ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3n12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10... 31 4.1
2ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 7.0
3PA2D_AGKRH (Q9PVF4) Phospholipase A2 W6D49 precursor (EC 3.1.1.4... 30 9.1

>YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10 in chromosome|
           III (EC 3.6.1.-)
          Length = 1148

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
 Frame = -1

Query: 268 RWHDSVVGTSR--VPRLSALHQDRRNRKSFRSGIDSCNHGYHLYRS--YQ-----CDPAV 116
           R +DS+ G SR  V R+S    D+R   + R+G  S  H Y LY S  YQ      DP +
Sbjct: 631 RLYDSITGVSRFAVCRISQASGDQR---AGRAGRISAGHAYRLYSSAVYQDFVKFADPEI 687

Query: 115 LS 110
           LS
Sbjct: 688 LS 689



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>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 575 RNLNDASPAQRPCDPSSYHESSD 643
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>PA2D_AGKRH (Q9PVF4) Phospholipase A2 W6D49 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 137

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 46  LTG*CTTRSLFIYLHSGVALGNSEQQDHIDNCDTDDSHGCNYRSLI------ESFSYSSG 207
           +TG   T++  +Y  +   +   + +D  D C  D  H C Y+ L       ES+SY   
Sbjct: 28  MTGKEATKNYGMYGCNCGPMKRGKPKDATDQCCAD--HDCCYKKLTDCDPKKESYSYKFE 85

Query: 208 PGEVLKGE 231
            GE+L GE
Sbjct: 86  KGEILCGE 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,965,387
Number of Sequences: 219361
Number of extensions: 1788728
Number of successful extensions: 3929
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3928
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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