Clone Information

BLAST Search Result

Clone Name	rbasd3o19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY588275.1\| Zea mays putative inosine-uridine preferring nucl...	100	1e-17
2	ref\|XM_483754.1\| Oryza sativa (japonica cultivar-group), mRNA	82	2e-12
3	dbj\|AK065324.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
4	gb\|AY109712.1\| Zea mays CL31621_2 mRNA sequence	60	8e-06
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
6	dbj\|AP003928.3\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
7	emb\|CR759947.5\| Gorilla DNA sequence from clone CH255-315F17, co...	46	0.12
8	gb\|AC008746.10\| Homo sapiens chromosome 19 clone CTD-2587H19, co...	46	0.12
9	emb\|X07277.1\|GGNCAD Chicken mRNA for N-cadherin	44	0.49
10	gb\|AC012365.6\| Homo sapiens BAC clone RP11-459C22 from 2, comple...	44	0.49
11	gb\|AC175466.2\| Gallus gallus BAC clone CH261-8A20 from chromosom...	44	0.49
12	ref\|NM_001001615.1\| Gallus gallus cadherin 2, type 1, N-cadherin...	44	0.49
13	gb\|AC172242.3\| Gallus gallus BAC clone CH261-162M6 from chromoso...	42	1.9
14	gb\|AC123946.4\| Mus musculus BAC clone RP23-97L17 from chromosome...	42	1.9
15	gb\|AC091660.2\| Bos taurus clone RP42-354B6, complete sequence	42	1.9
16	emb\|AL513320.30\| Human DNA sequence from clone RP11-46F15 on chr...	42	1.9
17	gb\|AC164615.3\| Mus musculus BAC clone RP23-320N6 from chromosome...	42	1.9
18	gb\|AC090505.10\| Homo sapiens 3 BAC RP11-152D21 (Roswell Park Can...	42	1.9
19	gb\|AC079762.7\| Homo sapiens BAC clone RP11-150F12 from 2, comple...	42	1.9
20	gb\|AC079248.5\| Homo sapiens BAC clone RP11-24J11 from 2, complet...	42	1.9
21	emb\|AL808017.4\| Mouse DNA sequence from clone RP23-145G21 on chr...	42	1.9
22	gb\|AC137117.15\| Mus musculus chromosome 15, clone RP23-242E20, c...	40	7.6
23	gb\|CP000111.1\| Prochlorococcus marinus str. MIT 9312, complete g...	40	7.6
24	ref\|XM_640143.1\| Dictyostelium discoideum hypothetical protein (...	40	7.6
25	gb\|AC095018.2\| Drosophila melanogaster clone BACR24L18, complete...	40	7.6
26	ref\|XM_426559.1\| PREDICTED: Gallus gallus similar to transmembra...	40	7.6
27	gb\|AC183274.3\| Pan troglodytes BAC clone CH251-156F5 from chromo...	40	7.6
28	gb\|AC116963.2\| Dictyostelium discoideum chromosome 2 map 4657875...	40	7.6
29	gb\|AC134906.3\| Mus musculus BAC clone RP23-361K7 from chromosome...	40	7.6
30	gb\|AC121940.3\| Mus musculus BAC clone RP24-209B21 from chromosom...	40	7.6
31	gb\|AC142351.1\| Pan troglodytes BAC clone RP43-21J15 from 7, comp...	40	7.6
32	emb\|AL359257.9\| Human DNA sequence from clone RP11-226E21 on chr...	40	7.6
33	emb\|AL356583.28\| Human DNA sequence from clone RP11-690C23 on ch...	40	7.6
34	gb\|CP000083.1\| Colwellia psychrerythraea 34H, complete genome	40	7.6
35	emb\|BX510945.13\| Zebrafish DNA sequence from clone CH211-59D17 i...	40	7.6
36	gb\|AC036111.7\| Homo sapiens chromosome 2, clone RP11-738O11, com...	40	7.6
37	gb\|AC103949.6\| Homo sapiens chromosome 18, clone RP11-671P2, com...	40	7.6
38	emb\|BX510315.6\| Zebrafish DNA sequence from clone CH211-59I18 in...	40	7.6
39	gb\|AC026839.7\| Homo sapiens chromosome 5, clone RP11-186B13, com...	40	7.6
40	gb\|AC011586.9\| Homo sapiens, clone RP11-13N12, complete sequence	40	7.6
41	gb\|AF083031.2\|AF083031 Guillardia theta nucleomorph chromosome 3...	40	7.6
42	gb\|AC148298.3\| Pan troglodytes BAC clone CH251-136E8 from chromo...	40	7.6
43	gb\|AC048341.22\| Homo sapiens 12 BAC RP11-631N16 (Roswell Park Ca...	40	7.6
44	gb\|AC091636.1\|AC091636 Drosophila melanogaster, chromosome 3R, r...	40	7.6
45	gb\|AC007771.7\|AC007771 Drosophila melanogaster, chromosome 3R, r...	40	7.6
46	gb\|AC009501.4\| Homo sapiens BAC clone RP11-511I11 from 2, comple...	40	7.6
47	gb\|AC007684.3\| Homo sapiens BAC clone RP11-449G16 from 2, comple...	40	7.6
48	emb\|AL929240.18\| Mouse DNA sequence from clone RP23-245A10 on ch...	40	7.6
49	gb\|BC094158.1\| Xenopus laevis cDNA clone MGC:115288 IMAGE:686110...	40	7.6
50	gb\|CP000252.1\| Syntrophus aciditrophicus SB, complete genome	40	7.6
51	gb\|AC022077.20\| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Canc...	40	7.6
52	emb\|BX510368.7\| Zebrafish DNA sequence from clone DKEY-190P19 in...	40	7.6
53	emb\|AL954739.9\| Zebrafish DNA sequence from clone CH211-192K9 in...	40	7.6
54	emb\|AL772314.9\| Zebrafish DNA sequence from clone DKEY-89B17 in ...	40	7.6
55	gb\|AE003731.3\| Drosophila melanogaster chromosome 3R, section 69...	40	7.6
56	gb\|AE003715.4\| Drosophila melanogaster chromosome 3R, section 53...	40	7.6
57	gb\|AC148246.3\| Saimiri boliviensis boliviensis clone CH254-471K1...	40	7.6
58	emb\|AL929382.9\| Mouse DNA sequence from clone RP23-136C24 on chr...	40	7.6
59	gb\|U31961.1\|DMU31961 Drosophila melanogaster bithorax complex (B...	40	7.6
60	gb\|L07835.1\|DROABDB Drosophila melanogaster (clone DS07696) Abd-...	40	7.6

>gb|AY588275.1| Zea mays putative inosine-uridine preferring nucleoside hydrolase
            mRNA, complete cds
          Length = 1458

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                        
Query: 432  ctcagggtgccatcagcagcttctttacatatgcaaggacctttggcacattgactgtcc 491
            |||| |||||||| ||||||||||||| | |    | ||||||||||||||  || ||||
Sbjct: 1147 ctcatggtgccatgagcagcttctttataaagctgatgacctttggcacatcaaccgtcc 1088

                                                                        
Query: 492  atgcaactgaaattggtgcataacccgaccatggattttctgaattccactttttcaatc 551
            ||||||||||||| |||  ||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1087 atgcaactgaaatcggtttataccctgaccatgggttctctgaattccactttttcaatc 1028

                      
Query: 552  catgatccat 561
            | ||||||||
Sbjct: 1027 cctgatccat 1018

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>ref|XM_483754.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1516

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 473  tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 532
            ||||||||||  ||||||||||||||||| |||||    || || ||||||||||| |||
Sbjct: 1071 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 1012

                                         
Query: 533  gaattccactttttcaatccatgatccat 561
            |||||||||||||||||||| || |||||
Sbjct: 1011 gaattccactttttcaatccttggtccat 983

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>dbj|AK065324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P23, full
            insert sequence
          Length = 1517

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 473  tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 532
            ||||||||||  ||||||||||||||||| |||||    || || ||||||||||| |||
Sbjct: 1072 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 1013

                                         
Query: 533  gaattccactttttcaatccatgatccat 561
            |||||||||||||||||||| || |||||
Sbjct: 1012 gaattccactttttcaatccttggtccat 984

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>gb|AY109712.1| Zea mays CL31621_2 mRNA sequence
          Length = 877

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 90/110 (81%)
 Strand = Plus / Plus

                                                                       
Query: 432 ctcagggtgccatcagcagcttctttacatatgcaaggacctttggcacattgactgtcc 491
           |||| |||||||| ||||||||||||| | |    | |||||||| |||||  || ||||
Sbjct: 313 ctcatggtgccataagcagcttctttataaagctgatgacctttgccacatcaaccgtcc 372

                                                             
Query: 492 atgcaactgaaattggtgcataacccgaccatggattttctgaattccac 541
           ||||||||||||| |||  ||| || |||||||| || ||||||||||||
Sbjct: 373 atgcaactgaaatcggtttataccctgaccatgggttctctgaattccac 422

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 473      tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 532
                ||||||||||  ||||||||||||||||| |||||    || || ||||||||||| |||
Sbjct: 27916050 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 27916109

                         
Query: 533      gaattccac 541
                |||||||||
Sbjct: 27916110 gaattccac 27916118

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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1150_A11
          Length = 142010

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                          
Query: 473    tttggcacattgactgtccatgcaactgaaattggtgcataacccgaccatggattttct 532
              ||||||||||  ||||||||||||||||| |||||    || || ||||||||||| |||
Sbjct: 124128 tttggcacatcaactgtccatgcaactgagattggcttgtagccagaccatggattctct 124187

                       
Query: 533    gaattccac 541
              |||||||||
Sbjct: 124188 gaattccac 124196

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>emb|CR759947.5| Gorilla DNA sequence from clone CH255-315F17, complete sequence
          Length = 97153

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 522   atggattttctgaattccactttttca 548
             ||||| |||||||||||||||||||||
Sbjct: 39828 atggactttctgaattccactttttca 39802

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>gb|AC008746.10| Homo sapiens chromosome 19 clone CTD-2587H19, complete sequence
          Length = 200070

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 522    atggattttctgaattccactttttca 548
              ||||| |||||||||||||||||||||
Sbjct: 144209 atggactttctgaattccactttttca 144183

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>emb|X07277.1|GGNCAD Chicken mRNA for N-cadherin
          Length = 3203

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 344 aaaacagaaaaatatactttgg 365
           ||||||||||||||||||||||
Sbjct: 243 aaaacagaaaaatatactttgg 264

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>gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, complete sequence
          Length = 187848

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 221    atgtagttgtatatataaatgt 242
              ||||||||||||||||||||||
Sbjct: 117162 atgtagttgtatatataaatgt 117183

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>gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosome ul, complete sequence
          Length = 233533

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 344    aaaacagaaaaatatactttgg 365
              ||||||||||||||||||||||
Sbjct: 175808 aaaacagaaaaatatactttgg 175787

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>ref|NM_001001615.1| Gallus gallus cadherin 2, type 1, N-cadherin (neuronal) (CDH2),
           mRNA
          Length = 3203

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 344 aaaacagaaaaatatactttgg 365
           ||||||||||||||||||||||
Sbjct: 243 aaaacagaaaaatatactttgg 264

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>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence
          Length = 252782

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 526    attttctgaattccacttttt 546
              |||||||||||||||||||||
Sbjct: 191830 attttctgaattccacttttt 191810

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>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    ttttttccaaatttgaaatgt 224
              |||||||||||||||||||||
Sbjct: 149918 ttttttccaaatttgaaatgt 149898

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>gb|AC091660.2| Bos taurus clone RP42-354B6, complete sequence
          Length = 173068

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 205    tttttccaaatttgaaatgta 225
              |||||||||||||||||||||
Sbjct: 136262 tttttccaaatttgaaatgta 136242

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>emb|AL513320.30| Human DNA sequence from clone RP11-46F15 on chromosome 1 Contains the
             5' end of the EGFL3 gene for EGF-like-domain multiple 3, a
             novel gene, the gene for a novel protein (FLJ39108,
             FLJ21756 and FLJ21811), the 3' end of the WDR8 gene for WD
             repeat domain 8 and five CpG islands, complete sequence
          Length = 130141

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 521   catggattttctgaattccactttt 545
             |||||||| ||||||||||||||||
Sbjct: 88235 catggattctctgaattccactttt 88211

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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   ttttttccaaatttgaaatgt 224
             |||||||||||||||||||||
Sbjct: 45112 ttttttccaaatttgaaatgt 45092

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>gb|AC090505.10| Homo sapiens 3 BAC RP11-152D21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86560

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   ttttccaaatttgaaatgtag 226
             |||||||||||||||||||||
Sbjct: 80762 ttttccaaatttgaaatgtag 80742

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>gb|AC079762.7| Homo sapiens BAC clone RP11-150F12 from 2, complete sequence
          Length = 163408

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 334    cttgcttctaaaaacagaaaa 354
              |||||||||||||||||||||
Sbjct: 137100 cttgcttctaaaaacagaaaa 137120

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>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence
          Length = 128535

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 130   tcttttctcatttgtctaaacatgt 154
             ||||||||| |||||||||||||||
Sbjct: 25554 tcttttctcctttgtctaaacatgt 25530

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>emb|AL808017.4| Mouse DNA sequence from clone RP23-145G21 on chromosome X, complete
              sequence
          Length = 183291

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    gctgtcacaatgctgtctgtc 274
              |||||||||||||||||||||
Sbjct: 145223 gctgtcacaatgctgtctgtc 145243

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>gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, complete sequence
          Length = 202147

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   aaaacagaaaaatatacttt 363
             ||||||||||||||||||||
Sbjct: 80023 aaaacagaaaaatatacttt 80004

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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    tgcagaatttacccccattg 297
              ||||||||||||||||||||
Sbjct: 449776 tgcagaatttacccccattg 449757

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>ref|XM_640143.1| Dictyostelium discoideum hypothetical protein (DDB0216999), partial
            mRNA
          Length = 7347

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  taaatgtttggaatcaatgc 255
            ||||||||||||||||||||
Sbjct: 6980 taaatgtttggaatcaatgc 6999

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>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence
          Length = 163116

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   aaaaacagaaaaatatactt 362
             ||||||||||||||||||||
Sbjct: 12756 aaaaacagaaaaatatactt 12775

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>ref|XM_426559.1| PREDICTED: Gallus gallus similar to transmembrane protein with
            EGF-like and two follistatin-like domains 2 (LOC429002),
            mRNA
          Length = 4818

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 260  acaatgctgtctgtcatgtgcaga 283
            |||||||| |||||||||||||||
Sbjct: 3904 acaatgctatctgtcatgtgcaga 3927

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>gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromosome 7, complete
              sequence
          Length = 163934

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    tttgaaatgtagttgtatat 234
              ||||||||||||||||||||
Sbjct: 157798 tttgaaatgtagttgtatat 157779

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>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
             complete sequence
          Length = 257109

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   taaatgtttggaatcaatgc 255
             ||||||||||||||||||||
Sbjct: 38997 taaatgtttggaatcaatgc 39016

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>gb|AC134906.3| Mus musculus BAC clone RP23-361K7 from chromosome 19, complete sequence
          Length = 192484

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tctgtcatgtgcagaattta 288
             ||||||||||||||||||||
Sbjct: 24277 tctgtcatgtgcagaattta 24258

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>gb|AC121940.3| Mus musculus BAC clone RP24-209B21 from chromosome 19, complete sequence
          Length = 203390

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    tctgtcatgtgcagaattta 288
              ||||||||||||||||||||
Sbjct: 113091 tctgtcatgtgcagaattta 113072

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>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence
          Length = 159635

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 336   tgcttctaaaaacagaaaaatata 359
             |||||||||||||||||| |||||
Sbjct: 14073 tgcttctaaaaacagaaatatata 14096

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>emb|AL359257.9| Human DNA sequence from clone RP11-226E21 on chromosome 13 Contains
             part of a novel gene (KIAA0916)amd two novel genes,
             complete sequence
          Length = 97477

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ttgtatatataaatgtttgg 246
             ||||||||||||||||||||
Sbjct: 75204 ttgtatatataaatgtttgg 75185

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>emb|AL356583.28| Human DNA sequence from clone RP11-690C23 on chromosome 1 Contains the 5'
              end of the SMYD3 gene for SET and MYND domain containing 3,
              an ubiquitin specific protease 6 (Tre-2 oncogene) (USP6)
              pseudogene, a novel gene, a pseudogene similar to part of
              tumor necrosis factor receptor superfamily member 13B
              (TNFRSF13B), a pseudogene similar to part of
              carboxypeptidase D (CPD), the TFB2M gene for mitochondrial
              transcription factor B2, the 5' end of the gene for a novel
              protein (FLJ32001, DKFZp451A152, DKFZp451B077, FLJ00215)
              and two CpG islands, complete sequence
          Length = 207486

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ttttccaaatttgaaatgta 225
              ||||||||||||||||||||
Sbjct: 178110 ttttccaaatttgaaatgta 178129

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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     tatgcttgcttctaaaaaca 349
               ||||||||||||||||||||
Sbjct: 1777862 tatgcttgcttctaaaaaca 1777843

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>emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 in linkage group 21,
             complete sequence
          Length = 202152

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tatatataaatgtttggaat 249
             ||||||||||||||||||||
Sbjct: 84106 tatatataaatgtttggaat 84125

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>gb|AC036111.7| Homo sapiens chromosome 2, clone RP11-738O11, complete sequence
          Length = 184570

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    aatttgaaatgtagttgtat 232
              ||||||||||||||||||||
Sbjct: 150391 aatttgaaatgtagttgtat 150372

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>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence
          Length = 177301

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 336   tgcttctaaaaacagaaaaatata 359
             |||||||||||||||||| |||||
Sbjct: 27244 tgcttctaaaaacagaaatatata 27267

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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
              complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    tcacaatgctgtctgtcatg 277
              ||||||||||||||||||||
Sbjct: 121065 tcacaatgctgtctgtcatg 121084

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>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence
          Length = 156721

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 336    tgcttctaaaaacagaaaaatata 359
              |||||||||||||||||| |||||
Sbjct: 115300 tgcttctaaaaacagaaatatata 115277

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>gb|AC011586.9| Homo sapiens, clone RP11-13N12, complete sequence
          Length = 167475

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    cttctaaaaacagaaaaata 357
              ||||||||||||||||||||
Sbjct: 138966 cttctaaaaacagaaaaata 138947

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>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   ttctaaaaacagaaaaatat 358
             ||||||||||||||||||||
Sbjct: 35042 ttctaaaaacagaaaaatat 35061

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>gb|AC148298.3| Pan troglodytes BAC clone CH251-136E8 from chromosome 7, complete
              sequence
          Length = 168496

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    tttgaaatgtagttgtatat 234
              ||||||||||||||||||||
Sbjct: 109278 tttgaaatgtagttgtatat 109297

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>gb|AC048341.22| Homo sapiens 12 BAC RP11-631N16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 67400

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  aaaacagaaaaatatacttt 363
            ||||||||||||||||||||
Sbjct: 7910 aaaacagaaaaatatacttt 7891

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>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone
             BACR03M20, complete sequence
          Length = 175335

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   aaaaacagaaaaatatactt 362
             ||||||||||||||||||||
Sbjct: 49729 aaaaacagaaaaatatactt 49710

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>gb|AC007771.7|AC007771 Drosophila melanogaster, chromosome 3R, region 92E-92F, BAC clone
              BACR26M03, complete sequence
          Length = 197071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    tgtatatataaatgtttgga 247
              ||||||||||||||||||||
Sbjct: 107803 tgtatatataaatgtttgga 107822

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>gb|AC009501.4| Homo sapiens BAC clone RP11-511I11 from 2, complete sequence
          Length = 157173

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 323    ttcctcctatgcttgcttctaaaa 346
              |||||||||||||| |||||||||
Sbjct: 151564 ttcctcctatgctttcttctaaaa 151587

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>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence
          Length = 196848

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    aactgaaattggtgcataac 515
              ||||||||||||||||||||
Sbjct: 135335 aactgaaattggtgcataac 135354

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>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete
              sequence
          Length = 180092

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 531    ctgaattccactttttcaat 550
              ||||||||||||||||||||
Sbjct: 175632 ctgaattccactttttcaat 175651

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>gb|BC094158.1| Xenopus laevis cDNA clone MGC:115288 IMAGE:6861103, complete cds
          Length = 4580

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  ttctcagggtgccatcagca 449
            ||||||||||||||||||||
Sbjct: 2650 ttctcagggtgccatcagca 2669

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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 516     ccgaccatggattttctgaa 535
               ||||||||||||||||||||
Sbjct: 2055750 ccgaccatggattttctgaa 2055769

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>gb|AC022077.20| Homo sapiens 3 BAC RP11-34I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158176

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   ttacatatgcaaggaccttt 475
             ||||||||||||||||||||
Sbjct: 97439 ttacatatgcaaggaccttt 97420

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>emb|BX510368.7| Zebrafish DNA sequence from clone DKEY-190P19 in linkage group 20,
             complete sequence
          Length = 84687

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 219   aaatgtagttgtatatataaatgt 242
             |||||||||||||||| |||||||
Sbjct: 79248 aaatgtagttgtatatttaaatgt 79225

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>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20,
             complete sequence
          Length = 154604

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   aaatgtagttgtatatataaatgt 242
             |||||||||||||||| |||||||
Sbjct: 66333 aaatgtagttgtatatttaaatgt 66356

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>emb|AL772314.9| Zebrafish DNA sequence from clone DKEY-89B17 in linkage group 19,
             complete sequence
          Length = 185640

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   ggaagttttttccaaatttg 218
             ||||||||||||||||||||
Sbjct: 98670 ggaagttttttccaaatttg 98689

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>gb|AE003731.3| Drosophila melanogaster chromosome 3R, section 69 of 118 of the complete
              sequence
          Length = 230001

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    tgtatatataaatgtttgga 247
              ||||||||||||||||||||
Sbjct: 174018 tgtatatataaatgtttgga 174037

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>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the complete
              sequence
          Length = 228547

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    aaaaacagaaaaatatactt 362
              ||||||||||||||||||||
Sbjct: 144938 aaaaacagaaaaatatactt 144919

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>gb|AC148246.3| Saimiri boliviensis boliviensis clone CH254-471K13, complete sequence
          Length = 177755

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 336   tgcttctaaaaacagaaaaatata 359
             ||||||||||||| ||||||||||
Sbjct: 95895 tgcttctaaaaacggaaaaatata 95918

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>emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chromosome X, complete
             sequence
          Length = 201060

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   ttgcttctaaaaacagaaaa 354
             ||||||||||||||||||||
Sbjct: 35139 ttgcttctaaaaacagaaaa 35158

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>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence
          Length = 338234

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   aaaaacagaaaaatatactt 362
             ||||||||||||||||||||
Sbjct: 38780 aaaaacagaaaaatatactt 38799

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>gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-B gene
          Length = 80423

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   aaaaacagaaaaatatactt 362
             ||||||||||||||||||||
Sbjct: 38780 aaaaacagaaaaatatactt 38799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,545,444
Number of Sequences: 3902068
Number of extensions: 6545444
Number of successful extensions: 137231
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137017
Number of HSP's gapped (non-prelim): 210
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result