ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3n09 |
|---|---|
| Clone Library Name | barley_pub |
>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;| Saposin B; Saposin C; Saposin D] Length = 518 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Frame = -3 Query: 603 CRDNALLSGVRSESTCVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI--EGHEQQCK 430 C+ N + C C L+ V LKD E EI L K C+ + +G +CK Sbjct: 49 CQQNVWSKPAVNSIPCDLCKELVTVVGKVLKDNGTEDEIRSYLEKRCEFLPDQGLASECK 108 Query: 429 RLVLQYIPLIL-VNGEKFLEKNDICTIVQACDAGKKTVLGSFSEEGLLRDE*RQKDYTEP 253 +V Y+P+I+ + E+F + +C+ + C + +K + ++ L ++ + D++E Sbjct: 109 EIVDSYLPVIMDMIKEEFDKPEVVCSALSLCQSLQKHLAAMKLQKQLQSNKIPELDFSEL 168 Query: 252 RKP 244 P Sbjct: 169 TSP 171 Score = 37.0 bits (84), Expect = 0.047 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI-EGHEQQCKRLVLQYIPLILVNGEK 382 C C ++ +L+ EI +L K C + E QC + V QY P+++ + Sbjct: 403 CDICKMIVAYADKELEKNATTTEIEALLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAE 462 Query: 381 FLEKNDICTIVQACDAGKKTVLG 313 ++ +CT + C A KK +LG Sbjct: 463 MMDPTFVCTKLGVCGAAKKPLLG 485
>SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 554 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI-EGHEQQCKRLVLQYIPLILVNGEK 382 C C L+ + L+ + EI+ L K C + + +++QC V +Y PL+L + Sbjct: 439 CEVCKKLVIYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDEFVAEYEPLLLEILVE 498 Query: 381 FLEKNDICTIVQACDAGKKTVLGS 310 ++ + +C+ + C + K +LG+ Sbjct: 499 VMDPSFVCSKIGVCPSAYKLLLGT 522 Score = 37.0 bits (84), Expect = 0.047 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKIEGH--EQQCKRLVLQYIPLIL--VN 391 C C ++ E + LKD E EI+ L K C I CK +V Y+P+IL + Sbjct: 63 CDICKTVVTEAGNLLKDNATEEEILHYLEKTCAWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 390 GEKFLEKNDICTIVQACDA 334 GE ++C+ + C + Sbjct: 123 GE-MSNPGEVCSALNLCQS 140
>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B-Val; Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta- Length = 524 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI-EGHEQQCKRLVLQYIPLILVNGEK 382 C C L+ + L+ + EI+ L K C + + +++QC + V +Y P+++ + Sbjct: 409 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVE 468 Query: 381 FLEKNDICTIVQACDAGKKTVLGS 310 ++ + +C + AC + K +LG+ Sbjct: 469 VMDPSFVCLKIGACPSAHKPLLGT 492 Score = 36.2 bits (82), Expect = 0.080 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI--EGHEQQCKRLVLQYIPLIL--VN 391 C C ++ LKD E EI+ L K C + CK +V Y+P+IL + Sbjct: 63 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 122 Query: 390 GEKFLEKNDICTIVQACDAGKKTVLGSFSEEGLLRDE*RQKDYTEPRKP 244 GE ++C+ + C++ +K + ++ L ++ + D TE P Sbjct: 123 GE-MSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAP 170
>SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta-glucosidase) (A Length = 525 Score = 37.4 bits (85), Expect = 0.036 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI-EGHEQQCKRLVLQYIPLILVNGEK 382 C C L+ + L+ + +I+ L K C + + + +QC + V +Y P+++ + Sbjct: 410 CEVCKKLVGYLDRNLEKNSTKEQILAALEKGCSFLPDQYRKQCDQFVTEYEPVLIEILVE 469 Query: 381 FLEKNDICTIVQACDAGKKTVLGS 310 ++ + +C + AC A K +LG+ Sbjct: 470 VMDPSFVCLKIGACPAAHKPLLGA 493 Score = 33.5 bits (75), Expect = 0.52 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKIE--GHEQQCKRLVLQYIPLIL--VN 391 C C ++ + LKD E EI+ L + C + CK +V Y+P+IL + Sbjct: 63 CDICKDVITAAGNLLKDNATEQEILMYLERTCDWLPKPNMSASCKEIVDSYLPVILDMIK 122 Query: 390 GEKFLEKNDICTIVQACDAGKK 325 G+ ++C+ + C++ +K Sbjct: 123 GQ-MSHPGEVCSALNLCESLQK 143
>SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 557 Score = 36.6 bits (83), Expect = 0.061 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKI-EGHEQQCKRLVLQYIPLILVNGEK 382 C C L+ + L+ + EI+ L K C + + +++QC V +Y PL+L + Sbjct: 442 CEVCKKLVLYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDDFVAEYEPLLLEILVE 501 Query: 381 FLEKNDICTIVQACDAGKKTVLGS 310 ++ +C+ + C + K +LG+ Sbjct: 502 VMDPGFVCSKIGVCPSAYKLLLGT 525 Score = 36.6 bits (83), Expect = 0.061 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = -3 Query: 558 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECKKIEGH--EQQCKRLVLQYIPLIL--VN 391 C C ++ E + LKD + EI+ L K C+ I CK +V Y+P+IL + Sbjct: 63 CDICKTVVTEAGNLLKDNATQEEILHYLEKTCEWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 390 GEKFLEKNDICTIVQACDA 334 GE ++C+ + C + Sbjct: 123 GE-MSNPGEVCSALNLCQS 140
>OXAA_DEIRA (Q9RSH5) Membrane protein oxaA| Length = 428 Score = 33.9 bits (76), Expect = 0.40 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +1 Query: 184 ASRILDTYVQQEELVHYVSSGFTRLGVVFLPSFIAQQTLL 303 A+ L+ Y + EL+H SG+T L +F P+F Q +LL Sbjct: 159 ATSSLEVYGGKNELIHLYQSGYTELPGLFQPNFFGQISLL 198
>NF1_RAT (P97526) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2820 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -3 Query: 543 HLMDEVLSKLKDPDAEFEII-----QILLKECKKIEGHEQQCKRLVLQYIPLILVNGEKF 379 H +D + L +PDA E Q+L CKK+ H+ +L+++ IL+ KF Sbjct: 553 HQLDSI--DLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKF 610 Query: 378 LEKN 367 L KN Sbjct: 611 LLKN 614
>NF1_HUMAN (P21359) Neurofibromin (Neurofibromatosis-related protein NF-1)| [Contains: Neurofibromin truncated] Length = 2839 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -3 Query: 543 HLMDEVLSKLKDPDAEFEII-----QILLKECKKIEGHEQQCKRLVLQYIPLILVNGEKF 379 H +D + L +PDA E Q+L CKK+ H+ +L+++ IL+ KF Sbjct: 553 HQLDSI--DLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKF 610 Query: 378 LEKN 367 L KN Sbjct: 611 LLKN 614
>NF1_MOUSE (Q04690) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2841 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -3 Query: 543 HLMDEVLSKLKDPDAEFEII-----QILLKECKKIEGHEQQCKRLVLQYIPLILVNGEKF 379 H +D + L +PDA E Q+L CKK+ H+ +L+++ IL+ KF Sbjct: 553 HQLDSI--DLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKF 610 Query: 378 LEKN 367 L KN Sbjct: 611 LLKN 614
>SYP32_ARATH (Q9LK09) Syntaxin-32 (AtSYP32)| Length = 347 Score = 29.6 bits (65), Expect = 7.5 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +1 Query: 139 IIQSIQRMQQQHAAKASRILDTYVQ-QEELVHYVSSGFTRLGVVF--LPSFIAQQ 294 ++Q Q+ QQQ + + DTY+Q + E +H V S L +F L + ++QQ Sbjct: 235 LLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQ 289
>SEN54_SCHPO (O74908) Probable tRNA-splicing endonuclease subunit sen54| (tRNA-intron endonuclease sen54) Length = 384 Score = 29.6 bits (65), Expect = 7.5 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 382 VPREERYMHHRSSMRCWQKDGARVILRGGFAA 287 +P E Y+ R SM CW ++G + L+ ++A Sbjct: 120 LPEETLYLVERGSMECWSEEGLPMSLQAVYSA 151
>GLRX1_YEAST (P25373) Glutaredoxin-1 (Glutathione-dependent oxidoreductase 1)| Length = 110 Score = 29.6 bits (65), Expect = 7.5 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = -3 Query: 576 VRSESTCVFCHHLMDEVLSKLKDPDAEFEIIQIL-LKECKKIEG--HEQQCKRLVLQYIP 406 V S++ C +CH ++ + KLK P ++ ++Q+ +KE I+ +E +R V P Sbjct: 21 VASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTV----P 76 Query: 405 LILVNGEKFLEKNDI 361 I +NG+ +D+ Sbjct: 77 NIYINGKHIGGNDDL 91
>YGEZ_ECOLI (Q46806) Hypothetical hydrolase ygeZ (EC 3.-.-.-)| Length = 461 Score = 29.3 bits (64), Expect = 9.8 Identities = 23/69 (33%), Positives = 27/69 (39%) Frame = +3 Query: 27 FSIYSLFRYHYKLNTDQVISTTRLQVDIRNCSSYRSLYNTKHPENAAAARSKSQSNFGHL 206 F +Y Y YKLN D+V+ R + T HPEN AA SK Sbjct: 150 FKLY--LTYQYKLNDDEVLQALRRLHE-------SGALTTVHPENDAAIASKRAEFIAAG 200 Query: 207 CTTRRTSAL 233 T R AL Sbjct: 201 LTAPRYHAL 209
>FDHD_BACLD (Q65DY4) Protein fdhD homolog| Length = 263 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/61 (27%), Positives = 36/61 (59%) Frame = -3 Query: 441 QQCKRLVLQYIPLILVNGEKFLEKNDICTIVQACDAGKKTVLGSFSEEGLLRDE*RQKDY 262 QQ ++ ++ ++VNGE+F+ T+V + D+ ++ V+G + EG++R + K + Sbjct: 21 QQEDQMATEFPLTVMVNGEEFV------TLVCSPDSLEELVIGFLASEGVIRFKNEIKRF 74 Query: 261 T 259 T Sbjct: 75 T 75
>DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vulgaris antigen| homolog) Length = 993 Score = 29.3 bits (64), Expect = 9.8 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -3 Query: 456 IEGHEQQCKRLVLQYIPLILVNGEKFLEKNDICT 355 IEG + + K + +P + NG F+E +++CT Sbjct: 671 IEGAQPEDKEITNICVPPVTTNGADFMESSEVCT 704 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,570,431 Number of Sequences: 219361 Number of extensions: 1761568 Number of successful extensions: 4992 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4989 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
