ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3m16 |
|---|---|
| Clone Library Name | barley_pub |
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Frame = -3 Query: 592 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 446 P G G P + G+ P Q GL G QG GG G+ + + Sbjct: 479 PSGMQGPSPINMGAVVPQGSRQVPVMQGTGLQGASIQGGSQPGGFSPGQNQVTPQDHEKA 538 Query: 445 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 344 L+ QV+ ++ +QI +LPPEQRQ +L L+E +++ Sbjct: 539 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 572
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Frame = -3 Query: 592 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 446 P G G P + G+ P Q G+ G QG GG G+ + + Sbjct: 479 PSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKA 538 Query: 445 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 344 L+ QV+ ++ +QI +LPPEQRQ +L L+E +++ Sbjct: 539 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 572
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Frame = -3 Query: 592 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 446 P G G P + G+ P Q G+ G QG GG G+ + + Sbjct: 482 PSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQPGGFSPGQSQVTPQDHEKA 541 Query: 445 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 344 L+ QV+ ++ +QI +LPPEQRQ +L L+E +++ Sbjct: 542 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 575
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -3 Query: 571 EPSSAGSHFPGQFQGLPGQ--MAQGIGGIQTGRPEAPLTADMEKMLVQQVMSMSPEQINV 398 +P+SA S P Q +P +Q G G + L+QQ+++++PEQIN Sbjct: 291 QPASATSSPPSVPQKIPSSNHKSQQANGSDQGNEGKRMA------LIQQLLALTPEQINA 344 Query: 397 LPPEQRQQVLQLR 359 LPP QR Q+L +R Sbjct: 345 LPPAQRDQILSIR 357
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Frame = -3 Query: 592 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 446 P G G P + G+ P Q G+ G QG GG G+ + + Sbjct: 474 PSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQGGGQPGGFSPGQNQVTPQDHEKA 533 Query: 445 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 344 L+ QV+ ++ +QI +LPPEQRQ +L L+E +++ Sbjct: 534 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 567
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = -3 Query: 577 GQEPSSAGSHFPGQFQGLPGQMAQGIGGIQT-----GRPEAPLTADMEKMLVQQVMSMSP 413 G + G+ G QG Q A GG Q G+ + + L+ QV+ ++ Sbjct: 545 GMQAGMQGASMQGGMQGAGMQGASKQGGGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTA 604 Query: 412 EQINVLPPEQRQQVLQLREMLRQ 344 +QI +LPPEQRQ +L L+E +++ Sbjct: 605 DQIAMLPPEQRQSILILKEQIQK 627
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = -3 Query: 583 RGGQEPSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAPLTADMEKM-LVQQVMSMSPEQ 407 +GG +PSS PGQ Q P D EK L+ QV+ ++ +Q Sbjct: 554 QGGSQPSSFS---PGQSQVTP--------------------QDQEKAALIMQVLQLTADQ 590 Query: 406 INVLPPEQRQQVLQLREMLRQ 344 I +LPPEQRQ +L L+E +++ Sbjct: 591 IAMLPPEQRQSILILKEQIQK 611
>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 457 Score = 30.4 bits (67), Expect = 4.7 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -3 Query: 643 HVSSHYNSQSMQVDRSAPWGRGGQEPSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAPL 464 H SH++ Q ++D A H+PG +PG +A G +TG +PL Sbjct: 388 HHHSHHHHQPHKMDLKA---------YEQVMHYPGYGSPMPGSLAMGPVTNKTGLDASPL 438 Query: 463 TAD 455 AD Sbjct: 439 AAD 441
>JIP1_HUMAN (Q9UQF2) C-jun-amino-terminal kinase-interacting protein 1| (JNK-interacting protein 1) (JIP-1) (JNK MAP kinase scaffold protein 1) (Islet-brain 1) (IB-1) (Mitogen-activated protein kinase 8-interacting protein 1) Length = 711 Score = 30.0 bits (66), Expect = 6.2 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -3 Query: 592 PWGRGGQEPSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAPLTADM 452 P GQEP+S G GQ QG +QG G T RP+ P T ++ Sbjct: 127 PKAESGQEPASRGQ---GQSQG----QSQGPGSGDTYRPKRPTTLNL 166
>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 765 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -2 Query: 554 LPFPWAIPRSTWTDGPRDWR-HPDGPPRST 468 LP P P T GP+ R HP GPPR+T Sbjct: 673 LPSPPGTPHLTILRGPQSCRLHPHGPPRAT 702
>KREM1_MOUSE (Q99N43) Kremen protein 1 precursor (Kringle-containing protein| marking the eye and the nose) (Kringle domain-containing transmembrane protein 1) (Dickkopf receptor) Length = 473 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = -1 Query: 360 EKCCASDVRDEQLPE*KNQFDRAAWISRVLHARLTPSP*HPPVLATVQADWHP 202 E+ + E + E N AA S+VL+ +TPSP HPP A W P Sbjct: 328 ERPAVNQTLAEVITEQANLSVSAAHSSKVLYV-ITPSPSHPPQTAPGSHSWAP 379
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 492 MPPIPWAICPGRPWNCPGKWEPADDGS*PPRPHGA 596 +PP P PG P PG++ P G PP+ GA Sbjct: 58 LPPYPGTQQPGAP-GAPGQYPPQQPGQYPPQQPGA 91
>PPCKC_BOVIN (Q8HYZ4) Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (EC| 4.1.1.32) (Phosphoenolpyruvate carboxylase) (PEPCK-C) Length = 622 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -3 Query: 439 VQQVMSMSPEQINV-LPPEQRQQVLQLREMLRQ 344 V+++ EQ+NV LPPE + QVL L++ + Q Sbjct: 589 VEEIQKYLEEQVNVDLPPEIKNQVLALKQRISQ 621
>ANTP_DROSU (Q24645) Homeotic protein antennapedia| Length = 394 Score = 29.6 bits (65), Expect = 8.0 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Frame = -3 Query: 631 HYNSQSMQVDRSAPWGRGGQEPSSAGSHFPGQFQGLPGQMAQG-IGGIQTGRPEAPLTAD 455 +YN Q M D+ +G P S S + G M Q G+ TG L A Sbjct: 68 YYNGQGM--DQQQQQHQGYSRPDSPSSQ-------VGGVMPQAQTNGLPTG---GQLVAQ 115 Query: 454 MEKMLVQQVMSMSPEQINVLPPEQRQQVLQ 365 ++ QQ S +P+Q P+Q+QQ LQ Sbjct: 116 QQQQQPQQ-QSQTPQQQQAQQPQQQQQQLQ 144
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 29.6 bits (65), Expect = 8.0 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = -3 Query: 595 APWGRGGQE-----PSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAP 467 AP G G E P+ + + PGQ PG+++ G+G G PE P Sbjct: 931 APAGLGLLEHFLPPPARSPTSSPGQLGQPPGELSPGLGSGPPGTPETP 978
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Frame = -3 Query: 646 SHVSSHYNSQSMQVDRSAPWGRGGQE--PSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPE 473 S +S Y+ +S V P G G P G+ P FQG PG+ + G G P Sbjct: 151 SQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGGSGPMGPPG 210 Query: 472 AP 467 P Sbjct: 211 PP 212 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,802,791 Number of Sequences: 219361 Number of extensions: 2053699 Number of successful extensions: 6074 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6067 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
