjct: 1801391 ttataatacttcaggtgccaatgaaacgatttt 1801423
>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence Length = 240928 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 atgaaactattttggtaaaat 118 ||||||||||||||||||||| Sbjct: 106739 atgaaactattttggtaaaat 106759
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctac 422 ||||||||||| | ||||| ||| |||||||| |||||||| Sbjct: 100999 cgaatacacattatttttctagcgccactattatctgctac 101039
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 acagcaacaataacatcacca 342 ||||||||||||||||||||| Sbjct: 6095 acagcaacaataacatcacca 6075
>gb|AC165159.2| Mus musculus BAC clone RP23-234N1 from chromosome 13, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 ttattttgatttcaatttgtt 472 ||||||||||||||||||||| Sbjct: 79695 ttattttgatttcaatttgtt 79675
>ref|XM_639569.1| Dictyostelium discoideum histidine kinase (DDB0185039), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cagcaacaataacatcacca 342 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_639498.1| Dictyostelium discoideum histidine kinase DhkI (DDB0217151), partial mRNA Length = 5211 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cagcaacaataacatcacca 342 |||||||||||||||||||| Sbjct: 1427 cagcaacaataacatcacca 1446
>ref|XM_634860.1| Dictyostelium discoideum hypothetical protein (DDB0186277), partial mRNA Length = 4602 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tattttgatttcaatttgttattt 476 ||||||||||||||||| |||||| Sbjct: 413 tattttgatttcaattttttattt 390
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 tctttccagaaagaaaaacc 523 |||||||||||||||||||| Sbjct: 127972 tctttccagaaagaaaaacc 127953
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tactagtatttataatactt 88 |||||||||||||||||||| Sbjct: 140243 tactagtatttataatactt 140224
>gb|AY681321.1| Agelena orientalis toxin-like structure Agel_24 precursor, mRNA, complete cds Length = 378 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 attttgatttcaatttgtta 473 |||||||||||||||||||| Sbjct: 245 attttgatttcaatttgtta 264
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tctttgattacagcaacaat 332 |||||||||||||||||||| Sbjct: 129128 tctttgattacagcaacaat 129147
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tattgtctgctacatttaaa 429 |||||||||||||||||||| Sbjct: 112737 tattgtctgctacatttaaa 112756
>gb|DQ069416.1| Ginkgo biloba ribosomal protein L16 (rpl16) gene, partial cds; chloroplast Length = 414 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 619 atagctgctctagctacagt 638 |||||||||||||||||||| Sbjct: 356 atagctgctctagctacagt 337
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tctgctacatttaaaagggt 434 |||||||||||||||||||| Sbjct: 68129 tctgctacatttaaaagggt 68148
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gtcttcgcatttgaattctt 247 |||||||||||||||||||| Sbjct: 71969 gtcttcgcatttgaattctt 71950
>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete sequence Length = 168549 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgattacagcaacaataaca 336 |||||||||||||||||||| Sbjct: 82901 tgattacagcaacaataaca 82920
>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete sequence Length = 175745 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 attaattctttgatctaaat 62 |||||||||||||||||||| Sbjct: 99502 attaattctttgatctaaat 99521
>emb|AL603882.13| Human DNA sequence from clone RP11-630I5 on chromosome 1 Contains the 5' end of the gene for microtubule associated testis specific serine/threonine protein kinase (MAST205), a ribosomal protein L6 (RPL6) pseudogene and a CpG island, complete sequence Length = 78745 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 aaatattgtctttccagaaa 515 |||||||||||||||||||| Sbjct: 30144 aaatattgtctttccagaaa 30163
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 tctttccagaaagaaaaacc 523 |||||||||||||||||||| Sbjct: 21328 tctttccagaaagaaaaacc 21309
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcaatgcaaaaggatgaaag 495 |||||||||||||||||||| Sbjct: 72832 tcaatgcaaaaggatgaaag 72851
>gb|AC159379.14| Mus musculus 10 BAC RP23-210F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226172 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 atgcaaaaggatgaaagaaatatt 502 ||||||||||| |||||||||||| Sbjct: 40830 atgcaaaaggaagaaagaaatatt 40853
>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 19/20 Length = 249050 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ttcctcggcaatcgcgccaa 151 |||||||||||||||||||| Sbjct: 190554 ttcctcggcaatcgcgccaa 190535
>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence Length = 164343 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 aagaaatattgtctttccag 512 |||||||||||||||||||| Sbjct: 135640 aagaaatattgtctttccag 135659
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 aatcatattattttgatttc 464 |||||||||||||||||||| Sbjct: 64510 aatcatattattttgatttc 64491
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 accaatacgagcatatcgct 358 |||||||||||||||||||| Sbjct: 204840 accaatacgagcatatcgct 204859
>gb|AC108100.2| Homo sapiens chromosome 5 clone RP11-125A21, complete sequence Length = 85231 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 atttcaatttgttatttcaa 479 |||||||||||||||||||| Sbjct: 32554 atttcaatttgttatttcaa 32573
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 catttgaattctttacatgt 254 |||||||||||||||||||| Sbjct: 65739 catttgaattctttacatgt 65720
>emb|BX664600.7| Zebrafish DNA sequence from clone CH211-112M13, complete sequence Length = 167489 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 attaattctttgatctaaat 62 |||||||||||||||||||| Sbjct: 80174 attaattctttgatctaaat 80193
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 atgcaaaaggatgaaagaaatatt 502 ||||||||||| |||||||||||| Sbjct: 197474 atgcaaaaggaagaaagaaatatt 197497
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 caattataaccgcagcattgtcat 208 ||||||||||| |||||||||||| Sbjct: 22762 caattataacctcagcattgtcat 22785
>gb|AC087254.2| Danio rerio clone 91J1, complete sequence Length = 77731 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 attaattctttgatctaaat 62 |||||||||||||||||||| Sbjct: 59268 attaattctttgatctaaat 59249
>gb|AF362371.1|AF362371 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds Length = 6074 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cagcaacaataacatcacca 342 |||||||||||||||||||| Sbjct: 1666 cagcaacaataacatcacca 1685
>gb|AC103567.2| Caenorhabditis elegans cosmid Y51F10, complete sequence Length = 89249 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 taatgaaactattttggtaaaatt 119 |||||||||| ||||||||||||| Sbjct: 60315 taatgaaacttttttggtaaaatt 60338
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatt 425 ||||||||||| | |||| ||| |||||||| ||||||||||| Sbjct: 15771 cgaatacacattatttttttagcgccactattatctgctacatt 15814
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cagcaacaataacatcacca 342 |||||||||||||||||||| Sbjct: 42174 cagcaacaataacatcacca 42155
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 catttgaattctttacatgt 254 |||||||||||||||||||| Sbjct: 143582 catttgaattctttacatgt 143601
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acaatctactaatattaatt 49 |||||||||||||||||||| Sbjct: 34655 acaatctactaatattaatt 34674
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acaatctactaatattaatt 49 |||||||||||||||||||| Sbjct: 159381 acaatctactaatattaatt 159400
>gb|AE016754.1| Mus musculus chromosome 10 high-growth region, section 2 of 2 of the complete sequence Length = 303688 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 atgcaaaaggatgaaagaaatatt 502 ||||||||||| |||||||||||| Sbjct: 256147 atgcaaaaggaagaaagaaatatt 256124
>emb|BX511028.13| Zebrafish DNA sequence from clone DKEY-161N17 in linkage group 20, complete sequence Length = 225010 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 attaattctttgatctaaat 62 |||||||||||||||||||| Sbjct: 146084 attaattctttgatctaaat 146065
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 tattttgatttcaatttgttattt 476 ||||||| |||||||||||||||| Sbjct: 28243 tattttgttttcaatttgttattt 28266
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ttcctcggcaatcgcgccaa 151 |||||||||||||||||||| Sbjct: 4645443 ttcctcggcaatcgcgccaa 4645424
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ttcctcggcaatcgcgccaa 151 |||||||||||||||||||| Sbjct: 4620428 ttcctcggcaatcgcgccaa 4620409
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 attttggtaaaattcaattc 125 |||||||||||||||||||| Sbjct: 2952252 attttggtaaaattcaattc 2952271
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tctgctacatttaaaagggt 434 |||||||||||||||||||| Sbjct: 141843 tctgctacatttaaaagggt 141824
>gb|AC158600.17| Mus musculus 10 BAC RP24-211K19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165879 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tactagtatttataatactt 88 |||||||||||||||||||| Sbjct: 72121 tactagtatttataatactt 72140 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tactagtatttataatactt 88 |||||||||||||||||||| Sbjct: 19820 tactagtatttataatactt 19801
>emb|CR385050.10| Zebrafish DNA sequence from clone DKEY-22I16 in linkage group 1, complete sequence Length = 145760 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tattttgatttcaatttgtt 472 |||||||||||||||||||| Sbjct: 109311 tattttgatttcaatttgtt 109292
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 382 cgaatacacatcaattttcgagctccactattgtctgctacatt 425 ||||||||||| | ||| || ||||||||||| ||||| ||||| Sbjct: 84071 cgaatacacataattttacgggctccactattatctgcaacatt 84114 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 241 aattctttacatgtacgtacaattacagctcg 272 ||||||||||| || ||||| ||||||||||| Sbjct: 83933 aattctttacaagtgcgtactattacagctcg 83964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,760,472 Number of Sequences: 3902068 Number of extensions: 6760472 Number of successful extensions: 142322 Number of sequences better than 10.0: 238 Number of HSP's better than 10.0 without gapping: 253 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 139069 Number of HSP's gapped (non-prelim): 2946 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)