ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3m16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 92 3e-15
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
3gb|AC099012.1| Drosophila melanogaster, chromosome 2R, region 56... 48 0.036
4gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57... 48 0.036
5gb|AC005286.1|AC005286 Drosophila melanogaster DNA sequence (P1s... 48 0.036
6gb|BC052572.1| Homo sapiens serum response factor (c-fos serum r... 46 0.14
7ref|XM_860389.1| PREDICTED: Canis familiaris similar to Serum re... 46 0.14
8ref|XM_860372.1| PREDICTED: Canis familiaris similar to Serum re... 46 0.14
9ref|XM_860356.1| PREDICTED: Canis familiaris similar to Serum re... 46 0.14
10ref|XM_847209.1| PREDICTED: Canis familiaris similar to Serum re... 46 0.14
11emb|AL133375.25| Human DNA sequence from clone RP3-330M21 on chr... 46 0.14
12emb|CR595609.1| full-length cDNA clone CS0DK011YH07 of HeLa cell... 46 0.14
13emb|CR594188.1| full-length cDNA clone CS0DB003YH08 of Neuroblas... 46 0.14
14gb|BC048211.1| Homo sapiens serum response factor (c-fos serum r... 46 0.14
15ref|NM_003131.2| Homo sapiens serum response factor (c-fos serum... 46 0.14
16dbj|AB209128.1| Homo sapiens mRNA for serum response factor (c-f... 46 0.14
17gb|J03161.1|HUMSRF Human serum response factor (SRF) mRNA, compl... 46 0.14
18ref|XM_612306.2| PREDICTED: Bos taurus similar to Serum response... 44 0.57
19ref|XM_576514.1| PREDICTED: Rattus norvegicus similar to serum r... 44 0.57
20emb|CR974479.17| Pig DNA sequence from clone PigE-150P18 on chro... 44 0.57
21emb|AL603964.2| Human DNA sequence from clone RP13-13L9 on chrom... 42 2.2
22gb|AC011266.8| Homo sapiens chromosome 18, clone RP11-5A1, compl... 42 2.2
23gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, com... 42 2.2
24ref|XM_632751.1| Dictyostelium discoideum hypothetical protein (... 40 8.8
25gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 8.8
26gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 8.8
27gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome... 40 8.8
28ref|XM_364047.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.8
29gb|AC142270.4| Mus musculus BAC clone RP24-115G23 from chromosom... 40 8.8
30gb|AC140249.2| Mus musculus BAC clone RP24-285O1 from chromosome... 40 8.8
31ref|XM_205324.4| PREDICTED: Mus musculus SLIT and NTRK-like fami... 40 8.8
32ref|XM_989583.1| PREDICTED: Mus musculus SLIT and NTRK-like fami... 40 8.8
33ref|XM_907231.2| PREDICTED: Mus musculus SLIT and NTRK-like fami... 40 8.8
34gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI ... 40 8.8
35gb|AC002310.1|HUAC002310 Human Chromosome 16 BAC clone CIT987SK-... 40 8.8
36gb|AC109805.8| Mus musculus chromosome 3, clone RP23-91D14, comp... 40 8.8
37ref|XM_662478.1| Cryptosporidium hominis TU502 hypothetical prot... 40 8.8
38gb|BC042110.1| Homo sapiens coiled-coil domain containing 78, tr... 40 8.8
39emb|Z98258.1|HS444G9 Human DNA sequence from clone LA16c-444G9 o... 40 8.8
40emb|AL591708.10| Human DNA sequence from clone RP13-634N5 on chr... 40 8.8
41emb|AL163537.11| Human DNA sequence from clone RP11-302C13 on ch... 40 8.8
42gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 8.8
43emb|AL023799.5|HS322P7 Human DNA sequence from clone RP3-322P7 o... 40 8.8
44emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 8.8
45emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome 5, BA... 40 8.8
46emb|AJ720715.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.8
47gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8 40 8.8
48ref|NM_001007840.1| Gallus gallus ring finger protein 185 (RNF18... 40 8.8
49dbj|AK128538.1| Homo sapiens cDNA FLJ46696 fis, clone TRACH3013072 40 8.8
50gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell... 40 8.8
51dbj|AK091831.1| Homo sapiens cDNA FLJ34512 fis, clone HLUNG2006570 40 8.8
52dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 8.8
53ref|NM_001031737.1| Homo sapiens chromosome 16 open reading fram... 40 8.8
54ref|NM_173476.2| Homo sapiens chromosome 16 open reading frame 2... 40 8.8
55gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 8.8
56dbj|AK044761.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 8.8
57dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
58gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, r... 40 8.8
59gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, ... 40 8.8
60gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, com... 40 8.8
61dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.8
62ref|XM_219848.2| PREDICTED: Rattus norvegicus similar to neurona... 40 8.8
63dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 8.8
64dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 8.8
65dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
66dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.8
67dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
68gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 8.8
69gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 ... 40 8.8
70emb|AL831757.5| Mouse DNA sequence from clone RP23-279A21 on chr... 40 8.8 
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
              complete sequence
          Length = 146712

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                          
Query: 365    ctgaagcacctgctgtcgttgttccgggggcagcacgttgatctgctccggcgacatgct 424
              ||||||||| |||||||||||||| || ||||||| ||||||||| || || ||||| ||
Sbjct: 119182 ctgaagcacttgctgtcgttgttctggaggcagcatgttgatctggtcaggtgacatact 119123

                                            
Query: 425    catgacttgctgtactagcattttttccat 454
              || |||||||||||| ||||| ||||||||
Sbjct: 119122 caagacttgctgtacaagcatcttttccat 119093



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                    
Query: 578    accacgcccccatggagctgatctatcgacttgcatactctgggaattgtagtg 631
              ||||||||||||||||| ||||||||| | ||||||||| || |||||||||||
Sbjct: 118876 accacgcccccatggagttgatctatccatttgcatactttgagaattgtagtg 118823
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                            
Query: 365      ctgaagcacctgctgtcgttgttccgggggcagcacgttgatctgctccggcgacatgct 424
                ||||||||| |||||||||||||| || ||||||| ||||||||| || || ||||| ||
Sbjct: 25256341 ctgaagcacttgctgtcgttgttctggaggcagcatgttgatctggtcaggtgacatact 25256282

                                              
Query: 425      catgacttgctgtactagcattttttccat 454
                || |||||||||||| ||||| ||||||||
Sbjct: 25256281 caagacttgctgtacaagcatcttttccat 25256252



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 578      accacgcccccatggagctgatctatcgacttgcatactctgggaattgtagtg 631
                ||||||||||||||||| ||||||||| | ||||||||| || |||||||||||
Sbjct: 25256035 accacgcccccatggagttgatctatccatttgcatactttgagaattgtagtg 25255982
to top
>gb|AC099012.1| Drosophila melanogaster, chromosome 2R, region 56F-57X, BAC clone
             BACR23F24, complete sequence
          Length = 183592

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 16    ccgtgccagtggcagcagcagcag 39
             ||||||||||||||||||||||||
Sbjct: 61859 ccgtgccagtggcagcagcagcag 61836
to top
>gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57 of 73 of the complete
              sequence
          Length = 271902

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 16     ccgtgccagtggcagcagcagcag 39
              ||||||||||||||||||||||||
Sbjct: 156120 ccgtgccagtggcagcagcagcag 156097
to top
>gb|AC005286.1|AC005286 Drosophila melanogaster DNA sequence (P1s DS01995 (D179), DS03499
             (D217), and DS08132 (D174)), complete sequence
          Length = 173970

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 16    ccgtgccagtggcagcagcagcag 39
             ||||||||||||||||||||||||
Sbjct: 68233 ccgtgccagtggcagcagcagcag 68210
to top
>gb|BC052572.1| Homo sapiens serum response factor (c-fos serum response
            element-binding transcription factor), mRNA (cDNA clone
            MGC:59837 IMAGE:6462845), complete cds
          Length = 4230

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 1924 atcccttgggccatctgtccagg 1902
to top
>ref|XM_860389.1| PREDICTED: Canis familiaris similar to Serum response factor (SRF),
            transcript variant 5 (LOC612861), mRNA
          Length = 4401

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 2130 atcccttgggccatctgtccagg 2108
to top
>ref|XM_860372.1| PREDICTED: Canis familiaris similar to Serum response factor (SRF),
            transcript variant 4 (LOC612861), mRNA
          Length = 3384

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 1113 atcccttgggccatctgtccagg 1091
to top
>ref|XM_860356.1| PREDICTED: Canis familiaris similar to Serum response factor (SRF),
            transcript variant 3 (LOC612861), mRNA
          Length = 2450

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 2289 atcccttgggccatctgtccagg 2267
to top
>ref|XM_847209.1| PREDICTED: Canis familiaris similar to Serum response factor (SRF),
            transcript variant 2 (LOC612861), mRNA
          Length = 4398

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 2127 atcccttgggccatctgtccagg 2105
to top
>emb|AL133375.25| Human DNA sequence from clone RP3-330M21 on chromosome 6 Contains the
            3' end of the SRF gene for serum response factor (c-fos
            serum response element-binding transcription factor), a
            gene for a novel protein (KIAA0076 KIAA0708), the gene
            for a putative c-Myc-responsive protein (RCL), the gene
            for KIAA1855 protein and CpG islands, complete sequence
          Length = 117071

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 1512 atcccttgggccatctgtccagg 1490
to top
>emb|CR595609.1| full-length cDNA clone CS0DK011YH07 of HeLa cells Cot 25-normalized
            of Homo sapiens (human)
          Length = 2399

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 1763 atcccttgggccatctgtccagg 1741
to top
>emb|CR594188.1| full-length cDNA clone CS0DB003YH08 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 2923

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 501 atcccttgggccatctgtccagg 523
           |||||||||||||||||||||||
Sbjct: 662 atcccttgggccatctgtccagg 640
to top
>gb|BC048211.1| Homo sapiens serum response factor (c-fos serum response
            element-binding transcription factor), mRNA (cDNA clone
            MGC:52246 IMAGE:5808348), complete cds
          Length = 2505

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 1760 atcccttgggccatctgtccagg 1738
to top
>ref|NM_003131.2| Homo sapiens serum response factor (c-fos serum response
            element-binding transcription factor) (SRF), mRNA
          Length = 4343

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 2037 atcccttgggccatctgtccagg 2015
to top
>dbj|AB209128.1| Homo sapiens mRNA for serum response factor (c-fos serum response
            element-binding transcription factor) variant protein
          Length = 5672

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 5220 atcccttgggccatctgtccagg 5198
to top
>gb|J03161.1|HUMSRF Human serum response factor (SRF) mRNA, complete cds
          Length = 4201

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 501  atcccttgggccatctgtccagg 523
            |||||||||||||||||||||||
Sbjct: 1920 atcccttgggccatctgtccagg 1898
to top
>ref|XM_612306.2| PREDICTED: Bos taurus similar to Serum response factor (SRF)
            (LOC533039), mRNA
          Length = 4079

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 502  tcccttgggccatctgtccagg 523
            ||||||||||||||||||||||
Sbjct: 1785 tcccttgggccatctgtccagg 1764
to top
>ref|XM_576514.1| PREDICTED: Rattus norvegicus similar to serum response factor
            (LOC501099), mRNA
          Length = 4128

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 502  tcccttgggccatctgtccagg 523
            ||||||||||||||||||||||
Sbjct: 1900 tcccttgggccatctgtccagg 1879
to top
>emb|CR974479.17| Pig DNA sequence from clone PigE-150P18 on chromosome 7, complete
             sequence
          Length = 152730

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 502   tcccttgggccatctgtccagg 523
             ||||||||||||||||||||||
Sbjct: 32264 tcccttgggccatctgtccagg 32243
to top
>emb|AL603964.2| Human DNA sequence from clone RP13-13L9 on chromosome 6, complete
            sequence
          Length = 26986

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   ccagtggcagcagcagcagtt 41
            |||||||||||||||||||||
Sbjct: 3977 ccagtggcagcagcagcagtt 3997
to top
>gb|AC011266.8| Homo sapiens chromosome 18, clone RP11-5A1, complete sequence
          Length = 167191

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 505    cttgggccatctgtccaggta 525
              |||||||||||||||||||||
Sbjct: 144646 cttgggccatctgtccaggta 144666
to top
>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence
          Length = 210849

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   cttgggccatctgtccaggta 525
             |||||||||||||||||||||
Sbjct: 22277 cttgggccatctgtccaggta 22297
to top
>ref|XM_632751.1| Dictyostelium discoideum hypothetical protein (DDB0186915), partial
           mRNA
          Length = 1356

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  cagtggcagcagcagcagtt 41
           ||||||||||||||||||||
Sbjct: 853 cagtggcagcagcagcagtt 834
to top
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 96     caaacaactccctataaattacatatccaaac 127
              |||| |||||||||  ||||||||||||||||
Sbjct: 783090 caaataactccctagtaattacatatccaaac 783059
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    agctgaagcacctgctgtcg 382
              ||||||||||||||||||||
Sbjct: 886105 agctgaagcacctgctgtcg 886124
to top
>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence
          Length = 245260

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    acttgctgtactagcatttt 448
              ||||||||||||||||||||
Sbjct: 189806 acttgctgtactagcatttt 189787
to top
>ref|XM_364047.1| Magnaporthe grisea 70-15 hypothetical protein (MG08892.4) partial
           cds
          Length = 1518

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 411 tccggcgacatgctcatgac 430
           ||||||||||||||||||||
Sbjct: 631 tccggcgacatgctcatgac 650
to top
>gb|AC142270.4| Mus musculus BAC clone RP24-115G23 from chromosome 3, complete sequence
          Length = 170870

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aaccacattcccaaagcatg 188
             ||||||||||||||||||||
Sbjct: 74170 aaccacattcccaaagcatg 74151
to top
>gb|AC140249.2| Mus musculus BAC clone RP24-285O1 from chromosome 12, complete sequence
          Length = 160337

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    acttgctgtactagcatttt 448
              ||||||||||||||||||||
Sbjct: 145330 acttgctgtactagcatttt 145349
to top
>ref|XM_205324.4| PREDICTED: Mus musculus SLIT and NTRK-like family, member 2
          (Slitrk2), mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 ccagtggcagcagcagcagt 40
          ||||||||||||||||||||
Sbjct: 40 ccagtggcagcagcagcagt 21
to top
>ref|XM_989583.1| PREDICTED: Mus musculus SLIT and NTRK-like family, member 2
          (Slitrk2), mRNA
          Length = 2950

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 ccagtggcagcagcagcagt 40
          ||||||||||||||||||||
Sbjct: 40 ccagtggcagcagcagcagt 21
to top
>ref|XM_907231.2| PREDICTED: Mus musculus SLIT and NTRK-like family, member 2
          (Slitrk2), mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 ccagtggcagcagcagcagt 40
          ||||||||||||||||||||
Sbjct: 40 ccagtggcagcagcagcagt 21
to top
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila
              melanogaster library) complete sequence
          Length = 166613

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ccagtggcagcagcagcagt 40
              ||||||||||||||||||||
Sbjct: 122428 ccagtggcagcagcagcagt 122409
to top
>gb|AC002310.1|HUAC002310 Human Chromosome 16 BAC clone CIT987SK-A-635H12, complete sequence
          Length = 120955

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   ccttgggccatctgtccagg 523
             ||||||||||||||||||||
Sbjct: 28368 ccttgggccatctgtccagg 28387
to top
>gb|AC109805.8| Mus musculus chromosome 3, clone RP23-91D14, complete sequence
          Length = 171006

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aaccacattcccaaagcatg 188
             ||||||||||||||||||||
Sbjct: 72282 aaccacattcccaaagcatg 72263
to top
>ref|XM_662478.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40067)
            partial mRNA
          Length = 5433

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  attccacaaccacattccca 181
            ||||||||||||||||||||
Sbjct: 3700 attccacaaccacattccca 3719
to top
>gb|BC042110.1| Homo sapiens coiled-coil domain containing 78, transcript variant
          1, mRNA (cDNA clone MGC:50726 IMAGE:5177109), complete
          cds
          Length = 1693

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 18 gtgccagtggcagcagcagc 37
          ||||||||||||||||||||
Sbjct: 12 gtgccagtggcagcagcagc 31
to top
>emb|Z98258.1|HS444G9 Human DNA sequence from clone LA16c-444G9 on chromosome 16, complete
            sequence
          Length = 28835

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   gtgccagtggcagcagcagc 37
            ||||||||||||||||||||
Sbjct: 8114 gtgccagtggcagcagcagc 8095
to top
>emb|AL591708.10| Human DNA sequence from clone RP13-634N5 on chromosome Xq21.1-21.22,
             complete sequence
          Length = 93667

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgccagtggcagcagcagca 38
             ||||||||||||||||||||
Sbjct: 11035 tgccagtggcagcagcagca 11054
to top
>emb|AL163537.11| Human DNA sequence from clone RP11-302C13 on chromosome 13 Contains
             part of the GPC5 gene for glypican 5 and a novel gene
             similar to fatty acid binding protein 5
             (psoriasis-associated), complete sequence
          Length = 58262

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   caactccctataaattacat 119
             ||||||||||||||||||||
Sbjct: 14482 caactccctataaattacat 14501
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    ttcttctactcgggcagctgctcg 331
              |||||| |||||||||||||||||
Sbjct: 842080 ttcttcgactcgggcagctgctcg 842057
to top
>emb|AL023799.5|HS322P7 Human DNA sequence from clone RP3-322P7 on chromosome Xq25-26.2
             Contains the 5' end of a novel gene (FLJ20095) and a CpG
             island, complete sequence
          Length = 93705

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgccagtggcagcagcagca 38
             ||||||||||||||||||||
Sbjct: 39519 tgccagtggcagcagcagca 39500
to top
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      aaaatacatatccaaacaac 103
               ||||||||||||||||||||
Sbjct: 1382807 aaaatacatatccaaacaac 1382788
to top
>emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome 5, BAC clone T6I14 (ESSA project)
          Length = 90472

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tcaaccaccaaaatacatat 94
             ||||||||||||||||||||
Sbjct: 80657 tcaaccaccaaaatacatat 80638
to top
>emb|AJ720715.1| Gallus gallus mRNA for hypothetical protein, clone 23p11
          Length = 2599

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  ccagtggcagcagcagcagt 40
           ||||||||||||||||||||
Sbjct: 178 ccagtggcagcagcagcagt 197
to top
>gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8
          Length = 256073

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     gtgccagtggcagcagcagc 37
              ||||||||||||||||||||
Sbjct: 198681 gtgccagtggcagcagcagc 198662
to top
>ref|NM_001007840.1| Gallus gallus ring finger protein 185 (RNF185), mRNA
          Length = 2599

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  ccagtggcagcagcagcagt 40
           ||||||||||||||||||||
Sbjct: 178 ccagtggcagcagcagcagt 197
to top
>dbj|AK128538.1| Homo sapiens cDNA FLJ46696 fis, clone TRACH3013072
          Length = 3454

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 18 gtgccagtggcagcagcagc 37
          ||||||||||||||||||||
Sbjct: 11 gtgccagtggcagcagcagc 30
to top
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163710

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ccagtggcagcagcagcagt 40
             ||||||||||||||||||||
Sbjct: 83732 ccagtggcagcagcagcagt 83713
to top
>dbj|AK091831.1| Homo sapiens cDNA FLJ34512 fis, clone HLUNG2006570
          Length = 2072

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 18 gtgccagtggcagcagcagc 37
          ||||||||||||||||||||
Sbjct: 9  gtgccagtggcagcagcagc 28
to top
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    gctctatcgaactgattctt 312
              ||||||||||||||||||||
Sbjct: 600774 gctctatcgaactgattctt 600793
to top
>ref|NM_001031737.1| Homo sapiens chromosome 16 open reading frame 25 (C16orf25),
          transcript variant 1, mRNA
          Length = 1693

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 18 gtgccagtggcagcagcagc 37
          ||||||||||||||||||||
Sbjct: 12 gtgccagtggcagcagcagc 31
to top
>ref|NM_173476.2| Homo sapiens chromosome 16 open reading frame 25 (C16orf25),
          transcript variant 2, mRNA
          Length = 3454

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 18 gtgccagtggcagcagcagc 37
          ||||||||||||||||||||
Sbjct: 11 gtgccagtggcagcagcagc 30
to top
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ccagtggcagcagcagcagt 40
             ||||||||||||||||||||
Sbjct: 88328 ccagtggcagcagcagcagt 88347
to top
>dbj|AK044761.1| Mus musculus adult retina cDNA, RIKEN full-length enriched
          library, clone:A930040J07 product:Hypothetical
          leucine-rich repeat/ cysteine-rich flanking region
          (Fragment), full insert sequence
          Length = 2579

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 ccagtggcagcagcagcagt 40
          ||||||||||||||||||||
Sbjct: 41 ccagtggcagcagcagcagt 22
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 20      gccagtggcagcagcagcag 39
               ||||||||||||||||||||
Sbjct: 4937235 gccagtggcagcagcagcag 4937216
to top
>gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, region 48A-48C, BAC clone
             BACR35F01, complete sequence
          Length = 170869

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    gtgccagtggcagcagcagc 37
             ||||||||||||||||||||
Sbjct: 62094 gtgccagtggcagcagcagc 62075
to top
>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone
              BACR38D12, complete sequence
          Length = 171831

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     gtgccagtggcagcagcagc 37
              ||||||||||||||||||||
Sbjct: 102413 gtgccagtggcagcagcagc 102394
to top
>gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, complete sequence
          Length = 185664

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    ccttgggccatctgtccagg 523
              ||||||||||||||||||||
Sbjct: 147741 ccttgggccatctgtccagg 147760
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 403     tgatctgctccggcgacatg 422
               ||||||||||||||||||||
Sbjct: 1572653 tgatctgctccggcgacatg 1572672
to top
>ref|XM_219848.2| PREDICTED: Rattus norvegicus similar to neuronal transmembrane
           protein Slitrk2 (LOC309349), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  ccagtggcagcagcagcagt 40
           ||||||||||||||||||||
Sbjct: 253 ccagtggcagcagcagcagt 234
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 484     ccgtctggatgccgccaatc 503
               ||||||||||||||||||||
Sbjct: 3976298 ccgtctggatgccgccaatc 3976317
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     tctgctccggcgacatgctc 425
               ||||||||||||||||||||
Sbjct: 6477785 tctgctccggcgacatgctc 6477804
to top
>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E04
          Length = 170701

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     gccagtggcagcagcagcag 39
              ||||||||||||||||||||
Sbjct: 124718 gccagtggcagcagcagcag 124699
to top
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
          Length = 79259

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tcaaccaccaaaatacatat 94
             ||||||||||||||||||||
Sbjct: 41399 tcaaccaccaaaatacatat 41380
to top
>dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125L14, full
           insert sequence
          Length = 4166

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  gccagtggcagcagcagcag 39
           ||||||||||||||||||||
Sbjct: 401 gccagtggcagcagcagcag 382
to top
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
              sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     gtgccagtggcagcagcagc 37
              ||||||||||||||||||||
Sbjct: 180586 gtgccagtggcagcagcagc 180567
to top
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete
              sequence
          Length = 285729

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ccagtggcagcagcagcagt 40
              ||||||||||||||||||||
Sbjct: 159014 ccagtggcagcagcagcagt 159033
to top
>emb|AL831757.5| Mouse DNA sequence from clone RP23-279A21 on chromosome X, complete
             sequence
          Length = 85948

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ccagtggcagcagcagcagt 40
             ||||||||||||||||||||
Sbjct: 35889 ccagtggcagcagcagcagt 35870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,377,232
Number of Sequences: 3902068
Number of extensions: 5377232
Number of successful extensions: 109892
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109443
Number of HSP's gapped (non-prelim): 449
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top