ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3l24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1700 Score = 264 bits (133), Expect = 3e-67 Identities = 247/285 (86%) Strand = Plus / Minus Query: 271 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 330 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231 Query: 331 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 390 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171 Query: 391 cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 450 |||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1170 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1111 Query: 451 cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 510 |||||||||||||||||||||||||||||||| |||||||||||| || |||| || || Sbjct: 1110 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 1051 Query: 511 ggctaccatctttgcaggtaggggctgtggacggagggacttcac 555 |||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1050 ggctaccatctttgcaggcaggggctggggacggagagacttcac 1006
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 264 bits (133), Expect = 3e-67 Identities = 247/285 (86%) Strand = Plus / Plus Query: 271 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 330 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963 Query: 331 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 390 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023 Query: 391 cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 450 |||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 3216024 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 3216083 Query: 451 cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 510 |||||||||||||||||||||||||||||||| |||||||||||| || |||| || || Sbjct: 3216084 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 3216143 Query: 511 ggctaccatctttgcaggtaggggctgtggacggagggacttcac 555 |||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 3216144 ggctaccatctttgcaggcaggggctggggacggagagacttcac 3216188
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 264 bits (133), Expect = 3e-67 Identities = 247/285 (86%) Strand = Plus / Plus Query: 271 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 330 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953 Query: 331 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 390 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013 Query: 391 cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 450 |||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 131014 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 131073 Query: 451 cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 510 |||||||||||||||||||||||||||||||| |||||||||||| || |||| || || Sbjct: 131074 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 131133 Query: 511 ggctaccatctttgcaggtaggggctgtggacggagggacttcac 555 |||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 131134 ggctaccatctttgcaggcaggggctggggacggagagacttcac 131178
>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full insert sequence Length = 1699 Score = 264 bits (133), Expect = 3e-67 Identities = 247/285 (86%) Strand = Plus / Minus Query: 271 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 330 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230 Query: 331 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 390 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170 Query: 391 cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 450 |||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1169 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1110 Query: 451 cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 510 |||||||||||||||||||||||||||||||| |||||||||||| || |||| || || Sbjct: 1109 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 1050 Query: 511 ggctaccatctttgcaggtaggggctgtggacggagggacttcac 555 |||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1049 ggctaccatctttgcaggcaggggctggggacggagagacttcac 1005
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 264 bits (133), Expect = 3e-67 Identities = 247/285 (86%) Strand = Plus / Plus Query: 271 gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 330 |||||||||||| | | ||||||||| |||||||| ||||| |||||||| || || || Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656 Query: 331 gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 390 | |||||||||||||||||||| |||| || || |||||||||| || || ||||| Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716 Query: 391 cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 450 |||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 25717 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 25776 Query: 451 cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 510 |||||||||||||||||||||||||||||||| |||||||||||| || |||| || || Sbjct: 25777 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 25836 Query: 511 ggctaccatctttgcaggtaggggctgtggacggagggacttcac 555 |||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 25837 ggctaccatctttgcaggcaggggctggggacggagagacttcac 25881
>ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1116 Score = 258 bits (130), Expect = 2e-65 Identities = 244/282 (86%) Strand = Plus / Minus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 837 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 778 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 513 ||||||||||||||||||||| ||||||| |||||||||||| ||||||| || ||||| Sbjct: 777 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 718 Query: 514 taccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 717 taccatctttgcaggcagaggctggggacggagagacttcac 676 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Minus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 229 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999 Query: 230 tctggatacatg 241 | |||||||||| Sbjct: 998 tttggatacatg 987
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 258 bits (130), Expect = 2e-65 Identities = 244/282 (86%) Strand = Plus / Plus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 876492 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 876551 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 513 ||||||||||||||||||||| ||||||| |||||||||||| ||||||| || ||||| Sbjct: 876552 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 876611 Query: 514 taccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 876612 taccatctttgcaggcagaggctggggacggagagacttcac 876653 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Plus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 229 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330 Query: 230 tctggatacatg 241 | |||||||||| Sbjct: 876331 tttggatacatg 876342 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 cttattccacttgtctcaccc 46 ||||||||||||||||||||| Sbjct: 876066 cttattccacttgtctcaccc 876086
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 258 bits (130), Expect = 2e-65 Identities = 244/282 (86%) Strand = Plus / Plus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 57387 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 57446 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 513 ||||||||||||||||||||| ||||||| |||||||||||| ||||||| || ||||| Sbjct: 57447 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 57506 Query: 514 taccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 57507 taccatctttgcaggcagaggctggggacggagagacttcac 57548 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Plus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 229 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225 Query: 230 tctggatacatg 241 | |||||||||| Sbjct: 57226 tttggatacatg 57237 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 cttattccacttgtctcaccc 46 ||||||||||||||||||||| Sbjct: 56961 cttattccacttgtctcaccc 56981
>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full insert sequence Length = 1116 Score = 258 bits (130), Expect = 2e-65 Identities = 244/282 (86%) Strand = Plus / Minus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 573 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 514 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 513 ||||||||||||||||||||| ||||||| |||||||||||| ||||||| || ||||| Sbjct: 513 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 454 Query: 514 taccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 453 taccatctttgcaggcagaggctggggacggagagacttcac 412 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Minus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 229 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735 Query: 230 tctggatacatg 241 | |||||||||| Sbjct: 734 tttggatacatg 723 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cttattccacttgtctcaccc 46 ||||||||||||||||||||| Sbjct: 999 cttattccacttgtctcaccc 979
>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) Length = 11618 Score = 250 bits (126), Expect = 5e-63 Identities = 243/282 (86%) Strand = Plus / Plus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 8580 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 8639 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 513 ||||||||||||||||||||| ||||||| |||||||||||| || |||| || ||||| Sbjct: 8640 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccaagcaacgcaatggc 8699 Query: 514 taccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 8700 taccatctttgcaggcagaggctggggacggagagacttcac 8741 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Plus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 229 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418 Query: 230 tctggatacatg 241 | |||||||||| Sbjct: 8419 tttggatacatg 8430 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 cttattccacttgtctcaccc 46 ||||||||||||||||||||| Sbjct: 8154 cttattccacttgtctcaccc 8174
>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full insert sequence Length = 3418 Score = 250 bits (126), Expect = 5e-63 Identities = 243/282 (86%) Strand = Plus / Minus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 2951 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 2892 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 513 ||||||||||||||||||||| ||||||| |||||||||||| ||||||| || ||||| Sbjct: 2891 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 2832 Query: 514 taccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||||| || ||||| | |||||| |||||||| Sbjct: 2831 taccatctttgcaggcagaggctgggtacggagagacttcac 2790 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Minus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 229 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| | || ||||| Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113 Query: 230 tctggatacatg 241 | |||||||||| Sbjct: 3112 tttggatacatg 3101 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cttattccacttgtctcaccc 46 ||||||||||||||||||||| Sbjct: 3377 cttattccacttgtctcaccc 3357
>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence Length = 1457 Score = 206 bits (104), Expect = 6e-50 Identities = 239/284 (84%) Strand = Plus / Minus Query: 272 ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 331 ||||||||||| || || | |||||||||||||| ||||| ||||| || || || || Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969 Query: 332 aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 391 | |||||||||||||||||||| ||||||| || |||||||| || ||||||||| Sbjct: 968 acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909 Query: 392 agcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttc 451 ||||| || ||||||||||| ||||||||||| ||||| |||||||| || ||||| ||| Sbjct: 908 agcattgcaatgaacggaacagcggcatggacagctgcaaaccactgaggagagaacttc 849 Query: 452 ttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatg 511 ||||||||||| ||||||||||| ||||||| |||||| |||||||| || | ||| ||| Sbjct: 848 ttggtgtgctcccgccacaccccaagagggatgtttgccgccatccccagtagtgcaatg 789 Query: 512 gctaccatctttgcaggtaggggctgtggacggagggacttcac 555 ||||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 788 gctaccatctttgagggcaggggctgtggtcgcagggatttcac 745
>gb|AF192975.1|AF192975 Oryza sativa unknown gene Length = 673 Score = 190 bits (96), Expect = 4e-45 Identities = 193/224 (86%), Gaps = 1/224 (0%) Strand = Plus / Minus Query: 274 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 333 ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180 Query: 334 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 393 |||||||||||||||||||| |||| || || ||||||||||||| || |||||||| Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120 Query: 394 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 453 ||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 119 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 60 Query: 454 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcc 497 ||||||||||||||||||||| ||| ||| |||||||||||||| Sbjct: 59 ggtgtgctcacgccacaccccaagatgga-gtttgctgccatcc 17 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 170 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 216 ||||||| ||| || |||||||| ||||||||||||| ||| ||||| Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294
>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167137 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gagccaggtatcttcagcgca 181 ||||||||||||||||||||| Sbjct: 138713 gagccaggtatcttcagcgca 138693
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gtcggtgcaggagcgccggc 153 |||||||||||||||||||| Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cagcatcgcgatgaacggaa 410 |||||||||||||||||||| Sbjct: 159362 cagcatcgcgatgaacggaa 159343
>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence Length = 52591 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 244 ggtgactgtggcggcgggaccggcggtg 271 |||| |||||||||||||| |||||||| Sbjct: 30448 ggtggctgtggcggcgggagcggcggtg 30475
>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete sequence Length = 201727 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cgaggatggaggctgctatg 349 |||||||||||||||||||| Sbjct: 162615 cgaggatggaggctgctatg 162596 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,545,550 Number of Sequences: 3902068 Number of extensions: 3545550 Number of successful extensions: 60757 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60616 Number of HSP's gapped (non-prelim): 138 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
