ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3l20 |
|---|---|
| Clone Library Name | barley_pub |
>END8_ECOLI (P50465) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +2 Query: 50 QVTVVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 184 Q T V + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 84 QTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_ECOL6 (Q8FJU5) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +2 Query: 50 QVTVVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 184 Q T V + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 84 QTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_ECO57 (Q8X9C6) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +2 Query: 50 QVTVVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 184 Q T V + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 84 QTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 128
>END8_SHIFL (Q83LZ7) Endonuclease VIII (DNA glycosylase/AP lyase Nei) (EC| 3.2.2.-) (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase Nei) Length = 262 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +2 Query: 50 QVTVVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 184 Q T V + + Q + T+ L+ +SD+ ++ P HP L R D Sbjct: 84 QTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPD 128
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 26.6 bits (57), Expect(2) = 9.9 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Frame = +2 Query: 110 QSSDLRIMVP-PHSLQHPLLPRSNADSIARQHTQTPLPH 223 Q SD+ I P PH HP P HT TP PH Sbjct: 13 QYSDIYIHTPHPHPHPHPHTPTHT-----HPHTPTPTPH 46 Score = 21.6 bits (44), Expect(2) = 9.9 Identities = 7/10 (70%), Positives = 7/10 (70%) Frame = +3 Query: 210 HHCHTSHTVL 239 HH HT HT L Sbjct: 63 HHTHTPHTTL 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,706,293 Number of Sequences: 219361 Number of extensions: 1293472 Number of successful extensions: 4700 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4700 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
