ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3o14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111407.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E09, full insert sequence Length = 1517 Score = 505 bits (255), Expect = e-140 Identities = 387/431 (89%) Strand = Plus / Minus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 249 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 778 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 719 Query: 250 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 309 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 718 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 659 Query: 310 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 369 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 658 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 599 Query: 370 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 429 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 598 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 539 Query: 430 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 489 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 538 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 479 Query: 490 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 549 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 478 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 419 Query: 550 atgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatccc 609 ||||||||||||||||||||||| || || || || || ||||| |||| || || ||| Sbjct: 418 atgctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaaccc 359 Query: 610 ttccatatgat 620 ||||||||||| Sbjct: 358 ttccatatgat 348
>dbj|AK106215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H01, full insert sequence Length = 1063 Score = 505 bits (255), Expect = e-140 Identities = 387/431 (89%) Strand = Plus / Minus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 249 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 767 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 708 Query: 250 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 309 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 707 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 648 Query: 310 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 369 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 647 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 588 Query: 370 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 429 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 587 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 528 Query: 430 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 489 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 527 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 468 Query: 490 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 549 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 467 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 408 Query: 550 atgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatccc 609 ||||||||||||||||||||||| || || || || || ||||| |||| || || ||| Sbjct: 407 atgctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaaccc 348 Query: 610 ttccatatgat 620 ||||||||||| Sbjct: 347 ttccatatgat 337
>dbj|AK102635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099N11, full insert sequence Length = 1065 Score = 505 bits (255), Expect = e-140 Identities = 387/431 (89%) Strand = Plus / Minus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 249 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 769 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 710 Query: 250 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 309 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 709 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 650 Query: 310 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 369 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 649 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 590 Query: 370 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 429 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 589 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 530 Query: 430 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 489 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 529 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 470 Query: 490 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 549 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 469 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 410 Query: 550 atgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatccc 609 ||||||||||||||||||||||| || || || || || ||||| |||| || || ||| Sbjct: 409 atgctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaaccc 350 Query: 610 ttccatatgat 620 ||||||||||| Sbjct: 349 ttccatatgat 339
>dbj|AK058911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G10, full insert sequence Length = 1083 Score = 505 bits (255), Expect = e-140 Identities = 387/431 (89%) Strand = Plus / Minus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 249 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 800 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 741 Query: 250 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 309 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 740 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 681 Query: 310 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 369 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 680 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 621 Query: 370 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 429 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 620 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 561 Query: 430 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 489 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 560 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 501 Query: 490 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 549 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 500 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 441 Query: 550 atgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatccc 609 ||||||||||||||||||||||| || || || || || ||||| |||| || || ||| Sbjct: 440 atgctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaaccc 381 Query: 610 ttccatatgat 620 ||||||||||| Sbjct: 380 ttccatatgat 370
>dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085B09, full insert sequence Length = 1035 Score = 498 bits (251), Expect = e-137 Identities = 392/439 (89%) Strand = Plus / Minus Query: 182 actctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcg 241 ||||||||||||| |||||||||| |||||| ||||| || || |||||||| |||| | Sbjct: 632 actctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtactttataaatg 573 Query: 242 gcttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtc 301 | ||||||||||| | || ||||||||||| |||||||| ||| ||||||||||||||| Sbjct: 572 gtttctcagtcatgatgattgtaacccacccgacatatggaagaaagcctacagcccgtc 513 Query: 302 ccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccc 361 ||||||||||||| | ||||||||||||||||| |||||||| | ||| ||||| |||| Sbjct: 512 ccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcgtccc 453 Query: 362 caaaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaa 421 ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | Sbjct: 452 caaaattattatcacctttcgtgaggatatcaacttcagcactttcctcgcgttcatgga 393 Query: 422 ccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactattt 481 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct: 392 ccttaatcacacggtgaacaattggaatttcacggccatcaatgttgaaaacaactatct 333 Query: 482 ctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatc 541 |||| |||||||||||||||| ||||||||| | ||| || ||||| ||||||||||||| Sbjct: 332 ctcctgtgcggataggatctttgctcatgtgtagaaaaaggatatcgccccttttaaatc 273 Query: 542 caggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaacca 601 |||||||||||||||||||||| ||||| || || || ||||||||||| || ||||||| Sbjct: 272 caggctccatgctaccagaaaggaccacaaccactggggactcgctccccgttgcaacca 213 Query: 602 tcaatcccttccatatgat 620 ||||||||||||||||||| Sbjct: 212 tcaatcccttccatatgat 194
>gb|AY103758.1| Zea mays PCO086041 mRNA sequence Length = 1028 Score = 414 bits (209), Expect = e-112 Identities = 380/437 (86%) Strand = Plus / Minus Query: 184 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 243 |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||| || Sbjct: 687 tctttcgacgttatgaccagcaagcccagtgcaccaatcagcaggtacttaataaatggt 628 Query: 244 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 303 ||||||||||| | ||| |||| ||| ||||||||||| || ||||| || || |||||| Sbjct: 627 ttctcagtcatgataattgtaatccagccaacatatggaaggtagcccaccgcacgtccc 568 Query: 304 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 363 ||||||||||| | ||| |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 567 ataatgtgatgttgctggagccaaagctgcccatgtgcatataatagtcggtcatcccca 508 Query: 364 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 423 |||||||| |||||||| |||||||| || |||||| || | || || |||||||| ||| Sbjct: 507 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 448 Query: 424 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 483 |||||||| ||||||||||||||||| ||||| ||||| | ||| ||||||||||||||| Sbjct: 447 ttaatcactcggtgaacaattggaatctcacgaccatcgacattgaaaacaactatttct 388 Query: 484 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 543 || ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||| Sbjct: 387 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 328 Query: 544 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 603 |||||||||||||| || || ||||| ||||| || ||||||||||| || ||| ||| Sbjct: 327 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 268 Query: 604 aatcccttccatatgat 620 || |||||||||||||| Sbjct: 267 aaacccttccatatgat 251
>gb|BT018041.1| Zea mays clone EL01N0531A03.c mRNA sequence Length = 869 Score = 398 bits (201), Expect = e-108 Identities = 378/437 (86%) Strand = Plus / Minus Query: 184 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 243 |||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| || Sbjct: 654 tctttcgacgttatgaccagcaaacccagtgcgccaatcagcaggtacttaataaatggt 595 Query: 244 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 303 ||||||||||| | ||| |||||||| ||||||||||| || ||||| || || |||||| Sbjct: 594 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 535 Query: 304 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 363 |||||||| || | ||| ||||||||||| || |||||||| || ||||||||||||||| Sbjct: 534 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 475 Query: 364 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 423 |||||||| |||||||| |||||||| || |||||| || | || || |||||||| ||| Sbjct: 474 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 415 Query: 424 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 483 |||||||| ||||||||||||||||| ||||| ||||| | ||| ||||||||||||||| Sbjct: 414 ttaatcactcggtgaacaattggaatctcacgaccatcgacattgaaaacaactatttct 355 Query: 484 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 543 || ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||| Sbjct: 354 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 295 Query: 544 ggctccatgctaccagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatc 603 |||||||||||||| || || ||||| ||||| || ||||||||||| | ||| ||| Sbjct: 294 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgcgaaaactatc 235 Query: 604 aatcccttccatatgat 620 || |||||||||||||| Sbjct: 234 aaacccttccatatgat 218
>ref|NM_185778.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 651 Score = 297 bits (150), Expect = 2e-77 Identities = 222/246 (90%) Strand = Plus / Minus Query: 375 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacg 434 |||||| |||||||| ||||||||| |||| || ||||||||||||||||| |||||||| Sbjct: 402 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcacacg 343 Query: 435 gtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggat 494 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 342 gtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcggat 283 Query: 495 aggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgct 554 ||| |||| |||||||||||||||||| || ||||| |||||||||||||| |||||||| Sbjct: 282 agggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatgct 223 Query: 555 accagaaagaaccaccacaaccggcgactcgctccctgtcgcaaccatcaatcccttcca 614 |||||||||||||||||| || || || || || ||||| |||| || || |||||||| Sbjct: 222 accagaaagaaccaccaccactggagattcactacctgttacaactattaaacccttcca 163 Query: 615 tatgat 620 |||||| Sbjct: 162 tatgat 157 Score = 214 bits (108), Expect = 3e-52 Identities = 168/188 (89%) Strand = Plus / Minus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 249 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 641 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 582 Query: 250 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 309 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 581 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 522 Query: 310 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 369 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 521 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 462 Query: 370 ttatcacc 377 |||||||| Sbjct: 461 ttatcacc 454
>dbj|AK099911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D13, full insert sequence Length = 1489 Score = 161 bits (81), Expect = 3e-36 Identities = 311/387 (80%), Gaps = 3/387 (0%) Strand = Plus / Minus Query: 231 cttaataatcggcttctcagtcatcacaatagtaacccacccaacatatggtagatagcc 290 |||||||| || |||||||||||||| | || ||||||||| | | |||||||| || Sbjct: 559 cttaataactggtttctcagtcatcaccaatgtcacccacccagctttgggtagataccc 500 Query: 291 tacagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaag 350 || ||||||||||| |||||||| | |||||||||||||||||| |||| || | || Sbjct: 499 tatggcccgtcccatgatgtgatgttgctgaagccaaagctgcccatgtgtgtaaagaat 440 Query: 351 tcggtcatccccaaaattattatcacctttcgtgaggatatcaacttctccactttcttg 410 |||||| ||| | ||| || |||||||| ||||||| |||||||| | || | || | Sbjct: 439 tcggtcgtccataggattgttgtcaccttttgtgaggaaatcaacttgtgcattatcccg 380 Query: 411 gcgttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaa 470 ||||| ||||||| ||| || || || || ||||||||||||||||||||| || || Sbjct: 379 tcgttcgtgaacctcaataacgcgatggacgattggaatttcacggccatca---ttgaa 323 Query: 471 aacaactatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcacc 530 ||||||||| ||||| || || ||||| | || |||||| ||||||||||| ||||| || Sbjct: 322 aacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatcccc 263 Query: 531 ccttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctccc 590 ||||| ||||||| || ||||||| |||| |||||||| || | |||||||| ||||| Sbjct: 262 cctttcaaatccaagccccatgctttcagatagaaccacaactagtggcgactcactccc 203 Query: 591 tgtcgcaaccatcaatcccttccatat 617 |||| | ||||||||||||||||| Sbjct: 202 tgtcatgataatcaatcccttccatat 176
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0082F22, complete sequence Length = 176038 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 530 cccttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctcc 589 |||||||||||||||||||||||||||||||||| ||||| || || || |||||||||| Sbjct: 112594 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 112535 Query: 590 ctgtcgcaaccatcaatcccttccatatgat 620 | || |||||||||||||||||||||||||| Sbjct: 112534 ccgttgcaaccatcaatcccttccatatgat 112504 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 289 cctacagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaa 348 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||| | | Sbjct: 114605 cctacagcccgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaaga 114546 Query: 349 agtcggtcatccccaaaattattatcacct 378 || ||||| ||||||||||||||||||||| Sbjct: 114545 agacggtcgtccccaaaattattatcacct 114516 Score = 75.8 bits (38), Expect = 2e-10 Identities = 38/38 (100%) Strand = Plus / Minus Query: 421 accttaatcacacggtgaacaattggaatttcacggcc 458 |||||||||||||||||||||||||||||||||||||| Sbjct: 114211 accttaatcacacggtgaacaattggaatttcacggcc 114174 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 458 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtg 512 ||||||| || ||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct: 114036 catcaatgttgaaaacaactatctctcctgtgcggataggatctttgctcatgtg 113982 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 375 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 424 |||||||||||||||||||||||| ||||||| | ||||||||| |||| Sbjct: 114376 acctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacct 114327 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 182 actctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtact 232 ||||||||||||| |||||||||| |||||| ||||| || || ||||||| Sbjct: 115056 actctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 115006
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 530 cccttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctcc 589 |||||||||||||||||||||||||||||||||| ||||| || || || |||||||||| Sbjct: 13149817 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 13149758 Query: 590 ctgtcgcaaccatcaatcccttccatatgat 620 | || |||||||||||||||||||||||||| Sbjct: 13149757 ccgttgcaaccatcaatcccttccatatgat 13149727 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 289 cctacagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaa 348 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||| | | Sbjct: 13151828 cctacagcccgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaaga 13151769 Query: 349 agtcggtcatccccaaaattattatcacct 378 || ||||| ||||||||||||||||||||| Sbjct: 13151768 agacggtcgtccccaaaattattatcacct 13151739 Score = 75.8 bits (38), Expect = 2e-10 Identities = 38/38 (100%) Strand = Plus / Minus Query: 421 accttaatcacacggtgaacaattggaatttcacggcc 458 |||||||||||||||||||||||||||||||||||||| Sbjct: 13151434 accttaatcacacggtgaacaattggaatttcacggcc 13151397 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 458 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtg 512 ||||||| || ||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct: 13151259 catcaatgttgaaaacaactatctctcctgtgcggataggatctttgctcatgtg 13151205 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 375 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 424 |||||||||||||||||||||||| ||||||| | ||||||||| |||| Sbjct: 13151599 acctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacct 13151550 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 182 actctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtact 232 ||||||||||||| |||||||||| |||||| ||||| || || ||||||| Sbjct: 13152279 actctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 13152229
>ref|NM_104138.2| Arabidopsis thaliana peptidase AT1G52600 mRNA, complete cds Length = 818 Score = 121 bits (61), Expect = 3e-24 Identities = 217/269 (80%) Strand = Plus / Minus Query: 319 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 378 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 491 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 432 Query: 379 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 438 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 431 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 372 Query: 439 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 498 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 371 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 312 Query: 499 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctacca 558 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| ||| Sbjct: 311 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgcttcca 252 Query: 559 gaaagaaccaccacaaccggcgactcgct 587 || ||||| ||||| ||||| || ||||| Sbjct: 251 gagagaacaaccaccaccggagattcgct 223
>gb|AY096703.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600) mRNA, complete cds Length = 574 Score = 121 bits (61), Expect = 3e-24 Identities = 217/269 (80%) Strand = Plus / Minus Query: 319 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 378 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 404 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 345 Query: 379 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 438 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 344 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 285 Query: 439 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 498 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 284 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 225 Query: 499 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctacca 558 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| ||| Sbjct: 224 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgcttcca 165 Query: 559 gaaagaaccaccacaaccggcgactcgct 587 || ||||| ||||| ||||| || ||||| Sbjct: 164 gagagaacaaccaccaccggagattcgct 136
>gb|AY064032.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600) mRNA, complete cds Length = 825 Score = 121 bits (61), Expect = 3e-24 Identities = 217/269 (80%) Strand = Plus / Minus Query: 319 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 378 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 490 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 431 Query: 379 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 438 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 430 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 371 Query: 439 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 498 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 370 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 311 Query: 499 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctacca 558 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| ||| Sbjct: 310 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgcttcca 251 Query: 559 gaaagaaccaccacaaccggcgactcgct 587 || ||||| ||||| ||||| || ||||| Sbjct: 250 gagagaacaaccaccaccggagattcgct 222
>gb|AY084305.1| Arabidopsis thaliana clone 103157 mRNA, complete sequence Length = 691 Score = 121 bits (61), Expect = 3e-24 Identities = 217/269 (80%) Strand = Plus / Minus Query: 319 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 378 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 490 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 431 Query: 379 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 438 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 430 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 371 Query: 439 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 498 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 370 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 311 Query: 499 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctacca 558 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| ||| Sbjct: 310 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgcttcca 251 Query: 559 gaaagaaccaccacaaccggcgactcgct 587 || ||||| ||||| ||||| || ||||| Sbjct: 250 gagagaacaaccaccaccggagattcgct 222
>dbj|AK220581.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-87-D04 Length = 783 Score = 113 bits (57), Expect = 7e-22 Identities = 216/269 (80%) Strand = Plus / Minus Query: 319 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 378 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 490 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 431 Query: 379 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 438 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 430 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 371 Query: 439 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 498 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || | || Sbjct: 370 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaaccggg 311 Query: 499 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgctacca 558 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| ||| Sbjct: 310 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgcttcca 251 Query: 559 gaaagaaccaccacaaccggcgactcgct 587 || ||||| ||||| ||||| || ||||| Sbjct: 250 gagagaacaaccaccaccggagattcgct 222
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 292 acagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagt 351 ||||| || |||||||| ||||| | |||||||||||||||||| |||||||||| |||| Sbjct: 9268923 acagctcgccccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagt 9268982 Query: 352 cggtcatccccaaaattattatcacct 378 ||||||||||||||||| ||||||||| Sbjct: 9268983 cggtcatccccaaaattgttatcacct 9269009 Score = 107 bits (54), Expect = 4e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 458 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaa 517 |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 9269437 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 9269496 Query: 518 acagaatatcaccc 531 |||| || |||||| Sbjct: 9269497 acaggatgtcaccc 9269510 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 532 cttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctccct 591 |||||||||||||| |||||||||||||||||||||||||| || || || || || ||| Sbjct: 9269947 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 9270006 Query: 592 gtcgcaaccatcaatcccttccatatgat 620 || |||| || || |||||||||||||| Sbjct: 9270007 gttacaactattaaacccttccatatgat 9270035 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 421 accttaatcacacggtgaacaattggaatttcacggcc 458 ||||| |||||||||||||||||||||||||||||||| Sbjct: 9269302 accttgatcacacggtgaacaattggaatttcacggcc 9269339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 231 cttaataatcggcttctcagtcatcacaatagtaacccacccaacatatgg 281 ||||||||| |||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 9268771 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 9268821 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtact 232 |||||||| ||||| |||||||||||||| ||||||||||||| Sbjct: 9268517 gatgttataaccagtaggcccagcgcgccgatcagaaggtact 9268559 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 375 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 424 |||||| |||||||| ||||||||| |||| || |||||||||||||||| Sbjct: 9269160 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 9269209
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0676F10 Length = 142510 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 292 acagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagt 351 ||||| || |||||||| ||||| | |||||||||||||||||| |||||||||| |||| Sbjct: 36264 acagctcgccccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagt 36323 Query: 352 cggtcatccccaaaattattatcacct 378 ||||||||||||||||| ||||||||| Sbjct: 36324 cggtcatccccaaaattgttatcacct 36350 Score = 107 bits (54), Expect = 4e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 458 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaa 517 |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 36778 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 36837 Query: 518 acagaatatcaccc 531 |||| || |||||| Sbjct: 36838 acaggatgtcaccc 36851 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 532 cttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctccct 591 |||||||||||||| |||||||||||||||||||||||||| || || || || || ||| Sbjct: 37288 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 37347 Query: 592 gtcgcaaccatcaatcccttccatatgat 620 || |||| || || |||||||||||||| Sbjct: 37348 gttacaactattaaacccttccatatgat 37376 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 421 accttaatcacacggtgaacaattggaatttcacggcc 458 ||||| |||||||||||||||||||||||||||||||| Sbjct: 36643 accttgatcacacggtgaacaattggaatttcacggcc 36680 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 231 cttaataatcggcttctcagtcatcacaatagtaacccacccaacatatgg 281 ||||||||| |||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 36112 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 36162 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 190 gatgttatgaccagcaggcccagcgcgccaatcagaaggtact 232 |||||||| ||||| |||||||||||||| ||||||||||||| Sbjct: 35858 gatgttataaccagtaggcccagcgcgccgatcagaaggtact 35900 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 375 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 424 |||||| |||||||| ||||||||| |||| || |||||||||||||||| Sbjct: 36501 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 36550
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 295 gcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtg 340 ||||||||||| |||||||| | |||||||||||||||||| |||| Sbjct: 35595331 gcccgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 35595376 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Plus Query: 530 cccttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctcc 589 |||||| ||||||| |||||||||| |||| |||||||| || | |||||||| |||| Sbjct: 35596152 ccctttcaaatccaagctccatgctttcagatagaaccacaactagtggcgactcactcc 35596211 Query: 590 ctgtcgcaaccatcaatcccttccatat 617 ||||| | ||||||||||||||||| Sbjct: 35596212 ctgtcatgataatcaatcccttccatat 35596239 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 469 aaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatc 527 ||||||||||| ||||| || || ||||| | || |||||| ||||||||||| ||||| Sbjct: 35595952 aaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatc 35596010
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 295 gcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtg 340 ||||||||||| |||||||| | |||||||||||||||||| |||| Sbjct: 111723 gcccgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 111768 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Plus Query: 530 cccttttaaatccaggctccatgctaccagaaagaaccaccacaaccggcgactcgctcc 589 |||||| ||||||| |||||||||| |||| |||||||| || | |||||||| |||| Sbjct: 112544 ccctttcaaatccaagctccatgctttcagatagaaccacaactagtggcgactcactcc 112603 Query: 590 ctgtcgcaaccatcaatcccttccatat 617 ||||| | ||||||||||||||||| Sbjct: 112604 ctgtcatgataatcaatcccttccatat 112631 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 469 aaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatc 527 ||||||||||| ||||| || || ||||| | || |||||| ||||||||||| ||||| Sbjct: 112344 aaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatc 112402
>gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence Length = 117737 Score = 48.1 bits (24), Expect = 0.035 Identities = 51/60 (85%) Strand = Plus / Plus Query: 319 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 378 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 53660 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 53719
>ref|XM_512154.1| PREDICTED: Pan troglodytes similar to microsomal signal peptidase subunit (LOC455447), mRNA Length = 451 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 437 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 378 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 377 aactatttcaccag 364
>ref|NM_033280.1| Homo sapiens SEC11-like 3 (S. cerevisiae) (SEC11L3), mRNA Length = 794 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 402 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 343 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 342 aactatttcaccag 329
>emb|CR858452.1| Pongo pygmaeus mRNA; cDNA DKFZp469M0613 (from clone DKFZp469M0613) Length = 864 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 392 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 333 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 332 aactatttcaccag 319
>gb|AC099842.2| Homo sapiens chromosome 11, clone RP11-747E23, complete sequence Length = 159274 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 ttctgaagccaaagctgccctt 337 |||||||||||||||||||||| Sbjct: 151854 ttctgaagccaaagctgccctt 151875
>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence Length = 160748 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 103644 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 103585 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 103584 aactatttcaccag 103571
>gb|AC100768.2| Homo sapiens chromosome 11, clone RP11-945A11, complete sequence Length = 190183 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 ttctgaagccaaagctgccctt 337 |||||||||||||||||||||| Sbjct: 185872 ttctgaagccaaagctgccctt 185851
>gb|AC067859.7| Homo sapiens chromosome 18, clone RP11-569D6, complete sequence Length = 195609 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 18480 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 18421 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 18420 aactatttcaccag 18407
>gb|AF212233.1|AF212233 Homo sapiens microsomal signal peptidase subunit mRNA, complete cds Length = 794 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 402 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 343 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 342 aactatttcaccag 329
>gb|BC009703.1| Homo sapiens SEC11-like 3 (S. cerevisiae), mRNA (cDNA clone MGC:9299 IMAGE:3895819), complete cds Length = 782 Score = 44.1 bits (22), Expect = 0.54 Identities = 61/74 (82%) Strand = Plus / Minus Query: 414 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 473 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 389 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 330 Query: 474 aactatttctccag 487 ||||||||| |||| Sbjct: 329 aactatttcaccag 316
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 458 catcaatattaaaaacaactatttctcca 486 ||||||||| |||||||||||||| |||| Sbjct: 1225090 catcaatatcaaaaacaactatttttcca 1225118
>emb|AL139077.2|CJ11168X4 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 4/6 Length = 282183 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 458 catcaatattaaaaacaactatttctcca 486 ||||||||| |||||||||||||| |||| Sbjct: 164204 catcaatatcaaaaacaactatttttcca 164232
>emb|AJ000744.1|CJAJ744 Campylobacter jejuni gmk gene, partial Length = 300 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 458 catcaatattaaaaacaactatttctcca 486 ||||||||| |||||||||||||| |||| Sbjct: 236 catcaatatcaaaaacaactatttttcca 208
>gb|AC023904.10| Homo sapiens chromosome 10 clone RP11-369L1, complete sequence Length = 190712 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 tcaacttctccactttcttgg 411 ||||||||||||||||||||| Sbjct: 42368 tcaacttctccactttcttgg 42348
>dbj|AB005234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK5 Length = 89779 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 gccatcaatattaaaaacaac 476 ||||||||||||||||||||| Sbjct: 41009 gccatcaatattaaaaacaac 40989
>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 cttttaaatccaggctccat 551 |||||||||||||||||||| Sbjct: 25908 cttttaaatccaggctccat 25889
>ref|NM_112441.3| Arabidopsis thaliana peptidase AT3G15710 mRNA, complete cds Length = 872 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 436 tgaacaattggaatttcacggccatcaa 463 |||||||| ||||||||||| ||||||| Sbjct: 410 tgaacaatgggaatttcacgaccatcaa 383
>gb|DQ008592.1| Escherichia coli serogroup O174 O antigen gene cluster, partial sequence Length = 5660 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 463 atattaaaaacaactatttctcca 486 ||||||||| |||||||||||||| Sbjct: 3254 atattaaaatcaactatttctcca 3277
>gb|BT015660.1| Arabidopsis thaliana At3g15710 gene, complete cds Length = 543 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 436 tgaacaattggaatttcacggccatcaa 463 |||||||| ||||||||||| ||||||| Sbjct: 287 tgaacaatgggaatttcacgaccatcaa 260
>gb|BT015149.1| Arabidopsis thaliana At3g15710 gene, complete cds Length = 805 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 436 tgaacaattggaatttcacggccatcaa 463 |||||||| ||||||||||| ||||||| Sbjct: 370 tgaacaatgggaatttcacgaccatcaa 343
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgaccagcaggcccagcgcg 216 |||||||||||||||||||| Sbjct: 2728368 tgaccagcaggcccagcgcg 2728349
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgaccagcaggcccagcgcg 216 |||||||||||||||||||| Sbjct: 3426292 tgaccagcaggcccagcgcg 3426311
>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence Length = 245623 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tgtaggaacagataaaaata 86 |||||||||||||||||||| Sbjct: 122542 tgtaggaacagataaaaata 122561
>emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 144586 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ttaaaaacaactatttctcc 485 |||||||||||||||||||| Sbjct: 95672 ttaaaaacaactatttctcc 95691
>gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland Research Institute) complete sequence Length = 222634 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tgaagccaaagctgcccttg 338 |||||||||||||||||||| Sbjct: 153985 tgaagccaaagctgcccttg 154004
>emb|CR392356.5| Mouse DNA sequence from clone RP23-329D21 on chromosome 11 Contains a novel gene, the 5' end of the Dock2 gene for dedicator of cyto-kinesis 2 and a CpG island, complete sequence Length = 90351 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tctcagtcatcacaatagta 264 |||||||||||||||||||| Sbjct: 28902 tctcagtcatcacaatagta 28921
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 aatattaaaaacaactattt 481 |||||||||||||||||||| Sbjct: 140676 aatattaaaaacaactattt 140657
>emb|AJ851481.1| Gallus gallus mRNA for hypothetical protein, clone 3m23 Length = 2096 Score = 40.1 bits (20), Expect = 8.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 139 tttgcactacaagat-caaaccatgcacaaag 169 |||||||||||| || |||||||||||||||| Sbjct: 703 tttgcactacaacatgcaaaccatgcacaaag 672
>emb|BX927395.18| Zebrafish DNA sequence from clone CH211-72A16 in linkage group 3, complete sequence Length = 152987 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ccaaaattattatcaccttt 380 |||||||||||||||||||| Sbjct: 98789 ccaaaattattatcaccttt 98808
>emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 in linkage group 4 Contains the ascl1a gene for achaete-scute complex-like 1a (Drosophila), the gene for a novel protein similar to vertebrate RecQ protein-like DNA helicase Q1-like (RECQL), the gene for a novel protein similar to tyrosine hydroxylase (th), the pah gene for phenylalanine hydroxylase, the 5' end of the gene for a novel protein similar to vertebrate uncharacterized hematopoietic stem/progenitor cells protein MDS028 (MDS028) and a CpG island, complete sequence Length = 166242 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tgggtttaggcttttgggca 58 |||||||||||||||||||| Sbjct: 2726 tgggtttaggcttttgggca 2707
>gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195430 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 aaacagaatatcaccccttttaaa 539 |||||||||||||| ||||||||| Sbjct: 26903 aaacagaatatcactccttttaaa 26880
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 accagcaggcccagcgcgcc 218 |||||||||||||||||||| Sbjct: 1318248 accagcaggcccagcgcgcc 1318267
>emb|BX826032.1|CNS0A69G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL80ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 855 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 436 tgaacaattggaatttcacggccatcaa 463 |||||||| ||||||||||| ||||||| Sbjct: 393 tgaacaatgggaatttcacgaccatcaa 366
>gb|AY086118.1| Arabidopsis thaliana clone 21563 mRNA, complete sequence Length = 820 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 436 tgaacaattggaatttcacggccatcaa 463 |||||||| ||||||||||| ||||||| Sbjct: 410 tgaacaatgggaatttcacgaccatcaa 383
>emb|BX548006.10| Zebrafish DNA sequence from clone DKEY-127P11, complete sequence Length = 158134 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 tgtgcaaaaacagaatatca 528 |||||||||||||||||||| Sbjct: 11194 tgtgcaaaaacagaatatca 11213
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 atgaccagcaggcccagcgc 215 |||||||||||||||||||| Sbjct: 282687 atgaccagcaggcccagcgc 282668
>emb|BX927116.18| Zebrafish DNA sequence from clone DKEY-261D11 in linkage group 22, complete sequence Length = 155808 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 tgtgcaaaaacagaatatca 528 |||||||||||||||||||| Sbjct: 77458 tgtgcaaaaacagaatatca 77477
>emb|BX914215.7| Zebrafish DNA sequence from clone DKEY-245F7 in linkage group 4, complete sequence Length = 141185 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tgggtttaggcttttgggca 58 |||||||||||||||||||| Sbjct: 59939 tgggtttaggcttttgggca 59958
>emb|AL929274.7| Zebrafish DNA sequence from clone CH211-79M20 in linkage group 22, complete sequence Length = 169459 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 tgtgcaaaaacagaatatca 528 |||||||||||||||||||| Sbjct: 42047 tgtgcaaaaacagaatatca 42066
>gb|AC119259.15| Mus musculus chromosome 18, clone RP24-285N19, complete sequence Length = 169310 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 cttttaaatccaggctccat 551 |||||||||||||||||||| Sbjct: 159670 cttttaaatccaggctccat 159651
>dbj|AK116879.1| Ciona intestinalis cDNA, clone:cilv028p04, full insert sequence Length = 1775 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gcaacaaaacttgttctgcc 128 |||||||||||||||||||| Sbjct: 1252 gcaacaaaacttgttctgcc 1271
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 accagcaggcccagcgcgcc 218 |||||||||||||||||||| Sbjct: 3218929 accagcaggcccagcgcgcc 3218948
>gb|AC118263.8| Mus musculus chromosome 1, clone RP24-502N12, complete sequence Length = 203126 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 ccatcaatattaaaaacaactatt 480 |||||||||||||||||| ||||| Sbjct: 76345 ccatcaatattaaaaacagctatt 76322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,971,490 Number of Sequences: 3902068 Number of extensions: 5971490 Number of successful extensions: 115916 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 115525 Number of HSP's gapped (non-prelim): 380 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
