ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 385 e-103
2dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic D... 385 e-103
3ref|XM_463655.1| Oryza sativa (japonica cultivar-group), predic... 383 e-103
4gb|AY104147.1| Zea mays PCO106418 mRNA sequence 240 5e-60
5emb|AJ577363.1|TAE577363 Triticum aestivum partial mRNA for puta... 163 9e-37
6ref|NM_102496.3| Arabidopsis thaliana unknown protein AT1G27340 ... 70 1e-08
7gb|BT025325.1| Arabidopsis thaliana At1g27340 mRNA, complete cds 70 1e-08
8emb|BX815904.1|CNS0ABSY Arabidopsis thaliana Full-length cDNA Co... 70 1e-08
9emb|BX816952.1|CNS0ABOV Arabidopsis thaliana Full-length cDNA Co... 70 1e-08
10gb|AY085471.1| Arabidopsis thaliana clone 153013 mRNA, complete ... 70 1e-08
11gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana... 70 1e-08
12gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis tha... 48 0.037
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
14gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana... 46 0.15
15dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
16dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
17emb|Z72518.1|CEZC374 Caenorhabditis elegans Cosmid ZC374, comple... 42 2.3
18emb|BX548003.29| Zebrafish DNA sequence from clone DKEY-97I5 in ... 42 2.3
19gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete s... 42 2.3
20gb|BC097349.1| Rattus norvegicus similar to RIKEN cDNA 3010027G1... 42 2.3
21gb|BC081862.1| Rattus norvegicus similar to RIKEN cDNA 3010027G1... 42 2.3
22ref|NM_001024792.1| Rattus norvegicus similar to RIKEN cDNA 3010... 42 2.3
23ref|NM_001003006.1| Canis familiaris T-box 4 (TBX4), mRNA 40 9.0
24gb|AY185178.1|AH012458S4 Canis familiaris transcription factor T... 40 9.0
25gb|BC070931.1| Rattus norvegicus vacuolar protein sorting 4a (ye... 40 9.0
26ref|XM_870492.1| PREDICTED: Bos taurus similar to vacuolar prote... 40 9.0
27gb|AC126029.3| Mus musculus BAC clone RP23-389K5 from chromosome... 40 9.0
28gb|AC124362.3| Mus musculus BAC clone RP24-528N1 from chromosome... 40 9.0
29ref|XM_536805.2| PREDICTED: Canis familiaris similar to vacuolar... 40 9.0
30gb|BC047932.1| Homo sapiens vacuolar protein sorting 4 homolog A... 40 9.0
31gb|BC113224.1| Bos taurus similar to vacuolar protein sorting 4a... 40 9.0
32ref|NM_013245.2| Homo sapiens vacuolar protein sorting 4 homolog... 40 9.0
33emb|Z69086.1|SPAC3H8 S.pombe chromosome I cosmid c3H8 40 9.0
34gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 9.0
35emb|BX470095.12| Zebrafish DNA sequence from clone DKEY-162H1 in... 40 9.0
36gb|AC021118.6| Homo sapiens BAC clone RP11-332D24 from 4, comple... 40 9.0
37gb|AF132747.1| Homo sapiens SKD2 protein mRNA, complete cds 40 9.0
38dbj|AK159117.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 9.0
39dbj|AK169949.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.0
40gb|AC026464.7| Homo sapiens chromosome 16 clone RP11-343C2, comp... 40 9.0
41ref|NM_001018398.1| Schizosaccharomyces pombe 972h- hypothetical... 40 9.0
42dbj|AK047821.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 9.0
43gb|AF255952.1|AF255952 Homo sapiens vacuolar protein sorting VPS... 40 9.0
44gb|AC026474.7| Homo sapiens chromosome 16 clone RP11-70O5, compl... 40 9.0
45gb|AF282903.1| Homo sapiens vacuolar protein sorting factor 4A (... 40 9.0
46gb|AF530161.1| Mus musculus vacuolar protein sorting factor VPS4... 40 9.0
47gb|AY185179.1| Canis familiaris transcription factor Tbx4 (Tbx4)... 40 9.0
48gb|AC134563.5| Mus musculus BAC clone RP24-179M18 from chromosom... 40 9.0
49gb|AF112215.1|AF112215 Homo sapiens SKD1 protein mRNA, complete cds 40 9.0
50gb|BC018368.1| Mus musculus vacuolar protein sorting 4a (yeast),... 40 9.0
51gb|AF159063.1|AF159063 Homo sapiens SKD1-homolog mRNA, complete cds 40 9.0
52emb|BX004786.8| Zebrafish DNA sequence from clone DKEY-1P6 in li... 40 9.0
53ref|NM_126165.1| Mus musculus vacuolar protein sorting 4a (yeast... 40 9.0
54gb|AC123868.4| Mus musculus BAC clone RP23-129K6 from 8, complet... 40 9.0
55gb|AC162441.11| Mus musculus chromosome 1, clone RP23-2E23, comp... 40 9.0
56dbj|AB000821.1| Schizosaccharomyces pombe gene for Aur1, complet... 40 9.0 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  385 bits (194), Expect = e-103
 Identities = 266/286 (93%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                            
Query: 375      gtcagggcgaggcagaggggcacggaccgaatgccgcgccacatgctatccactgctttt 434
                |||||| | ||||||||||||| ||||| ||||| | |||||||||||||||||||||||
Sbjct: 40435740 gtcaggccaaggcagaggggcatggaccaaatgctgtgccacatgctatccactgctttt 40435799

                                                                            
Query: 435      tgcggctgcaagggagcatgcaatcaggtaccttctgccactccttgctcacaaggttgt 494
                |||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct: 40435800 tgcggctgcatgggagcatgcaatcaggaaccttctgccactccttgttcaaaaggttgt 40435859

                                                                            
Query: 495      acatcacgaggcggttcattcgcttcgccttcaaggagagcatgagcaagcccgctgttg 554
                |  |||||||||||||||| |||||||||||||||||||||||||||||  || ||||||
Sbjct: 40435860 atgtcacgaggcggttcatccgcttcgccttcaaggagagcatgagcaa-accactgttg 40435918

                                                                            
Query: 555      cccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatatttggcat 614
                |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 40435919 cccaggcatgtcatcttcatgtgc-ttaccgtagaattctaagcaccagatatttggcat 40435977

                                                              
Query: 615      tctgtccacctccttccagagggagagtcatcttctgcaactccca 660
                |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 40435978 tctgtccacctccttccaga-ggagagtcatcttctgcaactccca 40436022
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>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0592G05
          Length = 146220

 Score =  385 bits (194), Expect = e-103
 Identities = 266/286 (93%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                         
Query: 375   gtcagggcgaggcagaggggcacggaccgaatgccgcgccacatgctatccactgctttt 434
             |||||| | ||||||||||||| ||||| ||||| | |||||||||||||||||||||||
Sbjct: 86981 gtcaggccaaggcagaggggcatggaccaaatgctgtgccacatgctatccactgctttt 87040

                                                                         
Query: 435   tgcggctgcaagggagcatgcaatcaggtaccttctgccactccttgctcacaaggttgt 494
             |||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct: 87041 tgcggctgcatgggagcatgcaatcaggaaccttctgccactccttgttcaaaaggttgt 87100

                                                                         
Query: 495   acatcacgaggcggttcattcgcttcgccttcaaggagagcatgagcaagcccgctgttg 554
             |  |||||||||||||||| |||||||||||||||||||||||||||||  || ||||||
Sbjct: 87101 atgtcacgaggcggttcatccgcttcgccttcaaggagagcatgagcaa-accactgttg 87159

                                                                         
Query: 555   cccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatatttggcat 614
             |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 87160 cccaggcatgtcatcttcatgtgc-ttaccgtagaattctaagcaccagatatttggcat 87218

                                                           
Query: 615   tctgtccacctccttccagagggagagtcatcttctgcaactccca 660
             |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 87219 tctgtccacctccttccaga-ggagagtcatcttctgcaactccca 87263
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>ref|XM_463655.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1155

 Score =  383 bits (193), Expect = e-103
 Identities = 259/277 (93%), Gaps = 3/277 (1%)
 Strand = Plus / Minus

                                                                        
Query: 384  aggcagaggggcacggaccgaatgccgcgccacatgctatccactgctttttgcggctgc 443
            ||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct: 1147 aggcagaggggcatggaccaaatgctgtgccacatgctatccactgctttttgcggctgc 1088

                                                                        
Query: 444  aagggagcatgcaatcaggtaccttctgccactccttgctcacaaggttgtacatcacga 503
            | ||||||||||||||||| |||||||||||||||||| ||| |||||||||  ||||||
Sbjct: 1087 atgggagcatgcaatcaggaaccttctgccactccttgttcaaaaggttgtatgtcacga 1028

                                                                        
Query: 504  ggcggttcattcgcttcgccttcaaggagagcatgagcaagcccgctgttgcccaggcag 563
            |||||||||| |||||||||||||||||||||||||||||  || |||||||||||||| 
Sbjct: 1027 ggcggttcatccgcttcgccttcaaggagagcatgagcaa-accactgttgcccaggcat 969

                                                                        
Query: 564  gtcatcctcatgtgctttaccgtagaattctaagcaccagatatttggcattctgtccac 623
            |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  gtcatcttcatgtgc-ttaccgtagaattctaagcaccagatatttggcattctgtccac 910

                                                 
Query: 624  ctccttccagagggagagtcatcttctgcaactccca 660
            ||||||||||| |||||||||||||||||||||||||
Sbjct: 909  ctccttccaga-ggagagtcatcttctgcaactccca 874
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>gb|AY104147.1| Zea mays PCO106418 mRNA sequence
          Length = 1756

 Score =  240 bits (121), Expect = 5e-60
 Identities = 220/249 (88%), Gaps = 3/249 (1%)
 Strand = Plus / Minus

                                                                        
Query: 412  gccacatgctatccactgctttttgcggctgcaagggagcatgcaatcaggtaccttctg 471
            |||||||| |||||| ||| |||| || || || || |||||||||||||| ||||||||
Sbjct: 1424 gccacatgttatccattgcctttttcgactccatggtagcatgcaatcaggaaccttctg 1365

                                                                        
Query: 472  ccactccttgctcacaaggttgtacatcacgaggcggttcattcgcttcgccttcaagga 531
            ||||||| |  ||| |||||||||  | || |||||||||||  ||||||||||||||||
Sbjct: 1364 ccactcccttttcaaaaggttgtatgtaacaaggcggttcatatgcttcgccttcaagga 1305

                                                                        
Query: 532  gagcatgagcaagcccgctgttgcccaggcaggtcatcctcatgtgctttaccgtagaat 591
            ||||||||||||  || ||||||||||||||  ||||| |||||||| ||||||||||| 
Sbjct: 1304 gagcatgagcaa-accactgttgcccaggcatttcatcttcatgtgc-ttaccgtagaac 1247

                                                                        
Query: 592  tctaagcaccagatatttggcattctgtccacctccttccagagggagagtcatcttctg 651
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1246 tctaagcaccagagatttggcattctgtccacctccttccaga-ggagagtcatcttctg 1188

                     
Query: 652  caactccca 660
            |||||||||
Sbjct: 1187 caactccca 1179
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>emb|AJ577363.1|TAE577363 Triticum aestivum partial mRNA for putative F-box protein
          Length = 595

 Score =  163 bits (82), Expect = 9e-37
 Identities = 96/98 (97%), Gaps = 2/98 (2%)
 Strand = Plus / Minus

                                                                       
Query: 563 ggtcatcctcatgtgctttaccgtagaattctaagcaccagatatttggcattctgtcca 622
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggtcatcctcatgtgctt-accgtagaattctaagcaccagatatttggcattctgtcca 532

                                                 
Query: 623 cctccttccagagggagagtcatcttctgcaactccca 660
           |||||||||||| |||||||||||||||||||||||||
Sbjct: 531 cctccttccaga-ggagagtcatcttctgcaactccca 495
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>ref|NM_102496.3| Arabidopsis thaliana unknown protein AT1G27340 mRNA, complete cds
          Length = 1853

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                        
Query: 550  tgttgcccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatattt 609
            |||||||||| ||  ||||||| ||||||||| ||||| || || |||||||| || |||
Sbjct: 1449 tgttgcccagacaattcatcctaatgtgcttt-ccgtaaaactccaagcaccatatgttt 1391

                                   
Query: 610  ggcattctgtccacctccttcca 632
            ||||||||||| |||||||||||
Sbjct: 1390 ggcattctgtcaacctccttcca 1368
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>gb|BT025325.1| Arabidopsis thaliana At1g27340 mRNA, complete cds
          Length = 1404

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                        
Query: 550  tgttgcccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatattt 609
            |||||||||| ||  ||||||| ||||||||| ||||| || || |||||||| || |||
Sbjct: 1228 tgttgcccagacaattcatcctaatgtgcttt-ccgtaaaactccaagcaccatatgttt 1170

                                   
Query: 610  ggcattctgtccacctccttcca 632
            ||||||||||| |||||||||||
Sbjct: 1169 ggcattctgtcaacctccttcca 1147
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>emb|BX815904.1|CNS0ABSY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH16ZB06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1618

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                        
Query: 550  tgttgcccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatattt 609
            |||||||||| ||  ||||||| ||||||||| ||||| || || |||||||| || |||
Sbjct: 1363 tgttgcccagacaattcatcctaatgtgcttt-ccgtaaaactccaagcaccatatgttt 1305

                                   
Query: 610  ggcattctgtccacctccttcca 632
            ||||||||||| |||||||||||
Sbjct: 1304 ggcattctgtcaacctccttcca 1282
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>emb|BX816952.1|CNS0ABOV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH78ZD04 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1763

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                        
Query: 550  tgttgcccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatattt 609
            |||||||||| ||  ||||||| ||||||||| ||||| || || |||||||| || |||
Sbjct: 1451 tgttgcccagacaattcatcctaatgtgcttt-ccgtaaaactccaagcaccatatgttt 1393

                                   
Query: 610  ggcattctgtccacctccttcca 632
            ||||||||||| |||||||||||
Sbjct: 1392 ggcattctgtcaacctccttcca 1370
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>gb|AY085471.1| Arabidopsis thaliana clone 153013 mRNA, complete sequence
          Length = 1497

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                        
Query: 550  tgttgcccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatattt 609
            |||||||||| ||  ||||||| ||||||||| ||||| || || |||||||| || |||
Sbjct: 1309 tgttgcccagacaattcatcctaatgtgcttt-ccgtaaaactccaagcaccatatgttt 1251

                                   
Query: 610  ggcattctgtccacctccttcca 632
            ||||||||||| |||||||||||
Sbjct: 1250 ggcattctgtcaacctccttcca 1228
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>gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana BAC F17L21 from chromosome I,
             complete sequence
          Length = 99690

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                         
Query: 550   tgttgcccaggcaggtcatcctcatgtgctttaccgtagaattctaagcaccagatattt 609
             |||||||||| ||  ||||||| ||||||||| ||||| || || |||||||| || |||
Sbjct: 41566 tgttgcccagacaattcatcctaatgtgcttt-ccgtaaaactccaagcaccatatgttt 41508

                                    
Query: 610   ggcattctgtccacctccttcca 632
             ||||||||||| |||||||||||
Sbjct: 41507 ggcattctgtcaacctccttcca 41485
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>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 53889

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 607  tttggcattctgtccacctccttc 630
            ||||||||||||||||||||||||
Sbjct: 7420 tttggcattctgtccacctccttc 7397
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 607      tttggcattctgtccacctcctt 629
                |||||||||||||||||||||||
Sbjct: 27166659 tttggcattctgtccacctcctt 27166681
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>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I,
             complete sequence
          Length = 97554

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 602   agatatttggcattctgtccacctcct 628
             |||| ||||||||||||||||||||||
Sbjct: 24993 agatctttggcattctgtccacctcct 25019
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>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1725_H08
          Length = 155431

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 607   tttggcattctgtccacctcctt 629
             |||||||||||||||||||||||
Sbjct: 63108 tttggcattctgtccacctcctt 63130
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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 607   tttggcattctgtccacctcctt 629
             |||||||||||||||||||||||
Sbjct: 17330 tttggcattctgtccacctcctt 17352
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>emb|Z72518.1|CEZC374 Caenorhabditis elegans Cosmid ZC374, complete sequence
          Length = 20600

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 73   gacagaataacggaacaaatagaag 97
            ||||||| |||||||||||||||||
Sbjct: 5987 gacagaaaaacggaacaaatagaag 5963
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>emb|BX548003.29| Zebrafish DNA sequence from clone DKEY-97I5 in linkage group 9,
             complete sequence
          Length = 145468

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   gtataacaaaatgaaatgaca 351
             |||||||||||||||||||||
Sbjct: 78066 gtataacaaaatgaaatgaca 78086
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>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence
          Length = 116075

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 607   tttggcattctgtccacctcc 627
             |||||||||||||||||||||
Sbjct: 83096 tttggcattctgtccacctcc 83076
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>gb|BC097349.1| Rattus norvegicus similar to RIKEN cDNA 3010027G13, mRNA (cDNA
           clone MGC:114363 IMAGE:7460172), complete cds
          Length = 1473

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 ccaacagatgtctgctctttc 127
           |||||||||||||||||||||
Sbjct: 875 ccaacagatgtctgctctttc 855
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>gb|BC081862.1| Rattus norvegicus similar to RIKEN cDNA 3010027G13, mRNA (cDNA
           clone IMAGE:7193229)
          Length = 1391

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 ccaacagatgtctgctctttc 127
           |||||||||||||||||||||
Sbjct: 792 ccaacagatgtctgctctttc 772
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>ref|NM_001024792.1| Rattus norvegicus similar to RIKEN cDNA 3010027G13 (RGD1306193),
           mRNA
          Length = 1473

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 ccaacagatgtctgctctttc 127
           |||||||||||||||||||||
Sbjct: 875 ccaacagatgtctgctctttc 855
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>ref|NM_001003006.1| Canis familiaris T-box 4 (TBX4), mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 620  ccacctccttccagagggag 639
            ||||||||||||||||||||
Sbjct: 1556 ccacctccttccagagggag 1575
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>gb|AY185178.1|AH012458S4 Canis familiaris transcription factor Tbx4 (Tbx4) gene, exon 8 and
            complete cds
          Length = 2283

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 620  ccacctccttccagagggag 639
            ||||||||||||||||||||
Sbjct: 1097 ccacctccttccagagggag 1116
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>gb|BC070931.1| Rattus norvegicus vacuolar protein sorting 4a (yeast), mRNA (cDNA
           clone MGC:91460 IMAGE:7096867), complete cds
          Length = 1590

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 99  atgaaatgacaacgtcaacc 118
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>ref|XM_870492.1| PREDICTED: Bos taurus similar to vacuolar protein sorting 4a
           (LOC618168), mRNA
          Length = 3396

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 131 atgaaatgacaacgtcaacc 150
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>gb|AC126029.3| Mus musculus BAC clone RP23-389K5 from chromosome 19, complete sequence
          Length = 212472

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atgctagttctggggagatg 36
             ||||||||||||||||||||
Sbjct: 20096 atgctagttctggggagatg 20115
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>gb|AC124362.3| Mus musculus BAC clone RP24-528N1 from chromosome 13, complete sequence
          Length = 173382

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   atgaaatgacaacgtcaacc 360
             ||||||||||||||||||||
Sbjct: 78633 atgaaatgacaacgtcaacc 78614
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>ref|XM_536805.2| PREDICTED: Canis familiaris similar to vacuolar protein sorting 4a
           (LOC479674), mRNA
          Length = 2233

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 136 atgaaatgacaacgtcaacc 155
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>gb|BC047932.1| Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae),
           mRNA (cDNA clone MGC:49835 IMAGE:5753632), complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 102 atgaaatgacaacgtcaacc 121
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>gb|BC113224.1| Bos taurus similar to vacuolar protein sorting 4a, mRNA (cDNA clone
           MGC:137836 IMAGE:8086536), complete cds
          Length = 2148

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 124 atgaaatgacaacgtcaacc 143
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>ref|NM_013245.2| Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae)
           (VPS4A), mRNA
          Length = 2211

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 124 atgaaatgacaacgtcaacc 143
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>emb|Z69086.1|SPAC3H8 S.pombe chromosome I cosmid c3H8
          Length = 25329

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   atgtctgctctttcgacctt 133
             ||||||||||||||||||||
Sbjct: 12987 atgtctgctctttcgacctt 13006
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   accggtcagggcgaggcaga 390
             ||||||||||||||||||||
Sbjct: 83351 accggtcagggcgaggcaga 83370
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>emb|BX470095.12| Zebrafish DNA sequence from clone DKEY-162H1 in linkage group 24,
              complete sequence
          Length = 209513

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      attattaatacagtatgcta 22
              ||||||||||||||||||||
Sbjct: 165556 attattaatacagtatgcta 165575
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>gb|AC021118.6| Homo sapiens BAC clone RP11-332D24 from 4, complete sequence
          Length = 194612

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    tgctgaacaagacagaataa 82
             ||||||||||||||||||||
Sbjct: 18908 tgctgaacaagacagaataa 18889
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>gb|AF132747.1| Homo sapiens SKD2 protein mRNA, complete cds
          Length = 2191

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 132 atgaaatgacaacgtcaacc 151
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>dbj|AK159117.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420002G08 product:vacuolar protein
           sorting 4a (yeast), full insert sequence
          Length = 2101

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 167 atgaaatgacaacgtcaacc 186
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>dbj|AK169949.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630005E18
           product:vacuolar protein sorting 4a (yeast), full insert
           sequence
          Length = 2062

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 129 atgaaatgacaacgtcaacc 148
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>gb|AC026464.7| Homo sapiens chromosome 16 clone RP11-343C2, complete sequence
          Length = 190185

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   atgaaatgacaacgtcaacc 360
             ||||||||||||||||||||
Sbjct: 36627 atgaaatgacaacgtcaacc 36646
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>ref|NM_001018398.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3H8.06),
           partial mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 atgtctgctctttcgacctt 133
           ||||||||||||||||||||
Sbjct: 1   atgtctgctctttcgacctt 20
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>dbj|AK047821.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130001H24 product:vacuolar protein
           sorting protein 4a, full insert sequence
          Length = 2086

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 153 atgaaatgacaacgtcaacc 172
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>gb|AF255952.1|AF255952 Homo sapiens vacuolar protein sorting VPS4-1 (VPS4-1) gene,
           complete cds
          Length = 2211

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 124 atgaaatgacaacgtcaacc 143
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>gb|AC026474.7| Homo sapiens chromosome 16 clone RP11-70O5, complete sequence
          Length = 196220

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    atgaaatgacaacgtcaacc 360
              ||||||||||||||||||||
Sbjct: 107069 atgaaatgacaacgtcaacc 107050
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>gb|AF282903.1| Homo sapiens vacuolar protein sorting factor 4A (VPS4A) gene,
            complete cds
          Length = 17315

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  atgaaatgacaacgtcaacc 360
            ||||||||||||||||||||
Sbjct: 1710 atgaaatgacaacgtcaacc 1729
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>gb|AF530161.1| Mus musculus vacuolar protein sorting factor VPS4a gene, complete
           cds
          Length = 16742

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 785 atgaaatgacaacgtcaacc 804
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>gb|AY185179.1| Canis familiaris transcription factor Tbx4 (Tbx4) mRNA, complete cds
          Length = 1665

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 620  ccacctccttccagagggag 639
            ||||||||||||||||||||
Sbjct: 1490 ccacctccttccagagggag 1509
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>gb|AC134563.5| Mus musculus BAC clone RP24-179M18 from chromosome 19, complete sequence
          Length = 163878

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     atgctagttctggggagatg 36
              ||||||||||||||||||||
Sbjct: 157261 atgctagttctggggagatg 157280
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>gb|AF112215.1|AF112215 Homo sapiens SKD1 protein mRNA, complete cds
          Length = 2138

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 79  atgaaatgacaacgtcaacc 98
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>gb|BC018368.1| Mus musculus vacuolar protein sorting 4a (yeast), mRNA (cDNA clone
           MGC:11698 IMAGE:3963907), complete cds
          Length = 2089

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 141 atgaaatgacaacgtcaacc 160
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>gb|AF159063.1|AF159063 Homo sapiens SKD1-homolog mRNA, complete cds
          Length = 2194

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 124 atgaaatgacaacgtcaacc 143
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>emb|BX004786.8| Zebrafish DNA sequence from clone DKEY-1P6 in linkage group 24, complete
              sequence
          Length = 178232

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      attattaatacagtatgcta 22
              ||||||||||||||||||||
Sbjct: 123359 attattaatacagtatgcta 123378
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>ref|NM_126165.1| Mus musculus vacuolar protein sorting 4a (yeast) (Vps4a), mRNA
          Length = 2089

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 atgaaatgacaacgtcaacc 360
           ||||||||||||||||||||
Sbjct: 141 atgaaatgacaacgtcaacc 160
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>gb|AC123868.4| Mus musculus BAC clone RP23-129K6 from 8, complete sequence
          Length = 174224

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   atgaaatgacaacgtcaacc 360
             ||||||||||||||||||||
Sbjct: 55628 atgaaatgacaacgtcaacc 55647
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>gb|AC162441.11| Mus musculus chromosome 1, clone RP23-2E23, complete sequence
          Length = 225487

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 620    ccacctccttccagagggag 639
              ||||||||||||||||||||
Sbjct: 143520 ccacctccttccagagggag 143539
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>dbj|AB000821.1| Schizosaccharomyces pombe gene for Aur1, complete cds
          Length = 2385

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 atgtctgctctttcgacctt 133
           ||||||||||||||||||||
Sbjct: 336 atgtctgctctttcgacctt 355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,872,893
Number of Sequences: 3902068
Number of extensions: 5872893
Number of successful extensions: 112241
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112062
Number of HSP's gapped (non-prelim): 165
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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