ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUREJ_STRPU (Q26627) Sperm receptor for egg jelly precursor (suREJ) 33 0.76
2RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (E... 31 3.7
3PER2_HUMAN (O15055) Period circadian protein 2 30 6.4
4C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor... 30 6.4
5SN1L2_MOUSE (Q8CFH6) Serine/threonine-protein kinase SNF1-like k... 30 6.4
6SN1L2_PONPY (Q5REX1) Serine/threonine-protein kinase SNF1-like k... 30 8.3
7SN1L2_HUMAN (Q9H0K1) Serine/threonine-protein kinase SNF1-like k... 30 8.3

>SUREJ_STRPU (Q26627) Sperm receptor for egg jelly precursor (suREJ)|
          Length = 1450

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 101 KTSICSVILSCSACNICTTSWVISPELAYC 12
           KTSIC    + SA + C T WV +P   YC
Sbjct: 185 KTSICKSTTTFSATDGCATGWVHNPATGYC 214



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>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
            (CAZ-associated structural protein 2) (CAST2)
          Length = 948

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +1

Query: 1    LLLIQYASSGEMTQDVVQILHAEQDRITEQIEVLRPNRCLLFRPFDHINLTGFSSTDQLQ 180
            + L++ +SS + TQ+ V  L  E+DR+ +Q++    NR  L    D+     F S+   Q
Sbjct: 874  IALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMA--DNYEDDHFRSSRSNQ 931

Query: 181  LHRHKFPQXDRTD 219
             +    P  D  +
Sbjct: 932  TNHKPSPDQDEEE 944



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>PER2_HUMAN (O15055) Period circadian protein 2|
          Length = 1255

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 58  LHAEQDRITEQIEVLRPNRCLLFRPFDHINLTGFSSTDQLQLHRHKFPQXDRTDSN 225
           LH     +TEQI  L      L +P  H   +G+ S      H H   Q   +DSN
Sbjct: 455 LHPSIQELTEQIHRL------LLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSN 504



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>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement|
           component 1, q subcomponent, receptor 1) (C1qR) (C1qRp)
           (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93)
          Length = 652

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +3

Query: 444 KGACNQVPSA----TPCSQGCTSRGGSF 515
           +GAC  V       +PC+QGCT+  GSF
Sbjct: 380 EGACQDVDECALGRSPCAQGCTNTDGSF 407



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>SN1L2_MOUSE (Q8CFH6) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
           2.7.11.1) (Salt-inducible kinase 2)
          Length = 931

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = +1

Query: 22  SSGEMTQDVVQILHA---EQDRITEQIEVLRPNRCLLFRPFDHINLTGFSSTDQLQLHRH 192
           S GE  + V++++H+   +Q +  E ++          + ++H     F   ++L+ HR 
Sbjct: 292 SIGEFNEQVLRLMHSLGIDQQKTVESLQN---------KSYNHFAAIYFLLVERLKSHRS 342

Query: 193 KFPQXDRTDSNNRTVRLLQ*VTKTTALALNLYTT 294
            FP   R D   R    +   T   A  + L  T
Sbjct: 343 SFPVEQRLDGRQRRPSTIAEQTVAKAQTVGLPVT 376



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>SN1L2_PONPY (Q5REX1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
           2.7.11.1)
          Length = 925

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 22/91 (24%), Positives = 38/91 (41%)
 Frame = +1

Query: 22  SSGEMTQDVVQILHAEQDRITEQIEVLRPNRCLLFRPFDHINLTGFSSTDQLQLHRHKFP 201
           S GE  + V++++H+      + IE L+       + ++H     F   ++L+ HR  FP
Sbjct: 292 SIGEFNEQVLRLMHSLGIDQQKTIESLQN------KSYNHFAAIYFLLVERLKSHRSSFP 345

Query: 202 QXDRTDSNNRTVRLLQ*VTKTTALALNLYTT 294
              R D   R    +   T   A  + L  T
Sbjct: 346 VEQRLDGRQRRPSAIAEQTVAKAQTVGLPVT 376



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>SN1L2_HUMAN (Q9H0K1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
           2.7.11.1) (Qin-induced kinase)
          Length = 926

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 22/91 (24%), Positives = 38/91 (41%)
 Frame = +1

Query: 22  SSGEMTQDVVQILHAEQDRITEQIEVLRPNRCLLFRPFDHINLTGFSSTDQLQLHRHKFP 201
           S GE  + V++++H+      + IE L+       + ++H     F   ++L+ HR  FP
Sbjct: 292 SIGEFNEQVLRLMHSLGIDQQKTIESLQN------KSYNHFAAIYFLLVERLKSHRSSFP 345

Query: 202 QXDRTDSNNRTVRLLQ*VTKTTALALNLYTT 294
              R D   R    +   T   A  + L  T
Sbjct: 346 VEQRLDGRQRRPSTIAEQTVAKAQTVGLPVT 376


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,903,235
Number of Sequences: 219361
Number of extensions: 1911427
Number of successful extensions: 5223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5216
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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