>DFD_DROME (P07548) Homeotic protein deformed|
          Length = 586

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +1

Query: 295 HSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGR--TLATGMHHQLIQRGPSSCY 450
           HS+ P D+      +HH PH   H H    P      A   HHQ    G SS Y
Sbjct: 78  HSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGYSSNY 131

>CBF1_KLULA (P49379) Centromere-binding protein 1 (CBP-1) (Centromere-binding|
           factor 1) (Centromere promoter factor 1)
          Length = 359

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -1

Query: 535 EKKKAVRRGKKQTVETTAD--DTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHA 362
           ++ +A RR  K+ +E T +  D+E  +K  +S  +  +  ADG+   ++ SQ    D   
Sbjct: 159 DEDQAQRRRGKKNIEGTGESNDSERATKIGESGSSNETAGADGSGDREDGSQP---DGTE 215

Query: 361 TAGEEYGDIVVDGETNRLGKRYG 293
              EE G     G   R G++ G
Sbjct: 216 HDDEENGGAGAGGAAPRRGRKPG 238

>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -1

Query: 538 REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDA 368
           +EKK    +  K++ E+T +++   SKA  +  T P+ S +GA     + QA+ + A
Sbjct: 98  KEKKDKKEKKAKKSDESTTEESTSASKATTNGTTTPAASTNGA---YTYKQADALSA 151

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 325 HPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGPSS 444
           H   +HH  H Q H HQQ Q  +T  +  H  L   G S+
Sbjct: 306 HHHHHHHHHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345

>ARP8_SCHPO (Q9US07) Probable actin-related protein 8|
          Length = 620

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 511 GKKQTVETTADDTEGTSKAADSKRTGPSESADG--ASQLQEFSQAETVDAH 365
           G+K   ET ++   G +K  DSK++   E  DG   S+L E    +T+  H
Sbjct: 9   GEKDAKETESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLH 59

>PVDA_PLAKN (P22545) Duffy receptor alpha form precursor (Erythrocyte-binding|
           protein)
          Length = 1073

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -1

Query: 577 HLQVANATAAAPPREKKKAVRRGKKQTVET-TADDTEGT----SKAADSKRTGPSESADG 413
           H +V  A AAA     + AV     +T  T T ++ EGT    +   D K  GP+ S+D 
Sbjct: 597 HDKVPPAEAAAT----ESAVLHSADKTPNTVTEENKEGTQMDGAAGGDGKAPGPTVSSDV 652

Query: 412 ASQLQEFSQAETVDAHATAGE 350
            S   + S   T  +HA AGE
Sbjct: 653 PSVGGKDSGPSTSASHALAGE 673

>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 23/80 (28%), Positives = 31/80 (38%)
 Frame = -1

Query: 550  AAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVD 371
            A  PR  KK V  G +   E TAD T  + +    K    S   D   Q  E+       
Sbjct: 3330 ADDPRNLKKIVDSGVQTDDEETADRTYASRRRRTKKSVDTSVQTDDEDQ-DEWDMPSRSR 3388

Query: 370  AHATAGEEYGDIVVDGETNR 311
              A  G +YGD   +G+  +
Sbjct: 3389 RKARTG-KYGDSTAEGDKTK 3407

>FIBP_ADE07 (P15141) Fiber protein (pIV)|
          Length = 343

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 256 NYYSSSCYVVKKDHSVFPIDL 318
           NY   +CY    DH+ FPID+
Sbjct: 271 NYIYGTCYYTASDHTAFPIDI 291

>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth|
           arrest-specific homeobox)
          Length = 304

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 265 SSSCYVV--KKDHSVFPIDLFRHPQQYHHTPHRQ*HGHQQFQPGRTLATGMHHQLIQRGP 438
           SSSC +     +  +F     +H + +HH  H   H H Q Q  + L T  H   +   P
Sbjct: 45  SSSCIIAGYPNEEGMFAS---QHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPP 101

Query: 439 SSCYQQL 459
           S+    L
Sbjct: 102 SAARHSL 108

>RPA8_SCHPO (Q9P7P1) DNA-directed RNA polymerase I 17 kDa polypeptide (EC|
           2.7.7.6) (A14) (Nucleolar protein ker1)
          Length = 147

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 538 REKKKAVRRGKKQTVETTADDTEGTSKAADS 446
           +EKKKA RR K++  +  AD T+G  +   S
Sbjct: 117 KEKKKAARREKEEARKAKADTTQGVGEKEQS 147

>SMC2_XENLA (P50533) Structural maintenance of chromosome 2|
           (Chromosome-associated protein E) (Chromosome assembly
           protein XCAP-E)
          Length = 1203

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -1

Query: 538 REKKKAVRRGK-KQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFSQAETVDAHA 362
           ++  KA R  K K+ V++  +D    +K   +K     +  DG S LQE SQ + V+A  
Sbjct: 321 KQNMKAEREKKRKELVKSMEED----AKVLTAKEKEVKKITDGLSSLQEASQKD-VEAFT 375

Query: 361 TAGEEYGDIVVDGETNRLGKRYGLSSRHNKRKN 263
           +A + +  +     +N  G+   L+ +    KN
Sbjct: 376 SAQQHFNAVSAGLSSNEDGEEATLAGQMMACKN 408

>RMT2_YARLI (Q6CBX2) Arginine N-methyltransferase 2 (EC 2.1.1.-)|
          Length = 475

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 27/84 (32%), Positives = 37/84 (44%)
 Frame = -1

Query: 568 VANATAAAPPREKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQEFS 389
           V N   +A  R +    R  K + VE  +DD +      D +     ES DG  +  +  
Sbjct: 142 VYNEIVSAGTRSEVFLRRINKSENVEFLSDDDDEEMDVDDDEE---DESRDG-EETGDIQ 197

Query: 388 QAETVDAHATAGEEYGDIVVDGET 317
           QA   DA   A E   ++VVDGET
Sbjct: 198 QA-IADAIKQAKEAGLEVVVDGET 220

>ADY4_YEAST (Q05955) Accumulates dyads protein 4|
          Length = 493

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 146 NECKKNLLIHHHQTHQPRFPRIVNSKQET 232
           N+C ++L  +H +T+Q R PRI+  K +T
Sbjct: 414 NDCSESLDDYHPRTYQFRHPRIIIDKMKT 442

>TTC16_MOUSE (Q8C1F5) Tetratricopeptide repeat protein 16 (TPR repeat protein|
           16)
          Length = 767

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 568 VANATAAAPP---REKKKAVRRGKKQTVETTADDTEGTSKAADSKRTGPSESADGASQLQ 398
           + NAT   P    R+ KKA +  K +  E   D ++ TS     +   PS+S    S  +
Sbjct: 607 IQNATEVTPAYGQRDSKKATQVPKPKKTEDPKDPSQSTSTTEAPEGPRPSKSRSTLSVKE 666

Query: 397 EFSQAETVDA 368
              +A+ V A
Sbjct: 667 RIRRAKAVRA 676

>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular|
            weight form of myosin I) (HMWMI)
          Length = 1577

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -1

Query: 484  ADDTEGTSKAAD---SKRTGPSESADGASQLQEFSQAETVDAHATAGEEYG 341
            ADDTEG  +A       R  P + A  A   ++ + A    A ATA  +YG
Sbjct: 1431 ADDTEGVIRAGSRPAQARAQPGQQAQPAGAARQQAAAPVQAAAATASYDYG 1481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,513,471
Number of Sequences: 219361
Number of extensions: 1244819
Number of successful extensions: 4236
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4195
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)