ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000302.1| Shewanella denitrificans OS217, complete genome 42 0.82
2emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 3.2
3gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complet... 40 3.2
4ref|XM_315016.2| Anopheles gambiae str. PEST ENSANGP00000022258 ... 40 3.2

>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 188     atggcatgacctgcaaactgg 208
               |||||||||||||||||||||
Sbjct: 2723931 atggcatgacctgcaaactgg 2723951



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>emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 4/11
          Length = 269050

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gattacatcgccttggcgat 54
              ||||||||||||||||||||
Sbjct: 205688 gattacatcgccttggcgat 205669



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>gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complete sequence
          Length = 186896

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    tacaagggtacatggattacatcg 44
             ||||||| ||||||||||||||||
Sbjct: 71441 tacaaggctacatggattacatcg 71418



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>ref|XM_315016.2| Anopheles gambiae str. PEST ENSANGP00000022258
           (ENSANGG00000019769), mRNA
          Length = 820

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 ggtgatggaaccaccgggaa 229
           ||||||||||||||||||||
Sbjct: 501 ggtgatggaaccaccgggaa 482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,369,157
Number of Sequences: 3902068
Number of extensions: 1369157
Number of successful extensions: 22952
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22941
Number of HSP's gapped (non-prelim): 11
length of query: 250
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 228
effective length of database: 17,147,199,772
effective search space: 3909561548016
effective search space used: 3909561548016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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