ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3m07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M ... 30 4.5
2PSTB_PHOPR (Q6LU82) Phosphate import ATP-binding protein pstB (E... 30 5.8
3OL470_MOUSE (Q8VF65) Olfactory receptor 470 (Olfactory receptor ... 30 7.6
4PRAX_MOUSE (O55103) Periaxin 29 10.0
5PRAX_RAT (Q63425) Periaxin 29 10.0
6UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains a... 29 10.0

>LAMA2_HUMAN (P24043) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3110

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -2

Query: 458  KYLYKKIRGERGKEMADLEKTLTRCVNRIDEKIEGIREAGGFCPNRPKLFDSVPK---PL 288
            K L+ + RGE  +   DL + L    N++D+  + +REA        +LF    K    L
Sbjct: 1755 KKLFGESRGENEEMEKDLREKLADYKNKVDDAWDLLREATDKIREANRLFAVNQKNMTAL 1814

Query: 287  KQQKEKVKSG 258
            +++KE V+SG
Sbjct: 1815 EKKKEAVESG 1824



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>PSTB_PHOPR (Q6LU82) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter)
          Length = 272

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 404 EKTLTRCVNRIDEKIEGIREAGGFCPNRPKLFDS 303
           + TL RC+NR++E ++G R  G    +   ++DS
Sbjct: 64  KSTLLRCINRMNELVDGCRVDGKIMLHGQNIYDS 97



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>OL470_MOUSE (Q8VF65) Olfactory receptor 470 (Olfactory receptor 204-22)|
          Length = 314

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +2

Query: 92  LYFYCLYPLPYHYAQAPVLLLLISITMHKRLYFYCFHFPPHIFACQWKYSSKITSLQI*P 271
           + F C+Y +      + +LL+ +S  +H  +YF    F  H+ +    YSS +T   +  
Sbjct: 32  IIFLCIYLVNVSGNLSTILLIRVSSQLHHPMYF----FLSHLASVDVGYSSTVTPKMLAN 87

Query: 272 FLSAASRAS 298
           FL   S  S
Sbjct: 88  FLLERSTIS 96



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>PRAX_MOUSE (O55103) Periaxin|
          Length = 1391

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -2

Query: 293  PLKQQKEKVKSGVK*SLRNISTDMQKCGEGNES 195
            P  Q+ EKV SGVK S   +ST  Q   EG ES
Sbjct: 1050 PGAQETEKVTSGVKPSGLQVSTTGQVVAEGQES 1082



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>PRAX_RAT (Q63425) Periaxin|
          Length = 1383

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 293  PLKQQKEKVKSGVK*SLRNISTDMQKCGEGNESSK 189
            P  Q+ EKV SGVK S   +ST  Q   EG E ++
Sbjct: 1042 PGAQETEKVTSGVKPSGLQVSTTRQVVAEGQEGAQ 1076



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>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
            repeats protein (Nucling) (Nuclear membrane-binding
            protein)
          Length = 1411

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
 Frame = -2

Query: 494  VDSYNTMMPLRQKYLYKKIRGERGKEMADLEKTLTRCVNRIDEKIEGIREAGGFCPNRPK 315
            V+     +PLR   + ++++      + DL K L+    R  EK +   EA        K
Sbjct: 740  VEMKTRYVPLR---VSEEMKRSHDVNVEDLNKKLSEATQRYAEKKQ---EAERLLAENDK 793

Query: 314  LFDSVPK-------PLKQQKEKV--KSGVK*SLRNISTDMQKCGEGNESSKS 186
            L  +V +       P K +KE +  KS +    + +S   +KCGEG E  ++
Sbjct: 794  LTKNVSRLEAVFVAPEKHEKELMGLKSNIAELKKQLSELNKKCGEGQEKIRA 845


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,263,376
Number of Sequences: 219361
Number of extensions: 1941588
Number of successful extensions: 5376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5374
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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