>RR30_SPIOL (P19954) Plastid-specific 30S ribosomal protein 1, chloroplast|
           precursor (CS-S5) (CS5) (S22) (Ribosomal protein 1)
           (PSRP-1)
          Length = 302

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 43/56 (76%), Positives = 51/56 (91%)
 Frame = -2

Query: 454 EMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQDGHVDK 287
           +M PLT+ EA+EQLENVDHDFYAFRNE+TG++NILYKRKEGG+GLIIPK DG  +K
Sbjct: 232 DMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEK 286

>LRTA_SYNY3 (P74518) Light repressed protein A homolog|
          Length = 191

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = -2

Query: 451 MAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQ 305
           M P+ +++ALEQL+ VDHDFY FRN+ T E+N++Y R  GG+G+I P Q
Sbjct: 141 MPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQPHQ 189

>LRTA_SYNP2 (P47908) Light repressed protein A|
          Length = 192

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = -2

Query: 451 MAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPK 308
           M P+T+D+ALEQL+ VDHDFY F N+ T  +N++Y R  GG+G+I P+
Sbjct: 141 MPPMTIDQALEQLQLVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPR 188

>UA82_DEIRA (Q9RVE7) Protein DR1082|
          Length = 191

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 35/46 (76%)
 Frame = -2

Query: 454 EMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 317
           E+ P++ ++A+ Q+E + HDFY F++ Q G+  ++Y+R++G +GLI
Sbjct: 144 ELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQTGVVYRRRDGHYGLI 188

>YVYD_BACSU (P28368) Hypothetical protein yvyD|
          Length = 189

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 17/49 (34%), Positives = 32/49 (65%)
 Frame = -2

Query: 451 MAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQ 305
           + P+  +EA+ Q+  + H+F+ F N +T   N++Y+R +G +GLI P +
Sbjct: 141 LKPMDSEEAILQMNMLGHNFFVFTNAETNLTNVVYRRNDGKYGLIEPTE 189

>YSEA_STACA (P47995) Hypothetical protein in secA 5'region (ORF1) (Fragment)|
          Length = 165

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 16/45 (35%), Positives = 31/45 (68%)
 Frame = -2

Query: 451 MAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 317
           + P+  +EA+ Q++ +  DF+ F + +T   +I+Y+RK+G +GLI
Sbjct: 111 LKPMDSEEAVLQMDLLGTDFFIFNDRETDGTSIVYRRKDGKYGLI 155

>RP5M_BRAJA (P30334) Probable sigma(54) modulation protein (ORF203)|
          Length = 203

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -2

Query: 442 LTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIP---KQDG 299
           L+V EA+ +L+        F++  +G VNI+Y+R +G  G + P   K DG
Sbjct: 149 LSVSEAVMELDLSGAPCLVFQHGSSGRVNIIYRRADGNVGWVDPPGGKADG 199

>RP5M_RHIME (P17265) Probable sigma(54) modulation protein|
          Length = 190

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 454 EMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 317
           ++  ++V  A+  L+  D     FR+    ++NI+Y+R +G  G I
Sbjct: 138 QLRTMSVANAVMALDMTDEPVLMFRSPGKDDLNIVYRRNDGNIGWI 183

>TRPG_CRYNE (Q5KC22) Anthranilate synthase component 2 (EC 4.1.3.27)|
           (Anthranilate synthase component II) [Includes:
           Glutamine amidotransferase; Indole-3-glycerol phosphate
           synthase (EC 4.1.1.48) (IGPS);
           N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3
          Length = 752

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = -2

Query: 415 LENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQDGHVDKATVNAKEHPVAG*PRPP 236
           L +V  + Y  RN++     I  K  EG F       DG +++  ++    P  G PR  
Sbjct: 21  LASVGGNPYVVRNDK-----ITLKEIEGMFS------DGELERIVIS----PGPGHPRTD 65

Query: 235 SITSCSCISWSVFSLMMVGVC 173
           S  S   I+W +  L ++GVC
Sbjct: 66  SGVSRDVIAWGMGKLPILGVC 86

>MUS81_XENTR (Q640B4) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 612

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
 Frame = -2

Query: 448 APLTVDEALEQLENVDHDFYAFRNEQTG---EVNILYKRKEGGFGLII--------PKQD 302
           +PL++  ALE  E    D    + ++TG   +   + +R+ GG+ +++        P   
Sbjct: 115 SPLSIPHALEPPEQESQDLSPSKKKKTGGKKQREYVPQRRSGGYAVLLTLYRDTKSPSSR 174

Query: 301 GHVDKATVNAKEHPV 257
           G++ KA +  +  P+
Sbjct: 175 GYMTKAELQKEAQPL 189

>TAB1_MOUSE (Q8CF89) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 1 (TGF-beta-activated kinase
           1-binding protein 1) (TAK1-binding protein 1)
          Length = 502

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 18  GRK*LI*LPFRAEKQLTNWYVGSS*VNTAQRASVNLHKEGAV*SDETPTLASQTPTIMRE 197
           GR   + +P+ + +  +   V  S V  +Q   VN     +   + TPTL +Q+PT+  +
Sbjct: 383 GRVYPVSVPYSSAQSTSKTSVTLSLVMPSQGQMVNGSHSASTLDEATPTLTNQSPTLTLQ 442

Query: 198 KTDQLMQ-LQLVIDGG--RGQPA 257
            T+   Q      DGG  R +PA
Sbjct: 443 STNTHTQSSSSSSDGGLFRSRPA 465


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,260,229
Number of Sequences: 219361
Number of extensions: 1038130
Number of successful extensions: 2796
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)