ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3o11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481260.1| Oryza sativa (japonica cultivar-group), mRNA 307 2e-80
2dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
3gb|AY105494.1| Zea mays PCO138455 mRNA sequence 260 5e-66
4gb|AY111642.1| Zea mays CL34420_2 mRNA sequence 252 1e-63
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
6dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
7dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
8ref|XM_480197.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
9ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.002
10dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
11dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, comple... 44 0.55
13dbj|AK044864.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 44 0.55
14gb|U64915.1|GMU64915 Glycine max farnesylated protein GMFP4 mRNA... 44 0.55
15ref|NM_202223.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPL... 42 2.2
16ref|NM_102974.2| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPL... 42 2.2
17ref|NM_001036050.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULT... 42 2.2
18gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 42 2.2
19dbj|AK221090.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 2.2
20gb|AF334723.1| Arabidopsis thaliana clone C00117 (h) unknown pro... 42 2.2
21gb|AF385687.1|AF385687 Arabidopsis thaliana At1g32400/F5D14_22 m... 42 2.2
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
23emb|AL929105.27| Zebrafish DNA sequence from clone CH211-142D6 i... 42 2.2
24emb|BX814048.1|CNS0ADMF Arabidopsis thaliana Full-length cDNA Co... 42 2.2
25emb|BX817086.1|CNS0ADBV Arabidopsis thaliana Full-length cDNA Co... 42 2.2
26emb|BX816778.1|CNS0AD9Y Arabidopsis thaliana Full-length cDNA Co... 42 2.2
27gb|AC068286.5| Homo sapiens BAC clone RP11-526G2 from 2, complet... 42 2.2
28gb|AY088560.1| Arabidopsis thaliana clone 7849 mRNA, complete se... 42 2.2
29gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thali... 42 2.2
30dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
31emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 42 2.2
32dbj|AB085684.1| Arabidopsis thaliana TOM2A mRNA for tobamovirus ... 42 2.2
33dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 2.2
34gb|AC158121.12| Mus musculus chromosome 5, clone RP23-440H19, co... 40 8.6
35gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 8.6
36gb|AC087606.2| Trypanosoma brucei chromosome 4 clone RPCI93-4J6,... 40 8.6
37gb|AC079933.3| Trypanosoma brucei chromosome 4 clone RPCI93-1H19... 40 8.6
38gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosom... 40 8.6
39gb|AC159272.2| Mus musculus BAC clone RP23-423J20 from chromosom... 40 8.6
40gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete ... 40 8.6
41emb|BX323064.13| Zebrafish DNA sequence from clone DKEYP-13D12 i... 40 8.6
42emb|AL132982.12|HSKB152G3 Human DNA sequence from clone KB-152G3... 40 8.6
43emb|AL023804.4|HS633O20 Human DNA sequence from clone RP4-633O20... 40 8.6
44emb|AL157994.1|SPAC105 S.pombe chromosome I cosmid c105 40 8.6
45gb|AC157783.7| Mus musculus chromosome 5, clone RP23-340G2, comp... 40 8.6
46gb|AC101940.17| Mus musculus chromosome 3, clone RP24-111E3, com... 40 8.6
47gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosom... 40 8.6
48gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Ca... 40 8.6
49dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
50gb|AC123920.4| Mus musculus BAC clone RP24-130L14 from 13, compl... 40 8.6
51gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, com... 40 8.6
52gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome... 40 8.6
53emb|AL732456.6| Mouse DNA sequence from clone RP23-405D18 on chr... 40 8.6 
>ref|XM_481260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1385

 Score =  307 bits (155), Expect = 2e-80
 Identities = 325/379 (85%), Gaps = 2/379 (0%)
 Strand = Plus / Minus

                                                                        
Query: 223  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 282
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 1034 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 975

                                                                        
Query: 283  gggttgtaagtaaattggctggtgtccagaccatacttctctcgcatcctttggctccac 342
            || || || || || ||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 974  ggattataggtgaactggcttgtgtccagaccatacttctcacgcatcctctggctccat 915

                                                                        
Query: 343  gcatcatttctgctcgcacgttgatcaagtgttgggacgggaacaccagtagccggagca 402
            ||||| |||||||| || ||||| ||||| ||||  || |||||||||||||| ||| ||
Sbjct: 914  gcatcgtttctgctagcgcgttgctcaagggttgcaacaggaacaccagtagcaggaaca 855

                                                                        
Query: 403  ttctgggaatggatcagaggctgacggatgctagtgcttcgagcagttccaatgatttca 462
            || || ||||| || || ||||| |||||||||||||||| || |||| | ||||| |||
Sbjct: 854  ttttgtgaatgaattagtggctgccggatgctagtgcttctagaagttgcgatgatctca 795

                                                                        
Query: 463  tcatcactgtcatactcagcaggtttgttcattgccctgacaacaagagctaacaaggaa 522
            ||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 794  tcatcgctgtcatattcagcaggtttgttcattgccctgacaaccagtgctaa-aaggaa 736

                                                                        
Query: 523  aagtaatacctgaaaaattacaacaccaagtgcaacccatcttgcaatctttccagtttt 582
            ||| |||||||  ||||| |||  |||||| |||||||||||||||||| | ||||||||
Sbjct: 735  aagcaatacctcgaaaatgacactaccaagagcaacccatcttgcaatc-tcccagtttt 677

                               
Query: 583  ctttcagaaagtcatacat 601
            | || ||||||||||||||
Sbjct: 676  ccttgagaaagtcatacat 658
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>dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037J09, full
            insert sequence
          Length = 1385

 Score =  307 bits (155), Expect = 2e-80
 Identities = 325/379 (85%), Gaps = 2/379 (0%)
 Strand = Plus / Minus

                                                                        
Query: 223  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 282
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 1034 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 975

                                                                        
Query: 283  gggttgtaagtaaattggctggtgtccagaccatacttctctcgcatcctttggctccac 342
            || || || || || ||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 974  ggattataggtgaactggcttgtgtccagaccatacttctcacgcatcctctggctccat 915

                                                                        
Query: 343  gcatcatttctgctcgcacgttgatcaagtgttgggacgggaacaccagtagccggagca 402
            ||||| |||||||| || ||||| ||||| ||||  || |||||||||||||| ||| ||
Sbjct: 914  gcatcgtttctgctagcgcgttgctcaagggttgcaacaggaacaccagtagcaggaaca 855

                                                                        
Query: 403  ttctgggaatggatcagaggctgacggatgctagtgcttcgagcagttccaatgatttca 462
            || || ||||| || || ||||| |||||||||||||||| || |||| | ||||| |||
Sbjct: 854  ttttgtgaatgaattagtggctgccggatgctagtgcttctagaagttgcgatgatctca 795

                                                                        
Query: 463  tcatcactgtcatactcagcaggtttgttcattgccctgacaacaagagctaacaaggaa 522
            ||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 794  tcatcgctgtcatattcagcaggtttgttcattgccctgacaaccagtgctaa-aaggaa 736

                                                                        
Query: 523  aagtaatacctgaaaaattacaacaccaagtgcaacccatcttgcaatctttccagtttt 582
            ||| |||||||  ||||| |||  |||||| |||||||||||||||||| | ||||||||
Sbjct: 735  aagcaatacctcgaaaatgacactaccaagagcaacccatcttgcaatc-tcccagtttt 677

                               
Query: 583  ctttcagaaagtcatacat 601
            | || ||||||||||||||
Sbjct: 676  ccttgagaaagtcatacat 658
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>gb|AY105494.1| Zea mays PCO138455 mRNA sequence
          Length = 1377

 Score =  260 bits (131), Expect = 5e-66
 Identities = 331/395 (83%), Gaps = 2/395 (0%)
 Strand = Plus / Minus

                                                                        
Query: 207  tcttcacattacggtgcagcggctcctttcttcagctggaggtgccccattttgctgata 266
            |||||||||||  ||||| || ||||||||||||||  | || || ||||| ||||| ||
Sbjct: 1020 tcttcacattatagtgcatcgactcctttcttcagcctgtggagcgccattctgctggta 961

                                                                        
Query: 267  tcgggttgcatctgatgggttgtaagtaaattggctggtgtccagaccatacttctctcg 326
             | | |||  ||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct: 960  cctgcttgggtctgaggggttgtacgtgaactggctcgtgtccagaccatacttctctcg 901

                                                                        
Query: 327  catcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgggacgggaac 386
            ||||||||||||||| ||||||||||| || | ||| ||||| ||||||||||| |||||
Sbjct: 900  catcctttggctccaggcatcatttctacttgaacgctgatcgagtgttgggacaggaac 841

                                                                        
Query: 387  accagtagccggagcattctgggaatggatcagaggctgacggatgctagtgcttcgagc 446
            ||| || |||||  |||| |||| ||||||||  ||||| || ||| ||| ||||||  |
Sbjct: 840  accggtggccggcacattttgggcatggatcaatggctgccgcatggtagggcttcggcc 781

                                                                        
Query: 447  agttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgccctgacaac 506
            | || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 780  aattgcaataatttcatcatcactgtcatactccgcaggtttgttcattgccctgacaac 721

                                                                        
Query: 507  aagagctaacaaggaaaagtaatacctgaaaaattacaacaccaagtgcaacccatcttg 566
             ||||||||  || || || | | ||| |||||  ||||| ||||| |||||||||||||
Sbjct: 720  cagagctaa-tagaaagagcactgcctcaaaaacaacaacgccaagagcaacccatcttg 662

                                               
Query: 567  caatctttccagttttctttcagaaagtcatacat 601
            ||||| | ||||||||  ||||||||| |||||||
Sbjct: 661  caatc-tcccagtttttcttcagaaagccatacat 628
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>gb|AY111642.1| Zea mays CL34420_2 mRNA sequence
          Length = 601

 Score =  252 bits (127), Expect = 1e-63
 Identities = 265/311 (85%)
 Strand = Plus / Minus

                                                                       
Query: 207 tcttcacattacggtgcagcggctcctttcttcagctggaggtgccccattttgctgata 266
           |||||||||||  ||||| || ||||||||||||||  | || |  ||||||||||| ||
Sbjct: 399 tcttcacattatagtgcatcgactcctttcttcagcccgtggcgtgccattttgctggta 340

                                                                       
Query: 267 tcgggttgcatctgatgggttgtaagtaaattggctggtgtccagaccatacttctctcg 326
            | | |||  ||||| |||||||| || || ||||| |||||||  | ||||||||||||
Sbjct: 339 cctgcttgggtctgaagggttgtatgtgaactggctcgtgtccactcgatacttctctcg 280

                                                                       
Query: 327 catcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgggacgggaac 386
           ||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 279 catcctttggctccaggcatcatttctacttgcacgttgatcaagtgttgggacaggaac 220

                                                                       
Query: 387 accagtagccggagcattctgggaatggatcagaggctgacggatgctagtgcttcgagc 446
           |||||| || ||| |||| |||| ||||||||| ||||| |||||| ||| ||||||  |
Sbjct: 219 accagtggcaggaacattttgggtatggatcagtggctgccggatggtagggcttcggcc 160

                                                                       
Query: 447 agttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgccctgacaac 506
           | || | || ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 159 aattgctataatttcgtcatcactgtcatactcagcaggtttgttcattgccctgacagc 100

                      
Query: 507 aagagctaaca 517
            ||||||||||
Sbjct: 99  cagagctaaca 89



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 557 acccatcttgcaatctttccagttttctttcagaaagtcatacat 601
           ||||||||||||||||  ||||||||| |||||||||||||||||
Sbjct: 50  acccatcttgcaatctc-ccagttttccttcagaaagtcatacat 7
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  184 bits (93), Expect = 2e-43
 Identities = 187/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Plus

                                                                            
Query: 318      cttctctcgcatcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgg 377
                |||||| |||||||| |||||||| ||||| |||||||| || ||||| ||||| |||| 
Sbjct: 11049629 cttctcacgcatcctctggctccatgcatcgtttctgctagcgcgttgctcaagggttgc 11049688

                                                                            
Query: 378      gacgggaacaccagtagccggagcattctgggaatggatcagaggctgacggatgctagt 437
                 || |||||||||||||| ||| |||| || ||||| || || ||||| |||||||||||
Sbjct: 11049689 aacaggaacaccagtagcaggaacattttgtgaatgaattagtggctgccggatgctagt 11049748

                                                                            
Query: 438      gcttcgagcagttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgc 497
                ||||| || |||| | ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 11049749 gcttctagaagttgcgatgatctcatcatcgctgtcatattcagcaggtttgttcattgc 11049808

                                                     
Query: 498      cctgacaacaagagctaacaaggaaaagtaatacctg 534
                ||||||||| || ||||| ||||||||| ||||||||
Sbjct: 11049809 cctgacaaccagtgctaa-aaggaaaagcaatacctg 11049844



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 223      cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 282
                |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 11049456 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 11049515

                                                     
Query: 283      gggttgtaagtaaattggctggtgtccagaccatact 319
                || || || || || ||||| ||||||||||||||||
Sbjct: 11049516 ggattataggtgaactggcttgtgtccagaccatact 11049552



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                       
Query: 547      accaagtgcaacccatcttgcaatctttccagttttctttcagaaagtcatacat 601
                |||||| |||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct: 11054155 accaagagcaacccatcttgcaatc-tcccagttttccttgagaaagtcatacat 11054208



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 579     ttttctttcagaaagtcata 598
               ||||||||||||||||||||
Sbjct: 9224975 ttttctttcagaaagtcata 9224956
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>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score =  184 bits (93), Expect = 2e-43
 Identities = 187/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Plus

                                                                         
Query: 318   cttctctcgcatcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgg 377
             |||||| |||||||| |||||||| ||||| |||||||| || ||||| ||||| |||| 
Sbjct: 20235 cttctcacgcatcctctggctccatgcatcgtttctgctagcgcgttgctcaagggttgc 20294

                                                                         
Query: 378   gacgggaacaccagtagccggagcattctgggaatggatcagaggctgacggatgctagt 437
              || |||||||||||||| ||| |||| || ||||| || || ||||| |||||||||||
Sbjct: 20295 aacaggaacaccagtagcaggaacattttgtgaatgaattagtggctgccggatgctagt 20354

                                                                         
Query: 438   gcttcgagcagttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgc 497
             ||||| || |||| | ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 20355 gcttctagaagttgcgatgatctcatcatcgctgtcatattcagcaggtttgttcattgc 20414

                                                  
Query: 498   cctgacaacaagagctaacaaggaaaagtaatacctg 534
             ||||||||| || ||||| ||||||||| ||||||||
Sbjct: 20415 cctgacaaccagtgctaa-aaggaaaagcaatacctg 20450



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 223   cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 282
             |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 20062 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 20121

                                                  
Query: 283   gggttgtaagtaaattggctggtgtccagaccatact 319
             || || || || || ||||| ||||||||||||||||
Sbjct: 20122 ggattataggtgaactggcttgtgtccagaccatact 20158



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                    
Query: 547   accaagtgcaacccatcttgcaatctttccagttttctttcagaaagtcatacat 601
             |||||| |||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct: 24761 accaagagcaacccatcttgcaatc-tcccagttttccttgagaaagtcatacat 24814
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>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0560B10, complete sequence
          Length = 108295

 Score =  184 bits (93), Expect = 2e-43
 Identities = 187/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Plus

                                                                        
Query: 318  cttctctcgcatcctttggctccacgcatcatttctgctcgcacgttgatcaagtgttgg 377
            |||||| |||||||| |||||||| ||||| |||||||| || ||||| ||||| |||| 
Sbjct: 8145 cttctcacgcatcctctggctccatgcatcgtttctgctagcgcgttgctcaagggttgc 8204

                                                                        
Query: 378  gacgggaacaccagtagccggagcattctgggaatggatcagaggctgacggatgctagt 437
             || |||||||||||||| ||| |||| || ||||| || || ||||| |||||||||||
Sbjct: 8205 aacaggaacaccagtagcaggaacattttgtgaatgaattagtggctgccggatgctagt 8264

                                                                        
Query: 438  gcttcgagcagttccaatgatttcatcatcactgtcatactcagcaggtttgttcattgc 497
            ||||| || |||| | ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 8265 gcttctagaagttgcgatgatctcatcatcgctgtcatattcagcaggtttgttcattgc 8324

                                                 
Query: 498  cctgacaacaagagctaacaaggaaaagtaatacctg 534
            ||||||||| || ||||| ||||||||| ||||||||
Sbjct: 8325 cctgacaaccagtgctaa-aaggaaaagcaatacctg 8360



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                        
Query: 223  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 282
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 7972 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 8031

                                                 
Query: 283  gggttgtaagtaaattggctggtgtccagaccatact 319
            || || || || || ||||| ||||||||||||||||
Sbjct: 8032 ggattataggtgaactggcttgtgtccagaccatact 8068



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                    
Query: 547   accaagtgcaacccatcttgcaatctttccagttttctttcagaaagtcatacat 601
             |||||| |||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct: 12671 accaagagcaacccatcttgcaatc-tcccagttttccttgagaaagtcatacat 12724
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>ref|XM_480197.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1241

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 303  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 352
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1028 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 979
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>ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.115 mRNA
          Length = 1341

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 303  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 352
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1031 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 982
to top
>dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full
            insert sequence
          Length = 1340

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 303  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 352
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1030 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 981
to top
>dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K06, full
            insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 303  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 352
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1029 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 980
to top
>gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, complete sequence
          Length = 192434

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 453   aatgatttcatcatcactgtca 474
             ||||||||||||||||||||||
Sbjct: 64763 aatgatttcatcatcactgtca 64784
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>dbj|AK044864.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130008O15
           product:unclassifiable, full insert sequence
          Length = 3740

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 453 aatgatttcatcatcactgtca 474
           ||||||||||||||||||||||
Sbjct: 449 aatgatttcatcatcactgtca 428
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>gb|U64915.1|GMU64915 Glycine max farnesylated protein GMFP4 mRNA, partial cds
          Length = 619

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 337 ctccacgcatcatttctgctcgcacgttgatcaagtgt 374
           ||||| |||||||||||||| | ||| |||||||||||
Sbjct: 210 ctccaagcatcatttctgcttggacgctgatcaagtgt 173
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>ref|NM_202223.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.2 mRNA,
           complete cds
          Length = 1501

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 971 ttcatcatcactgtcatactc 951
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>ref|NM_102974.2| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)
           AT1G32400 (TOM2A) transcript variant AT1G32400.1 mRNA,
           complete cds
          Length = 1343

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 813 ttcatcatcactgtcatactc 793
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>ref|NM_001036050.1| Arabidopsis thaliana TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) AT1G32400
            (TOM2A) transcript variant AT1G32400.3 mRNA, complete cds
          Length = 1720

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 459  ttcatcatcactgtcatactc 479
            |||||||||||||||||||||
Sbjct: 1189 ttcatcatcactgtcatactc 1169
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>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 482    caggtttgttcattgccctga 502
              |||||||||||||||||||||
Sbjct: 177040 caggtttgttcattgccctga 177020
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>dbj|AK221090.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-83-F06
          Length = 584

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 44  ttcatcatcactgtcatactc 24
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>gb|AF334723.1| Arabidopsis thaliana clone C00117 (h) unknown protein (At1g32400)
           mRNA, complete cds
          Length = 843

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 597 ttcatcatcactgtcatactc 577
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>gb|AF385687.1|AF385687 Arabidopsis thaliana At1g32400/F5D14_22 mRNA, complete cds
          Length = 1343

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 813 ttcatcatcactgtcatactc 793
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 66       tcaaaagacagcaggtaagat 86
                |||||||||||||||||||||
Sbjct: 20252425 tcaaaagacagcaggtaagat 20252405



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 66       tcaaaagacagcaggtaagat 86
                |||||||||||||||||||||
Sbjct: 20234206 tcaaaagacagcaggtaagat 20234186



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 66       tcaaaagacagcaggtaagat 86
                |||||||||||||||||||||
Sbjct: 20215989 tcaaaagacagcaggtaagat 20215969
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>emb|AL929105.27| Zebrafish DNA sequence from clone CH211-142D6 in linkage group 7,
             complete sequence
          Length = 176147

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 564   ttgcaatctttccagttttct 584
             |||||||||||||||||||||
Sbjct: 99606 ttgcaatctttccagttttct 99626
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>emb|BX814048.1|CNS0ADMF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB54ZC10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1206

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 714 ttcatcatcactgtcatactc 694
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>emb|BX817086.1|CNS0ADBV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH84ZH12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1407

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 974 ttcatcatcactgtcatactc 954
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>emb|BX816778.1|CNS0AD9Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH67ZH02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1254

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 759 ttcatcatcactgtcatactc 739
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>gb|AC068286.5| Homo sapiens BAC clone RP11-526G2 from 2, complete sequence
          Length = 137631

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    ttcaaaagacagcaggtaaga 85
             |||||||||||||||||||||
Sbjct: 77032 ttcaaaagacagcaggtaaga 77052
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>gb|AY088560.1| Arabidopsis thaliana clone 7849 mRNA, complete sequence
          Length = 1325

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 795 ttcatcatcactgtcatactc 775
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>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 127462

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 459   ttcatcatcactgtcatactc 479
             |||||||||||||||||||||
Sbjct: 51510 ttcatcatcactgtcatactc 51530
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>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1372_D12
          Length = 179898

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     tcaaaagacagcaggtaagat 86
              |||||||||||||||||||||
Sbjct: 154813 tcaaaagacagcaggtaagat 154793



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     tcaaaagacagcaggtaagat 86
              |||||||||||||||||||||
Sbjct: 136594 tcaaaagacagcaggtaagat 136574



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     tcaaaagacagcaggtaagat 86
              |||||||||||||||||||||
Sbjct: 118377 tcaaaagacagcaggtaagat 118357
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>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
              sequence
          Length = 145652

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 482    caggtttgttcattgccctga 502
              |||||||||||||||||||||
Sbjct: 141165 caggtttgttcattgccctga 141145
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>dbj|AB085684.1| Arabidopsis thaliana TOM2A mRNA for tobamovirus multiplication 2A,
           complete cds
          Length = 1293

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 ttcatcatcactgtcatactc 479
           |||||||||||||||||||||
Sbjct: 757 ttcatcatcactgtcatactc 737
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>dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04I02, TM0021,
             complete sequence
          Length = 83700

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 223   cagcggctcctttcttcagctggaggtgc 251
             ||||| ||||||||||||| |||||||||
Sbjct: 39414 cagcgactcctttcttcagttggaggtgc 39386
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>gb|AC158121.12| Mus musculus chromosome 5, clone RP23-440H19, complete sequence
          Length = 202895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 530    acctgaaaaattacaacacc 549
              ||||||||||||||||||||
Sbjct: 170114 acctgaaaaattacaacacc 170133
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    aacaacacggtatatccaaa 148
              ||||||||||||||||||||
Sbjct: 715907 aacaacacggtatatccaaa 715888
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>gb|AC087606.2| Trypanosoma brucei chromosome 4 clone RPCI93-4J6, complete sequence
          Length = 37931

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   aacaacacggtatatccaaa 148
             ||||||||||||||||||||
Sbjct: 14628 aacaacacggtatatccaaa 14609
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>gb|AC079933.3| Trypanosoma brucei chromosome 4 clone RPCI93-1H19, complete sequence
          Length = 171392

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    aacaacacggtatatccaaa 148
              ||||||||||||||||||||
Sbjct: 168404 aacaacacggtatatccaaa 168385
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>gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosome 19, complete sequence
          Length = 182733

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 573    ttccagttttctttcagaaa 592
              ||||||||||||||||||||
Sbjct: 119700 ttccagttttctttcagaaa 119681
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>gb|AC159272.2| Mus musculus BAC clone RP23-423J20 from chromosome 13, complete sequence
          Length = 186588

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     aaagacagcaggtaagatgaacat 92
              ||||| ||||||||||||||||||
Sbjct: 178673 aaagagagcaggtaagatgaacat 178696
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>gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete sequence
          Length = 130971

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 210 tcacattacggtgcagcggctcctttcttcagctgg 245
           |||||||| ||| || |||||||| |||||||||||
Sbjct: 439 tcacattatggtacaacggctcctctcttcagctgg 404
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>emb|BX323064.13| Zebrafish DNA sequence from clone DKEYP-13D12 in linkage group 2,
              complete sequence
          Length = 170480

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     ttcaaaagacagcaggtaagatga 88
              |||||||||||| |||||||||||
Sbjct: 155605 ttcaaaagacaggaggtaagatga 155582
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>emb|AL132982.12|HSKB152G3 Human DNA sequence from clone KB-152G3 on chromosome 6 Contains the 3'
             end of the PARK2 gene for Parkinson disease (autosomal
             recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP),
             complete sequence
          Length = 91798

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   ttccagttttctttcagaaa 592
             ||||||||||||||||||||
Sbjct: 17866 ttccagttttctttcagaaa 17847
to top
>emb|AL023804.4|HS633O20 Human DNA sequence from clone RP4-633O20 on chromosome 20q11.23-12
             Contains part of the CTNNBL1 gene for catenin beta like 1,
             complete sequence
          Length = 96460

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   atactcagcaggtttgttca 493
             ||||||||||||||||||||
Sbjct: 74861 atactcagcaggtttgttca 74880
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>emb|AL157994.1|SPAC105 S.pombe chromosome I cosmid c105
          Length = 8999

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    tataatgagatattgattgc 26
            ||||||||||||||||||||
Sbjct: 6117 tataatgagatattgattgc 6098
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>gb|AC157783.7| Mus musculus chromosome 5, clone RP23-340G2, complete sequence
          Length = 212164

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   acctgaaaaattacaacacc 549
             ||||||||||||||||||||
Sbjct: 15780 acctgaaaaattacaacacc 15799
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>gb|AC101940.17| Mus musculus chromosome 3, clone RP24-111E3, complete sequence
          Length = 157242

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ttcaaaagacagcaggtaag 84
             ||||||||||||||||||||
Sbjct: 67239 ttcaaaagacagcaggtaag 67258
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>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete sequence
          Length = 195710

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    tcctttcttcagctggaggtgccc 253
              ||||||||||||||| ||||||||
Sbjct: 193918 tcctttcttcagctgaaggtgccc 193895
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>gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163475

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 564   ttgcaatctttccagttttctttc 587
             ||||||||||||||||||| ||||
Sbjct: 86128 ttgcaatctttccagttttatttc 86151
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>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0036E18
          Length = 141148

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 579   ttttctttcagaaagtcata 598
             ||||||||||||||||||||
Sbjct: 36188 ttttctttcagaaagtcata 36169
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>gb|AC123920.4| Mus musculus BAC clone RP24-130L14 from 13, complete sequence
          Length = 170268

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    aaagacagcaggtaagatgaacat 92
             ||||| ||||||||||||||||||
Sbjct: 78141 aaagagagcaggtaagatgaacat 78164
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>gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, complete sequence
          Length = 190980

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   ttccagttttctttcagaaa 592
             ||||||||||||||||||||
Sbjct: 45429 ttccagttttctttcagaaa 45410
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>gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome 13, complete sequence
          Length = 234110

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   tcctttcttcagctggaggtgccc 253
             ||||||||||||||| ||||||||
Sbjct: 43900 tcctttcttcagctgaaggtgccc 43877
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>emb|AL732456.6| Mouse DNA sequence from clone RP23-405D18 on chromosome X, complete
             sequence
          Length = 136482

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   caaactgtgcaagctgagat 164
             ||||||||||||||||||||
Sbjct: 93800 caaactgtgcaagctgagat 93819


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,402,395
Number of Sequences: 3902068
Number of extensions: 6402395
Number of successful extensions: 126360
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126170
Number of HSP's gapped (non-prelim): 180
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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