ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspa... 33 0.65
2AMOT_HUMAN (Q4VCS5) Angiomotin 32 1.9
3ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi... 31 3.2
4ZN533_BRARE (Q6PBT9) Zinc finger protein 533 30 4.2
5PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (... 30 5.5
6MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP) 30 5.5
7SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 9.4
8RBGPR_HUMAN (Q9H2M9) Rab3 GTPase-activating protein non-catalyti... 29 9.4

>T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspan|
           transmembrane protein L6H)
          Length = 197

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 23/92 (25%), Positives = 34/92 (36%)
 Frame = +2

Query: 326 CPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTAANHWGENFLVCSRHTPRGTFAAIPSI 505
           C R     + T+ ++ ++ + L +  NG  +WT  NH      +       G     P I
Sbjct: 6   CARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMVLCPGI 65

Query: 506 AMATIFAGRGCGRRDFTRVVRAXACSCSNNCR 601
           A A    G+GC            A  C N CR
Sbjct: 66  A-AVRAGGKGC----------CGAGCCGNRCR 86



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>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
 Frame = -3

Query: 540  PQPLPAKMVAIAMLGMAANVPLGVWREHTKKFSPQWFAAVHAAVPFIAMLRKSVNMPRTA 361
            P P+ A   A A+   AA +        T   +    A   AA P  A          TA
Sbjct: 884  PAPVAAAATAAAITATAATIT-------TTMVAAAPVAVAAAAAPAAAAAPSPATAAATA 936

Query: 360  MVFTIAASILGQ-----TIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGK 196
               + AA+  GQ     ++ S A        AA     PAA   V  P      + A  +
Sbjct: 937  AAVSPAAA--GQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQ 994

Query: 195  AWDPLALKIPGSANAGAPAPTPS 127
            A  P   + P SA A AP P P+
Sbjct: 995  ASAPAQTQAPTSAPAVAPTPAPT 1017



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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/87 (27%), Positives = 33/87 (37%)
 Frame = -2

Query: 604 PPAIVAARASXRTHNPREVPPSTAPTCKDGSHRNARDGSKRPSRGVA*AHQEILPPVVRS 425
           PP    + ++     P  VP STAP    G   N  DG   P+           PPVV S
Sbjct: 292 PPLPATSASAPAPLVPATVPSSTAPNAAAGGAPNLADGFTSPT-----------PPVVSS 340

Query: 424 SPCRRSVHRDAEEVRQHAQNRDGVHHS 344
           +P           V+ ++ NR    H+
Sbjct: 341 TP------PTGHPVQFYSMNRPASRHT 361



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>ZN533_BRARE (Q6PBT9) Zinc finger protein 533|
          Length = 492

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 291 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 136
           KT+ +  T     T T       + SCSD   K+ +PLA  K+P S  A  PAP
Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245



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>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1338

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 299 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 427
           ++S LDP V  R+  A   T  V  ++TD   +  +G   W A
Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772



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>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)|
          Length = 642

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 228 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 127
           +SG   DA G  + PL    P  A A APAP P+
Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310



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>SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 60  PITYTINRNQYPGRLNSTVR 119
           PI Y +N+NQYPG   S VR
Sbjct: 436 PIWYDVNKNQYPGISESDVR 455



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>RBGPR_HUMAN (Q9H2M9) Rab3 GTPase-activating protein non-catalytic subunit (Rab3|
            GTPase-activating protein 150 kDa subunit) (Rab3-GAP
            p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150)
            (RGAP-iso)
          Length = 1393

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = -3

Query: 600  LQLLLHEQAXARTTLVKSLRPQPLP----AKMVAIAMLGMAANVPLGVWREHTKKFSPQ 436
            LQ LLH +   +T+ V SL+ +PLP     K++     G+A +V   ++++    FSP+
Sbjct: 899  LQTLLHSKGNTQTSKVSSLQAEPLPRLSVKKLLEGGKGGIADSVAKWIFKQ---DFSPE 954


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,074,380
Number of Sequences: 219361
Number of extensions: 1919510
Number of successful extensions: 5789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5767
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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