ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3l15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEC_LATSP (P16349) Lectin 32 1.6
2FP1_MYTCO (Q25434) Adhesive plaque matrix protein precursor (Foo... 32 2.1
3DGK3_CAEEL (Q03603) Probable diacylglycerol kinase 3 (EC 2.7.1.1... 31 3.5
4TRPB_PROMP (Q7TUH0) Tryptophan synthase beta chain (EC 4.2.1.20) 30 6.0
55HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Sero... 30 7.9

>LEC_LATSP (P16349) Lectin|
          Length = 244

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 13  FDTLHHTPRVPPYMNMTHGSYVNNLAHLLQTYINPHVTTYNCRRITHK 156
           FDT H+ P  P Y+++  G  +N++   +    NPH  TY+   I +K
Sbjct: 131 FDTFHNQPWDPDYIHI--GVDINSIKSRITRPWNPHYDTYSIAYIAYK 176



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>FP1_MYTCO (Q25434) Adhesive plaque matrix protein precursor (Foot protein 1)|
           (MCFP1)
          Length = 872

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
 Frame = +3

Query: 18  YPTPYSQGPT---IYE----YDTRFIRKQF--GTFTPNIHQPPCYNLQ--LPPHYTQDVT 164
           YPTPY Q P+   IY+    Y T +  K+    T+ P I  PP Y  +   PP Y   +T
Sbjct: 598 YPTPYKQKPSYPPIYKSKSSYPTAYKSKKTYPPTYKPKITYPPTYKPKPSYPPSYRPKIT 657

Query: 165 KTDT 176
              T
Sbjct: 658 YPPT 661



 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
 Frame = +3

Query: 18  YPTPYSQGPT---IYE----YDTRFIRKQF--GTFTPNIHQPPCYNLQ--LPPHYTQDVT 164
           YPTPY Q P+   IY+    Y T +  K+    T+ P I  PP Y  +   PP Y    T
Sbjct: 498 YPTPYKQKPSYPPIYKSKSSYPTSYKSKKTYPPTYKPKITYPPTYKPKPSYPPSYKPKTT 557

Query: 165 KTDT 176
              T
Sbjct: 558 YPPT 561



 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
 Frame = +3

Query: 18  YPTPYSQGPT---IYE----YDTRFIRKQF--GTFTPNIHQPPCYNLQ--LPPHYTQDVT 164
           YPTPY Q P+   IY+    Y T +  K+    T+ P I  PP Y  +   PP Y    T
Sbjct: 318 YPTPYKQKPSYPPIYKSKSSYPTSYKSKKTYPPTYKPKITYPPTYKPKPSYPPSYKPKKT 377

Query: 165 KTDT 176
            + T
Sbjct: 378 YSPT 381



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>DGK3_CAEEL (Q03603) Probable diacylglycerol kinase 3 (EC 2.7.1.107)|
           (Diglyceride kinase 3) (DGK-3) (DAG kinase 3)
          Length = 812

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 235 GLLGFRFCRWCNKGPPKVPPACHVHHRPESCLRGRCDLG 351
           G+   + CRWC+          +VHHR  S L   CDLG
Sbjct: 349 GVFQGKGCRWCHN---------YVHHRCMSALAQECDLG 378



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>TRPB_PROMP (Q7TUH0) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 414

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 73  YVNNLAHLLQTYINPHVTTYNCRRITHKM*PKQIQCKSSPFW 198
           +VN L HLL+TY+      Y  +R+T      Q +  +S  W
Sbjct: 57  FVNELNHLLKTYVGRETPLYEAKRLTEHY---QTKTSTSRIW 95



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>5HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin|
           receptor 6) (ST-B17)
          Length = 436

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 33  SQGPTIYEYDTRFIRKQFGTFTPNIHQPPCYNLQLPP 143
           +  P IY    R  ++  G F P +H PP +   LPP
Sbjct: 314 TMNPIIYPLFMRDFKRALGRFLPCVHCPPEHRPALPP 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,243,104
Number of Sequences: 219361
Number of extensions: 1909529
Number of successful extensions: 4971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4967
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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