ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3o13 |
|---|---|
| Clone Library Name | barley_pub |
>CDKL3_RAT (Q9JM01) Cyclin-dependent kinase-like 3 (EC 2.7.11.22)| (Serine/threonine protein kinase NKIATRE) Length = 593 Score = 27.3 bits (59), Expect(2) = 0.80 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 134 VNTERNAIDERTASQCKS*TWNKHKLNVGVC 42 V TE+ A +ERT + + NK KLN C Sbjct: 489 VQTEKGAFNERTGQNDQIASGNKRKLNFSKC 519 Score = 23.9 bits (50), Expect(2) = 0.80 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 238 LVLDPYALTSFDLLLDQSSSTMMHP 164 +++ P LTS +LL SS + HP Sbjct: 430 MIMPPINLTSSNLLAANPSSNLSHP 454
>CDKL3_MOUSE (Q8BLF2) Cyclin-dependent kinase-like 3 (EC 2.7.11.22)| Length = 595 Score = 26.6 bits (57), Expect(2) = 1.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 134 VNTERNAIDERTASQCKS*TWNKHKLNVGVC 42 V TE+ A +ERT + + NK KLN C Sbjct: 489 VQTEKGAFNERTGQNDQISSGNKRKLNFPKC 519 Score = 23.5 bits (49), Expect(2) = 1.7 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 238 LVLDPYALTSFDLLLDQSSSTMMHP 164 +++ P LTS +LL SS + HP Sbjct: 430 MIMPPINLTSSNLLAANLSSNLSHP 454
>EMBA_MYCSM (Q50394) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1092 Score = 31.2 bits (69), Expect = 2.1 Identities = 29/101 (28%), Positives = 43/101 (42%) Frame = -1 Query: 541 GAALHPSTIQVSNYNQLVASAITWQNSKDGNAYLKIKVLNFGNKAVDLSISITGLENGIQ 362 G A P + N+ Q+V S+ WQ++ DG +L I+ L ++ Sbjct: 996 GVAELPEYRIIPNFKQMVVSSNQWQSAADGGPFLFIQAL-------------------LR 1036 Query: 361 TFGSIKTVLTSGSLWDENSFQQPDKVVPVESPITNAREEMS 239 T +I T L D S ++ +VVP E T A EE S Sbjct: 1037 T-EAIPTYLRDDWYRDWGSIERYIRVVPQEQAPTAAIEEGS 1076
>GLPK_PYRKO (O93623) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 497 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = +2 Query: 176 RATALVQEEIKRGEGVRIQYKTHLLPRIGYRAFHRHHLVWLLEGI 310 R TA + EEIKR G I+ KT L+P + A L WLL+ + Sbjct: 104 RRTAEMVEEIKREYGTMIKEKTGLVPDAYFSA---SKLKWLLDNV 145
>NDPA_PSERE (Q8GHV6) Nucleoid-associated protein ndpA| Length = 333 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/95 (20%), Positives = 37/95 (38%) Frame = -1 Query: 472 WQNSKDGNAYLKIKVLNFGNKAVDLSISITGLENGIQTFGSIKTVLTSGSLWDENSFQQP 293 WQN+K Y+ G K D G + G+ G +T+L + S + E+ Sbjct: 160 WQNNKQSKQYISFIKGKNGRKVSDYFRDFIGCQEGVDAPGETRTLLKAFSDFVESEDLPE 219 Query: 292 DKVVPVESPITNAREEMSLVLDPYALTSFDLLLDQ 188 ++ + + + + +P L L+D+ Sbjct: 220 EQAREKTNTLVGYATSQAKLGEPMTLEELSGLIDE 254
>TRMU_XYLFT (Q87DM0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 379 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 15/42 (35%) Frame = +1 Query: 244 SPPSHWLSGFPPAP---------------PCLVAGRNSHPIE 324 S P+HW+SG PPAP PC V RN ++ Sbjct: 285 SEPAHWVSGSPPAPTFTCTAQTRYRQADEPCKVTVRNDGSLD 326
>TRMU_XYLFA (Q9PDD9) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 379 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 15/42 (35%) Frame = +1 Query: 244 SPPSHWLSGFPPAP---------------PCLVAGRNSHPIE 324 S P+HW+SG PPAP PC V RN ++ Sbjct: 285 SEPAHWVSGSPPAPTFTCTAQTRYRQADEPCKVTVRNDGSLD 326
>NDPA_PSESM (Q887M6) Nucleoid-associated protein ndpA| Length = 333 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/96 (19%), Positives = 38/96 (39%) Frame = -1 Query: 472 WQNSKDGNAYLKIKVLNFGNKAVDLSISITGLENGIQTFGSIKTVLTSGSLWDENSFQQP 293 WQN+K Y+ G K + G + G+ G +T+L + S + E+ Sbjct: 160 WQNNKQSKQYISFIKGKNGKKVSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPE 219 Query: 292 DKVVPVESPITNAREEMSLVLDPYALTSFDLLLDQS 185 + + + S + +P L + L+D++ Sbjct: 220 ESAREKTKTLIDYASSQSKMGEPMGLEALSELIDEN 255
>RENT1_FUGRU (Q98TR3) Putative regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase RENT1) Length = 1097 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/97 (24%), Positives = 44/97 (45%) Frame = -1 Query: 427 LNFGNKAVDLSISITGLENGIQTFGSIKTVLTSGSLWDENSFQQPDKVVPVESPITNARE 248 + F N L++++T + G+ G+ K L+ LW+ ++ V VE P+ N RE Sbjct: 830 IGFLNDPRRLNVALTRAKYGVIIVGNPKA-LSKQPLWNNLLNNYKEQKVLVEGPLNNLRE 888 Query: 247 EMSLVLDPYALTSFDLLLDQSSSTMMHPVPESSLHSS 137 + P L + + + ST M+ E+ + S Sbjct: 889 SLMQFSKPRKLV--NTINPRFMSTAMYDAREALIPGS 923
>KPYK_METEX (O05118) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 483 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -1 Query: 355 GSIKTVLTSGSLWDENSF-QQPDKVVPVESPITNAREEMSLVLDPYALTSFDLLLDQSSS 179 G ++ L +G+ W SF Q+P+ V V+ M+ + P ALT D +++ S Sbjct: 182 GDLEAGLAAGADWIAVSFVQRPEDVAEVKKVAAGRALVMAKIEKPQALTRLDEIIEISDG 241 Query: 178 TMM 170 M+ Sbjct: 242 IMV 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,910,746 Number of Sequences: 219361 Number of extensions: 1961501 Number of successful extensions: 4887 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4883 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
