>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
           protein)
          Length = 894

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 377 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 255
           L+A L EMGF DR+ N +LL K+  +I + V +L+     D
Sbjct: 848 LMAHLFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888

>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1|
          Length = 354

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 14/35 (40%), Positives = 26/35 (74%)
 Frame = -1

Query: 374 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 270
           L++L+EMGF D E N + L ++GG+++ A+  L++
Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLS 352

>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
           homolog) (Chap1)
          Length = 638

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
 Frame = -1

Query: 629 TTPAEVPTSLLTSIPVDLTVAATAPVDVASALLDIDRXXXXXXXXXXXEMGFKQVDLNKE 450
           T PA  P S  T IP   TV+++AP +  S   +                          
Sbjct: 533 TGPASSPGSTGTGIPPATTVSSSAPTETISPTSESG------------------------ 568

Query: 449 ILRQNKYNLEQSVDDLCGVNEWDP---------LLAELSEMGFDDRETNKELLAKNGGSI 297
               N+  ++Q V  L G +   P          L +L+ MGF +RE N + L   GG I
Sbjct: 569 ---PNQQFIQQMVQALTGGSPPQPPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDI 625

Query: 296 KRAVMDLIARE 264
             A+  L+  +
Sbjct: 626 NAAIERLLGSQ 636

>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2) (1A1-3B)
          Length = 966

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 377  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 255
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 920  LMARLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960

>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein)
          Length = 983

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 377  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 255
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 937  LMAHLFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977

>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2)
          Length = 988

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 377  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 255
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 942  LMAHLFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982



 Score = 29.6 bits (65), Expect = 9.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 482  MGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWD 381
            MGF    LN  +LR++ YN+ Q V +L  VN  D
Sbjct: 949  MGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982

>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1) (hPLIC-1)
          Length = 589

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -1

Query: 425 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 270
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 526 IQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 585

Query: 269 RE 264
            +
Sbjct: 586 SQ 587

>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -1

Query: 425 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 270
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578

Query: 269 RE 264
            +
Sbjct: 579 SQ 580

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -1

Query: 425 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 270
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578

Query: 269 RE 264
            +
Sbjct: 579 SQ 580

>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2)
           (DSK2 homolog) (Chap1)
          Length = 624

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -1

Query: 437 NKYNLEQSVDDLCGVN---------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 285
           N+  ++Q V  L G N          +   L +L+ MGF +RE N + L   GG I  A+
Sbjct: 556 NQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 615

Query: 284 MDLIARE 264
             L+  +
Sbjct: 616 ERLLGSQ 622

>UBL7_MOUSE (Q91W67) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
          Length = 380

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 392 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 285
           ++W P L +L +MG  D E +   L   GG I+ A+
Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371

>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
           (Bone marrow stromal cell ubiquitin-like protein)
           (BMSC-UbP)
          Length = 380

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 392 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 285
           ++W P L +L +MG  D E +   L   GG I+ A+
Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371

>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)|
          Length = 1591

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 46  GTEQLSRLQQPHAADPPRSQHNKVHTAHRSHT 141
           G+ QLS L Q H  D    + + +H+ H SH+
Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301

>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)|
          Length = 396

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 374 LAELSEMGFDDRETNKELLAKNGGSIKRAV 285
           LAEL +MGF D   N + L+   G+I RA+
Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRAI 228

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 52  EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 141
           +Q S+LQ PH+  PP  QH + H  H+  T
Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 374 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 264
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 563 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 599

>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 596

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 374 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 264
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 558 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594

>SYM_STRR6 (P67581) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 665

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -1

Query: 461 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 282
           LN+ +   NKY   Q    + GV E+D +LAE++E    D  T+ E  A +      AV 
Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426

Query: 281 DLIAREKK 258
            LI+R  K
Sbjct: 427 TLISRTNK 434

>SYM_STRPN (P67580) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 665

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -1

Query: 461 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 282
           LN+ +   NKY   Q    + GV E+D +LAE++E    D  T+ E  A +      AV 
Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426

Query: 281 DLIAREKK 258
            LI+R  K
Sbjct: 427 TLISRTNK 434

>Y3539_METJA (Q60294) Hypothetical UPF0252 protein MJECL39|
          Length = 351

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
 Frame = -2

Query: 241 ELSNTYLSISIYICLNNE-TVCPVVCL*TAVKTCWCD--FCVR-------CELYYVVTVV 92
           E SN Y  I+ +I +     + P V L       WC+  FC+        C LY+++T++
Sbjct: 51  EKSNVYYFITFFIIVGLVWAIFPEVWL-------WCEQVFCISPTIHIIICCLYFIITII 103

Query: 91  GQLRVVAVIG----LVALFLLFNYCEGRPMXL 8
             L +  V+G    L A F   + C+ + + L
Sbjct: 104 LFLFLCGVVGTFLHLWATFFTLSKCDSKILKL 135

>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB|
          Length = 539

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 58  LSRLQQPHAADPPRSQHNK 114
           L R+ +PHA+DPPR  H++
Sbjct: 468 LERMSRPHASDPPRPWHDR 486


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,334,419
Number of Sequences: 219361
Number of extensions: 1857261
Number of successful extensions: 5211
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5206
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)