ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3l02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X14107.1|CHHVPSBD Hordeum vulgare chloroplast psbB, psbH, petB and petD Length = 5221 Score = 1090 bits (550), Expect = 0.0 Identities = 663/704 (94%), Gaps = 6/704 (0%) Strand = Plus / Minus Query: 1 cgtaatatagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagatt 58 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 3064 cgtaatatagaaattatcttgttgtgatcctatgaatcagttcaattaaaaccttagatt 3005 Query: 59 c-tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaata 116 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3004 catactagagccacgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaata 2945 Query: 117 agaaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgat 176 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2944 agaaccgcttgataatcatttattgaaattgaatcagtgtaatgactcgacaaaatcgat 2885 Query: 177 agnnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttcnnnnnnnnnn 236 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2884 agaaaaaaagttgtcttttgggcaaacaaaattgtaaggaagaaaatttcttttttattt 2825 Query: 237 nnatttaagaactacttgaatttttcagtctggttgcgaggtcttaatagtgagtatgaa 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2824 ttatttaagaactacttgaatttttcagtctggttgcgaggtcttaatagtgagtatgaa 2765 Query: 297 tcatagttccannnnnnnngatccactctatctatttcgtgttccagatactagaataaa 356 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2764 tcatagttccattttttttgatccactctatctatttcgtgttccagatactagaataaa 2705 Query: 357 taatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2704 taatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatc 2645 Query: 417 aataggatcaattctaacaagtcacacactcatattccagagataccgaaacnnnnnnnt 476 |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2644 aataggatcaattctaacaagtcacacactcatattccagagataccgaaacaaaaaaat 2585 Query: 477 tccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggctttttt 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2584 tccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggctttttt 2525 Query: 537 ggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaaattc 596 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2524 ggatggaaaaactctgacttcctagtttta-gttagtagaaacctaattggttaaaattc 2466 Query: 597 catccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaata 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2465 catccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaata 2406 Query: 657 aagccattgcgacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2405 aagccattgcgacccccataaaa-ggagtagtcccccaacccgg 2363
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 950 bits (479), Expect = 0.0 Identities = 648/704 (92%), Gaps = 15/704 (2%) Strand = Plus / Minus Query: 3 taatatagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc- 59 |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct: 71558 taatatagaaattatcttgttgagatcctatgaatcagttcaattaaaaccttagattca 71499 Query: 60 tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataa- 117 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71498 tactagagccacgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataaa 71439 Query: 118 gaaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgata 177 |||||||||||||||||||||||||| ||||||||||||||| |||||||||| | Sbjct: 71438 gaaccgcttgataatcatttattgaa------tcagtgtaatgactcgacaaaatcgaga 71385 Query: 178 gnnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttcnnnnnnnnnnn 237 | ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 71384 gaaaaaaagttgtcttttgggcaaacaaaattggaaggaaga-aatttcttttttatttt 71326 Query: 238 natttaagaactacttgaatttttcagtctggttgcgaggtcttaatagtgagtatgaat 297 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71325 tatttaagaactacttgaatttttcagtctggttgcgaggtcttaatagtgagtatgaat 71266 Query: 298 catagttccannnnnnnn-gatccactctatctatttcgtgttccagatactagaataaa 356 |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 71265 catagttccatttttttttgatccactctatctatttcgtgttccagatactagaataaa 71206 Query: 357 taatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71205 taatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatc 71146 Query: 417 aataggatcaattctaacaagtcacacactcatattccagagataccgaaacnnnnnnnt 476 |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 71145 aataggatcaattctaacaagtcacacactcatattccagagataccgaaacaaaaaaat 71086 Query: 477 tccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggctttttt 536 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 71085 tccgcggtcgaactaccataatatctagaaatgtagatcttaaactagaaaggctttttt 71026 Query: 537 ggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaaattc 596 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 71025 ggatggaaaaactctgacttcctagtttta-gttagtagaaacctaattggttaaaattc 70967 Query: 597 catccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaata 656 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70966 cgtccagtaaaacggaagaattataaatttctaaaatgatagataggaatatagcgaata 70907 Query: 657 aagccattgcgacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 70906 aagccattgcgacccccataaaa-ggagtagtcccccaacccgg 70864
>emb|X54751.1|CHTAPSGB Triticum aestivum chloroplast psbH, petB, petD, rpoA genes Length = 3240 Score = 844 bits (426), Expect = 0.0 Identities = 577/631 (91%), Gaps = 12/631 (1%) Strand = Plus / Minus Query: 3 taatatagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc- 59 |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct: 624 taatatagaaattatcttgttgagatcctatgaatcagttcaattaaaaccttagattca 565 Query: 60 tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataag 118 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 564 tactagagccacgatgatttagtctcaagctaaacaaaaggcaagggttcttcgcataag 505 Query: 119 aaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatag 178 ||||||||||||||||||||||||| ||||||||||||||| |||||||||| || Sbjct: 504 aaccgcttgataatcatttattgaa------tcagtgtaatgactcgacaaaatcgagag 451 Query: 179 nnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttcnnnnnnnnnnnn 238 ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 450 aaaaaaagttgtcttttgggcaaacaaaattggaaggaagaaaatttcttttttattttt 391 Query: 239 atttaagaactacttgaatttttcagtctggttgcgaggtcttaatagtgagtatgaatc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 atttaagaactacttgaatttttcagtctggttgcgaggtcttaatagtgagtatgaatc 331 Query: 299 atagttccannnnnnnn-gatccactctatctatttcgtgttccagatactagaataaat 357 ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 atagttccatttttttttgatccactctatctatttcgtgttccagatactagaataaat 271 Query: 358 aatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatca 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 aatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatca 211 Query: 418 ataggatcaattctaacaagtcacacactcatattccagagataccgaaacnnnnnnntt 477 ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 210 ataggatcaattctaacaagtcacacactcatattccagagataccgaaacaaaaaaatt 151 Query: 478 ccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggcttttttg 537 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 150 ccgcggtcgaactaccataatatctagaaatgtagatcttaaactagaaaggcttttttg 91 Query: 538 gatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaaattcc 597 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 90 gatggaaaaactctgacttcctagtttta-gttagtagaaacctaattggttaaaattcc 32 Query: 598 atccagtaaaatggaagaattataaatttct 628 |||||||||| ||||||||||||||||||| Sbjct: 31 gtccagtaaaacggaagaattataaatttct 1
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 563 bits (284), Expect = e-157 Identities = 405/445 (91%), Gaps = 4/445 (0%) Strand = Plus / Minus Query: 257 tttttcagtctggttgcgaggtcttaatagtgagtatgaatcatagttccannnnnnnng 316 ||||| |||||||||||||||||| ||||||||||||||||||||||||| | Sbjct: 73333 tttttaagtctggttgcgaggtctaaatagtgagtatgaatcatagttcctttttttttg 73274 Query: 317 atccactctatctatttcgtgttccagatactagaataaataatatctgacgaattagaa 376 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73273 atccactctatgtatttcgtgttccagatactagaataaataatatctgacgaattagaa 73214 Query: 377 tcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaacaa 436 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 73213 tcatcttgatagagataacaggccccttctatgtattatcaataggatcaattctaacaa 73154 Query: 437 gtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactaccata 496 ||||||||||||||||||||||||||| |||| ||| |||||||||||||| | Sbjct: 73153 gtcacacactcatattccagagataccaaaacaaaaaaa-tccacggtcgaactaccaga 73095 Query: 497 atatctagaaatgtagagcttaaactagaaaggc-ttttttggatggaaaaactctgact 555 || ||||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||| Sbjct: 73094 atgtctagaaatgtggagcttaaagtagaaaggctttttttggatggaaaaactatgaag 73035 Query: 556 tcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaaga 615 || |||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 73034 tcatagtttta-gttagtagaaacctaattcgttaaaattccgtccagtaaaacagaaga 72976 Query: 616 attataaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccat 675 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 72975 attataaatttctaaaattatagataggaatatcgcgaataaagccattgcgacccccat 72916 Query: 676 aaaagggagtagtcccccaacccgg 700 |||| |||||||||||||||||||| Sbjct: 72915 aaaa-ggagtagtcccccaacccgg 72892 Score = 186 bits (94), Expect = 7e-44 Identities = 134/142 (94%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 7 atagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tact 63 |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| Sbjct: 73552 atagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatact 73493 Query: 64 agagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaacc 122 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 73492 agagccacgatgattcagtctcaagataaacaaaaggcaagggttcttcgaataagaacc 73433 Query: 123 gcttgataatcatttattgaaa 144 ||||||| |||||||||||||| Sbjct: 73432 gcttgatgatcatttattgaaa 73411 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 190 tcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||||||||||||||||||| ||||||||||||||| Sbjct: 73397 tcttttgggcaaacaaaattggaaggaagaaaatttc 73361
>emb|X05422.1|CHZMPSB Maize chloroplast psbB-psbF-petB-petD gene cluster Length = 5329 Score = 563 bits (284), Expect = e-157 Identities = 405/445 (91%), Gaps = 4/445 (0%) Strand = Plus / Minus Query: 257 tttttcagtctggttgcgaggtcttaatagtgagtatgaatcatagttccannnnnnnng 316 ||||| |||||||||||||||||| ||||||||||||||||||||||||| | Sbjct: 2990 tttttaagtctggttgcgaggtctaaatagtgagtatgaatcatagttcctttttttttg 2931 Query: 317 atccactctatctatttcgtgttccagatactagaataaataatatctgacgaattagaa 376 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2930 atccactctatgtatttcgtgttccagatactagaataaataatatctgacgaattagaa 2871 Query: 377 tcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaacaa 436 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2870 tcatcttgatagagataacaggccccttctatgtattatcaataggatcaattctaacaa 2811 Query: 437 gtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactaccata 496 ||||||||||||||||||||||||||| |||| ||| |||||||||||||| | Sbjct: 2810 gtcacacactcatattccagagataccaaaacaaaaaaa-tccacggtcgaactaccaga 2752 Query: 497 atatctagaaatgtagagcttaaactagaaaggc-ttttttggatggaaaaactctgact 555 || ||||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||| Sbjct: 2751 atgtctagaaatgtggagcttaaagtagaaaggctttttttggatggaaaaactatgaag 2692 Query: 556 tcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaaga 615 || |||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 2691 tcatagtttta-gttagtagaaacctaattcgttaaaattccgtccagtaaaacagaaga 2633 Query: 616 attataaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccat 675 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 2632 attataaatttctaaaattatagataggaatatcgcgaataaagccattgcgacccccat 2573 Query: 676 aaaagggagtagtcccccaacccgg 700 |||| |||||||||||||||||||| Sbjct: 2572 aaaa-ggagtagtcccccaacccgg 2549 Score = 186 bits (94), Expect = 7e-44 Identities = 134/142 (94%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 7 atagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tact 63 |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| Sbjct: 3209 atagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatact 3150 Query: 64 agagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaacc 122 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 3149 agagccacgatgattcagtctcaagataaacaaaaggcaagggttcttcgaataagaacc 3090 Query: 123 gcttgataatcatttattgaaa 144 ||||||| |||||||||||||| Sbjct: 3089 gcttgatgatcatttattgaaa 3068 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 190 tcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||||||||||||||||||| ||||||||||||||| Sbjct: 3054 tcttttgggcaaacaaaattggaaggaagaaaatttc 3018
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 533 bits (269), Expect = e-148 Identities = 358/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 69574 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 69515 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 69514 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 69455 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 69454 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 69395 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 69394 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 69335 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 69334 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaatggaag 69276 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 69275 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 69216 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 69215 taaaa-ggagtagtcccccaacccgg 69191 Score = 210 bits (106), Expect = 5e-51 Identities = 197/223 (88%), Gaps = 11/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 69885 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 69826 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69825 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 69766 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 69765 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag-aaaa 69713 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 69712 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 69670 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 69655 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 69596 Query: 299 atagtt 304 |||||| Sbjct: 69595 atagtt 69590
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 533 bits (269), Expect = e-148 Identities = 358/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3638 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 3579 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 3578 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 3519 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 3518 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 3459 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 3458 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 3399 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 3398 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaatggaag 3340 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 3339 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 3280 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 3279 taaaa-ggagtagtcccccaacccgg 3255 Score = 210 bits (106), Expect = 5e-51 Identities = 197/223 (88%), Gaps = 11/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 3949 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 3890 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3889 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 3830 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 3829 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag-aaaa 3777 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 3776 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 3734 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 3719 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 3660 Query: 299 atagtt 304 |||||| Sbjct: 3659 atagtt 3654
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 533 bits (269), Expect = e-148 Identities = 358/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10363182 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 10363123 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 10363122 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 10363063 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 10363062 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 10363003 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 10363002 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 10362943 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 10362942 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaatggaag 10362884 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 10362883 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 10362824 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 10362823 taaaa-ggagtagtcccccaacccgg 10362799 Score = 210 bits (106), Expect = 5e-51 Identities = 197/223 (88%), Gaps = 11/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 10363493 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 10363434 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10363433 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 10363374 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 10363373 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag-aaaa 10363321 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 10363320 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 10363278 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 10363263 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 10363204 Query: 299 atagtt 304 |||||| Sbjct: 10363203 atagtt 10363198
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 533 bits (269), Expect = e-148 Identities = 358/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10369221 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 10369162 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 10369161 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 10369102 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 10369101 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 10369042 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 10369041 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 10368982 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 10368981 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaatggaag 10368923 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 10368922 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 10368863 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 10368862 taaaa-ggagtagtcccccaacccgg 10368838 Score = 210 bits (106), Expect = 5e-51 Identities = 197/223 (88%), Gaps = 11/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 10369532 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 10369473 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10369472 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 10369413 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 10369412 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag-aaaa 10369360 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 10369359 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 10369317 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 10369302 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 10369243 Query: 299 atagtt 304 |||||| Sbjct: 10369242 atagtt 10369237
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 71374 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 71315 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 71314 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 71255 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 71254 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 71195 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 71194 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 71135 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 71134 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 71076 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 71075 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 71016 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 71015 taaaa-ggagtagtcccccaacccgg 70991 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 71686 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 71627 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71626 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 71567 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 71566 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 71513 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 71512 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 71470 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 71455 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 71396 Query: 299 atagtt 304 |||||| Sbjct: 71395 atagtt 71390
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 71374 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 71315 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 71314 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 71255 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 71254 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 71195 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 71194 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 71135 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 71134 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 71076 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 71075 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 71016 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 71015 taaaa-ggagtagtcccccaacccgg 70991 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 71686 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 71627 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71626 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 71567 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 71566 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 71513 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 71512 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 71470 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 71455 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 71396 Query: 299 atagtt 304 |||||| Sbjct: 71395 atagtt 71390
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 71318 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 71259 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 71258 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 71199 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 71198 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 71139 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 71138 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 71079 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 71078 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 71020 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 71019 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 70960 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 70959 taaaa-ggagtagtcccccaacccgg 70935 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 71630 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 71571 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71570 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 71511 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 71510 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 71457 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 71456 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 71414 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 71399 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 71340 Query: 299 atagtt 304 |||||| Sbjct: 71339 atagtt 71334
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 71366 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 71307 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 71306 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 71247 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 71246 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 71187 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 71186 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 71127 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 71126 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 71068 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 71067 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 71008 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 71007 taaaa-ggagtagtcccccaacccgg 70983 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 71678 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 71619 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71618 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 71559 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 71558 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 71505 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 71504 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 71462 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 71447 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 71388 Query: 299 atagtt 304 |||||| Sbjct: 71387 atagtt 71382
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 79408 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 79467 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 79468 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 79527 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 79528 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 79587 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 79588 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 79647 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 79648 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 79706 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 79707 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 79766 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 79767 taaaa-ggagtagtcccccaacccgg 79791 Score = 212 bits (107), Expect = 1e-51 Identities = 196/223 (87%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||| Sbjct: 79097 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagatttatacta 79156 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79157 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 79216 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 79217 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 79270 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 79271 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 79313 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 79328 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 79387 Query: 299 atagtt 304 |||||| Sbjct: 79388 atagtt 79393
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9198335 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 9198394 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 9198395 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 9198454 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 9198455 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 9198514 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 9198515 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 9198574 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 9198575 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 9198633 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 9198634 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 9198693 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 9198694 taaaa-ggagtagtcccccaacccgg 9198718 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9121382 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 9121441 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 9121442 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 9121501 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 9121502 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 9121561 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 9121562 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 9121621 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 9121622 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 9121680 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 9121681 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 9121740 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 9121741 taaaa-ggagtagtcccccaacccgg 9121765 Score = 212 bits (107), Expect = 1e-51 Identities = 196/223 (87%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||| Sbjct: 9198024 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagatttatacta 9198083 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9198084 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 9198143 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 9198144 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 9198197 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 9198198 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 9198240 Score = 212 bits (107), Expect = 1e-51 Identities = 196/223 (87%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||| Sbjct: 9121071 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagatttatacta 9121130 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9121131 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 9121190 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 9121191 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 9121244 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 9121245 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 9121287 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 9198255 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 9198314 Query: 299 atagtt 304 |||||| Sbjct: 9198315 atagtt 9198320 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 9121302 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 9121361 Query: 299 atagtt 304 |||||| Sbjct: 9121362 atagtt 9121367
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 525 bits (265), Expect = e-146 Identities = 357/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 71297 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 71238 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 71237 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 71178 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 71177 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 71118 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 71117 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 71058 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 71057 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 70999 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 70998 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 70939 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 70938 taaaa-ggagtagtcccccaacccgg 70914 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 71609 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 71550 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71549 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 71490 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 71489 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 71436 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 71435 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 71393 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 71378 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 71319 Query: 299 atagtt 304 |||||| Sbjct: 71318 atagtt 71313
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 517 bits (261), Expect = e-143 Identities = 356/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 9265682 gatccactctatctatttcgtgttacagatactagaataaataatatccgacgaattaga 9265741 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 9265742 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 9265801 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 9265802 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 9265861 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 9265862 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 9265921 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 9265922 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 9265980 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 9265981 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 9266040 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 9266041 taaaa-ggagtagtcccccaacccgg 9266065 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 9265370 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 9265429 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9265430 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 9265489 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 9265490 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 9265543 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 9265544 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 9265586 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 9265601 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 9265660 Query: 299 atagtt 304 |||||| Sbjct: 9265661 atagtt 9265666
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 517 bits (261), Expect = e-143 Identities = 356/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 23187742 gatccactctatctatttcgtgttccagatactagaacaaataatatccgacgaattaga 23187801 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 23187802 atcatcttgatagagataacaggtgctttctatgtattatcaataggaacaaattctaac 23187861 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 23187862 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 23187921 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 23187922 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 23187981 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 23187982 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 23188040 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 23188041 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 23188100 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 23188101 taaaa-ggagtagtcccccaacccgg 23188125 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 23187430 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 23187489 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23187490 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 23187549 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 23187550 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 23187603 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 23187604 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 23187646 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 23187661 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 23187720 Query: 299 atagtt 304 |||||| Sbjct: 23187721 atagtt 23187726 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tttgggcaaacaaaattgta 212 |||||||||||||||||||| Sbjct: 21326193 tttgggcaaacaaaattgta 21326212
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 517 bits (261), Expect = e-143 Identities = 357/386 (92%), Gaps = 4/386 (1%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73287 gatccactctatgtatttcgtgttccagatactagaataaataatatctgacgaattaga 73228 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaaca 435 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 73227 atcatcttgatagagataacaggccccttctatgtattatcaataggatcaattctaaca 73168 Query: 436 agtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactaccat 495 |||||||||||||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 73167 agtcacacactcatattccagagataccaaaacaaaaaaa-tccacggtcgaactaccag 73109 Query: 496 aatatctagaaatgtagagcttaaactagaaaggc-ttttttggatggaaaaactctgac 554 ||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||| Sbjct: 73108 aatgtctagaaatgtggagcttaaagtagaaaggctttttttggatggaaaaactatgaa 73049 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 || |||||||| |||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 73048 gtcatagtttta-gttagtagaaacctaattcgttaaaattccgtccagtaaaacagaag 72990 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 72989 aattataaatttctaaaattatagataggaatatcgcgaataaagccattgcgaccccca 72930 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 72929 taaaa-ggagtagtcccccaacccgg 72905 Score = 186 bits (94), Expect = 7e-44 Identities = 134/142 (94%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 7 atagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tact 63 |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| Sbjct: 73567 atagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatact 73508 Query: 64 agagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaacc 122 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 73507 agagccacgatgattcagtctcaagataaacaaaaggcaagggttcttcgaataagaacc 73448 Query: 123 gcttgataatcatttattgaaa 144 ||||||| |||||||||||||| Sbjct: 73447 gcttgatgatcatttattgaaa 73426 Score = 83.8 bits (42), Expect = 7e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 257 tttttcagtctggttgcgaggtcttaatagtgagtatgaatcatagttcc 306 ||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 73347 tttttaagtctggttgcgaggtctaaatagtgagtatgaatcatagttcc 73298 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 190 tcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||||||||||||||||||| ||||||||||||||| Sbjct: 73412 tcttttgggcaaacaaaattggaaggaagaaaatttc 73376
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 517 bits (261), Expect = e-143 Identities = 356/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 76895 gatccactctatctatttcgtgttacagatactagaataaataatatccgacgaattaga 76954 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 76955 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 77014 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 77015 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 77074 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 77075 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 77134 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 77135 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 77193 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 77194 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 77253 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 77254 taaaa-ggagtagtcccccaacccgg 77278 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 76583 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 76642 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76643 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 76702 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 76703 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 76756 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 76757 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 76799 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 76814 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 76873 Query: 299 atagtt 304 |||||| Sbjct: 76874 atagtt 76879
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 517 bits (261), Expect = e-143 Identities = 356/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 138390 gatccactctatctatttcgtgttccagatactagaacaaataatatccgacgaattaga 138449 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 138450 atcatcttgatagagataacaggtgctttctatgtattatcaataggaacaaattctaac 138509 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 138510 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 138569 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 138570 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 138629 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 138630 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 138688 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 138689 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 138748 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 138749 taaaa-ggagtagtcccccaacccgg 138773 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 138078 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 138137 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138138 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 138197 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 138198 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 138251 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 138252 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 138294 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 138309 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 138368 Query: 299 atagtt 304 |||||| Sbjct: 138369 atagtt 138374
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 517 bits (261), Expect = e-143 Identities = 356/386 (92%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 22504 gatccactctatctatttcgtgttccagatactagaacaaataatatccgacgaattaga 22563 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 22564 atcatcttgatagagataacaggtgctttctatgtattatcaataggaacaaattctaac 22623 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 22624 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 22683 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 22684 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 22743 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct: 22744 ttcgtagtttt-cgttagtagaaacctaattcattaaaattccgtccagtaaaacggaag 22802 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 22803 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 22862 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 22863 taaaa-ggagtagtcccccaacccgg 22887 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 22192 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 22251 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22252 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 22311 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 22312 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 22365 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 22366 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 22408 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 22423 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 22482 Query: 299 atagtt 304 |||||| Sbjct: 22483 atagtt 22488
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 509 bits (257), Expect = e-141 Identities = 355/386 (91%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5647631 gatccactctatctattttgtgttccagatactagaataaataatatccgacgaattaga 5647572 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 5647571 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 5647512 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 5647511 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 5647452 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 5647451 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 5647392 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||| ||||| |||||||||| |||||||||| ||||| Sbjct: 5647391 ttcgtagtttt-cgttagtagaaacgtaattcattaaaattccgtccagtaaaacggaag 5647333 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 5647332 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 5647273 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 5647272 taaaa-ggagtagtcccccaacccgg 5647248 Score = 206 bits (104), Expect = 7e-50 Identities = 154/168 (91%), Gaps = 2/168 (1%) Strand = Plus / Plus Query: 533 ttttggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaa 592 ||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||| Sbjct: 13436159 ttttggaatgaaaaactatgacttcgtagttttcg-ttagtagaaacctaattcattaaa 13436217 Query: 593 attccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcg 652 ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 13436218 attccgtccagtaaaacggaagaattataaatttctaaaataatagataggaataccgcg 13436277 Query: 653 aataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 13436278 aataaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 13436324 Score = 167 bits (84), Expect = 6e-38 Identities = 146/168 (86%), Gaps = 7/168 (4%) Strand = Plus / Minus Query: 60 tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataag 118 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 5647887 tactagagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataag 5647828 Query: 119 aaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatag 178 ||||||||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 5647827 aaccgcttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag 5647774 Query: 179 nnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 5647773 aaaaaaagttgttttttgggcaaacaaaattggaaggaagaaattttc 5647726 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 606 aaatggaagaattataaatttctaaaatgatagataggaatatagcgaataaagccattg 665 ||||||||||| |||||||||| ||||| ||||||||||||| || |||||||||||| Sbjct: 9252642 aaatggaagaactataaatttcaaaaataatagataggaataccacgtataaagccattg 9252583 Query: 666 cgaccccc 673 |||||||| Sbjct: 9252582 cgaccccc 9252575 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/66 (90%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||| ||||||| |||||| | |||||||| Sbjct: 5647711 ttaagaactacttgaatttttttcagtctggttgtgaggtctgaatagttaatatgaatc 5647652 Query: 299 atagtt 304 |||||| Sbjct: 5647651 atagtt 5647646 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/54 (94%), Gaps = 2/54 (3%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttc-attaaaaccttagattc 59 ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 5651077 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattc 5651024
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 509 bits (257), Expect = e-141 Identities = 355/386 (91%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5647620 gatccactctatctattttgtgttccagatactagaataaataatatccgacgaattaga 5647561 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 5647560 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 5647501 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 5647500 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 5647441 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 5647440 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 5647381 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||| ||||| |||||||||| |||||||||| ||||| Sbjct: 5647380 ttcgtagtttt-cgttagtagaaacgtaattcattaaaattccgtccagtaaaacggaag 5647322 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 5647321 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 5647262 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 5647261 taaaa-ggagtagtcccccaacccgg 5647237 Score = 206 bits (104), Expect = 7e-50 Identities = 154/168 (91%), Gaps = 2/168 (1%) Strand = Plus / Plus Query: 533 ttttggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaa 592 ||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||| Sbjct: 13390433 ttttggaatgaaaaactatgacttcgtagttttcg-ttagtagaaacctaattcattaaa 13390491 Query: 593 attccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcg 652 ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 13390492 attccgtccagtaaaacggaagaattataaatttctaaaataatagataggaataccgcg 13390551 Query: 653 aataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 13390552 aataaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 13390598 Score = 167 bits (84), Expect = 6e-38 Identities = 146/168 (86%), Gaps = 7/168 (4%) Strand = Plus / Minus Query: 60 tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataag 118 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 5647876 tactagagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataag 5647817 Query: 119 aaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatag 178 ||||||||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 5647816 aaccgcttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag 5647763 Query: 179 nnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 5647762 aaaaaaagttgttttttgggcaaacaaaattggaaggaagaaattttc 5647715 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 606 aaatggaagaattataaatttctaaaatgatagataggaatatagcgaataaagccattg 665 ||||||||||| |||||||||| ||||| ||||||||||||| || |||||||||||| Sbjct: 9252527 aaatggaagaactataaatttcaaaaataatagataggaataccacgtataaagccattg 9252468 Query: 666 cgaccccc 673 |||||||| Sbjct: 9252467 cgaccccc 9252460 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/66 (90%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||| ||||||| |||||| | |||||||| Sbjct: 5647700 ttaagaactacttgaatttttttcagtctggttgtgaggtctgaatagttaatatgaatc 5647641 Query: 299 atagtt 304 |||||| Sbjct: 5647640 atagtt 5647635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/54 (94%), Gaps = 2/54 (3%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttc-attaaaaccttagattc 59 ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 5651070 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattc 5651017
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 509 bits (257), Expect = e-141 Identities = 355/386 (91%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2150 gatccactctatctattttgtgttccagatactagaataaataatatccgacgaattaga 2091 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 2090 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 2031 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 2030 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 1971 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 1970 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 1911 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||| ||||| |||||||||| |||||||||| ||||| Sbjct: 1910 ttcgtagtttt-cgttagtagaaacgtaattcattaaaattccgtccagtaaaacggaag 1852 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 1851 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 1792 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 1791 taaaa-ggagtagtcccccaacccgg 1767 Score = 167 bits (84), Expect = 6e-38 Identities = 146/168 (86%), Gaps = 7/168 (4%) Strand = Plus / Minus Query: 60 tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataag 118 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2406 tactagagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataag 2347 Query: 119 aaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatag 178 ||||||||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 2346 aaccgcttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag 2293 Query: 179 nnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 2292 aaaaaaagttgttttttgggcaaacaaaattggaaggaagaaattttc 2245 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/66 (90%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||| ||||||| |||||| | |||||||| Sbjct: 2230 ttaagaactacttgaatttttttcagtctggttgtgaggtctgaatagttaatatgaatc 2171 Query: 299 atagtt 304 |||||| Sbjct: 2170 atagtt 2165 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/54 (94%), Gaps = 2/54 (3%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttc-attaaaaccttagattc 59 ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 5600 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattc 5547
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 509 bits (257), Expect = e-141 Identities = 355/386 (91%), Gaps = 3/386 (0%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5254 gatccactctatctattttgtgttccagatactagaataaataatatccgacgaattaga 5313 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 5314 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 5373 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 5374 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 5433 Query: 495 taatatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgac 554 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct: 5434 gaatgtctagaaatgtagagcttaaagtagaaaggctcttttggatggaaaaactatgac 5493 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 ||| ||||||| |||||||||||| ||||| |||||||||| |||||||||| ||||| Sbjct: 5494 ttcgtagtttt-cgttagtagaaacgtaattcattaaaattccgtccagtaaaacggaag 5552 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct: 5553 aattataaatttctaaaataatagataggaataccgcgaataaagccattgcgaccccca 5612 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 5613 taaaa-ggagtagtcccccaacccgg 5637 Score = 167 bits (84), Expect = 6e-38 Identities = 146/168 (86%), Gaps = 7/168 (4%) Strand = Plus / Plus Query: 60 tactagagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataag 118 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 4998 tactagagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataag 5057 Query: 119 aaccgcttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatag 178 ||||||||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 5058 aaccgcttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagag 5111 Query: 179 nnnnnnngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 5112 aaaaaaagttgttttttgggcaaacaaaattggaaggaagaaattttc 5159 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/66 (90%), Gaps = 2/66 (3%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||| ||||||| |||||| | |||||||| Sbjct: 5174 ttaagaactacttgaatttttttcagtctggttgtgaggtctgaatagttaatatgaatc 5233 Query: 299 atagtt 304 |||||| Sbjct: 5234 atagtt 5239 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/54 (94%), Gaps = 2/54 (3%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttc-attaaaaccttagattc 59 ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| Sbjct: 1808 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattc 1861
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 502 bits (253), Expect = e-139 Identities = 355/386 (91%), Gaps = 4/386 (1%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 135555 gatccactctatgtatttcgtgttccagatactagaataaataatatccgacgaattaga 135496 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaaca 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135495 atcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaaca 135436 Query: 436 agtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactaccat 495 |||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 135435 agtcacacactcatattccagaaataccaaaacaaaaaaa-tccacggtcgaactaccag 135377 Query: 496 aatatctagaaatgtagagcttaaactagaaaggc-ttttttggatggaaaaactctgac 554 ||| ||||||||||| ||||||||| ||||||||| |||||||||||| |||||| ||| Sbjct: 135376 aatgtctagaaatgtggagcttaaagtagaaaggctttttttggatgggaaaactatgaa 135317 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 || |||||||| |||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 135316 gtcatagtttta-gttagtagaaacctaattcgttaaaattccgtccagtaaaacagaag 135258 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 135257 aattataaatttctaaaattatagataggaatatcgcgaataaagccattgcgaccccca 135198 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 135197 taaaa-ggagtagtcccccaacccgg 135173 Score = 186 bits (94), Expect = 7e-44 Identities = 134/142 (94%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 7 atagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tact 63 |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| Sbjct: 135836 atagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatact 135777 Query: 64 agagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaacc 122 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 135776 agagccacgatgattgagtctcaagataaacaaaaggcaagggttcttcgaataagaacc 135717 Query: 123 gcttgataatcatttattgaaa 144 ||||||| |||||||||||||| Sbjct: 135716 gcttgatgatcatttattgaaa 135695 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%), Gaps = 5/71 (7%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt-----cagtctggttgcgaggtcttaatagtgagtatga 295 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 135636 ttaagaactacttgaattttttttttcagtctggttgcgaggtctaaatagtgagtatga 135577 Query: 296 atcatagttcc 306 ||||||||||| Sbjct: 135576 atcatagttcc 135566 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 190 tcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||||||||||||||||||| ||||||||||||||| Sbjct: 135681 tcttttgggcaaacaaaattggaaggaagaaaatttc 135645
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 502 bits (253), Expect = e-139 Identities = 355/386 (91%), Gaps = 4/386 (1%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 73929 gatccactctatgtatttcgtgttccagatactagaataaataatatccgacgaattaga 73870 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaaca 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73869 atcatcttgatagagataacaggccctttctatgtattatcaataggatcaattctaaca 73810 Query: 436 agtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactaccat 495 |||||||||||||||||||||| ||||| |||| ||| |||||||||||||| Sbjct: 73809 agtcacacactcatattccagaaataccaaaacaaaaaaa-tccacggtcgaactaccag 73751 Query: 496 aatatctagaaatgtagagcttaaactagaaaggc-ttttttggatggaaaaactctgac 554 ||| ||||||||||| ||||||||| ||||||||| |||||||||||| |||||| ||| Sbjct: 73750 aatgtctagaaatgtggagcttaaagtagaaaggctttttttggatgggaaaactatgaa 73691 Query: 555 ttcctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaag 614 || |||||||| |||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 73690 gtcatagtttta-gttagtagaaacctaattcgttaaaattccgtccagtaaaacagaag 73632 Query: 615 aattataaatttctaaaatgatagataggaatatagcgaataaagccattgcgaccccca 674 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 73631 aattataaatttctaaaattatagataggaatatcgcgaataaagccattgcgaccccca 73572 Query: 675 taaaagggagtagtcccccaacccgg 700 ||||| |||||||||||||||||||| Sbjct: 73571 taaaa-ggagtagtcccccaacccgg 73547 Score = 186 bits (94), Expect = 7e-44 Identities = 134/142 (94%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 7 atagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tact 63 |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||| Sbjct: 74210 atagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatact 74151 Query: 64 agagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaacc 122 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 74150 agagccacgatgattgagtctcaagataaacaaaaggcaagggttcttcgaataagaacc 74091 Query: 123 gcttgataatcatttattgaaa 144 ||||||| |||||||||||||| Sbjct: 74090 gcttgatgatcatttattgaaa 74069 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%), Gaps = 5/71 (7%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt-----cagtctggttgcgaggtcttaatagtgagtatga 295 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 74010 ttaagaactacttgaattttttttttcagtctggttgcgaggtctaaatagtgagtatga 73951 Query: 296 atcatagttcc 306 ||||||||||| Sbjct: 73950 atcatagttcc 73940 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 190 tcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||||||||||||||||||| ||||||||||||||| Sbjct: 74055 tcttttgggcaaacaaaattggaaggaagaaaatttc 74019
>emb|X54749.1|CHTAPSG Triticum aestivum chloroplast psbB, orf38, psbN, psbH, petB genes Length = 2880 Score = 426 bits (215), Expect = e-116 Identities = 252/264 (95%), Gaps = 2/264 (0%) Strand = Plus / Minus Query: 437 gtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactaccata 496 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2880 gtcacacactcatattccagagataccgaaacaaaaaaattccgcggtcgaactaccata 2821 Query: 497 atatctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgactt 556 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2820 atatctagaaatgtagatcttaaactagaaaggcttttttggatggaaaaactctgactt 2761 Query: 557 cctagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaagaa 616 ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 2760 cctagttttag-ttagtagaaacctaattggttaaaattccgtccagtaaaacggaagaa 2702 Query: 617 ttataaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccata 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2701 ttataaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccata 2642 Query: 677 aaagggagtagtcccccaacccgg 700 ||| |||||||||||||||||||| Sbjct: 2641 aaa-ggagtagtcccccaacccgg 2619
>emb|X07672.1|CHSCPBH Secale cereale chloroplast psbB and psbH genes Length = 2579 Score = 335 bits (169), Expect = 1e-88 Identities = 195/201 (97%), Gaps = 2/201 (0%) Strand = Plus / Minus Query: 500 tctagaaatgtagagcttaaactagaaaggcttttttggatggaaaaactctgacttcct 559 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2579 tctagaaatgtagatcttaaactagaaaggcttttttggatggaaaaactctgacttcct 2520 Query: 560 agttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaagaatta 619 |||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||| Sbjct: 2519 agttttag-ttagtagaaacttaattggttaaaattccgtccagtaaaacggaagaatta 2461 Query: 620 taaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccataaaa 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2460 taaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccataaaa 2401 Query: 680 gggagtagtcccccaacccgg 700 |||||||||||||||||||| Sbjct: 2400 -ggagtagtcccccaacccgg 2381
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 295 bits (149), Expect = 1e-76 Identities = 208/225 (92%), Gaps = 2/225 (0%) Strand = Plus / Minus Query: 476 ttccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggcttttt 535 |||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| Sbjct: 2443956 ttccacggtcgaactaccagaatgtctagaaatgtagagcttaaagtagaaaggctcttt 2443897 Query: 536 tggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaaatt 595 |||||||||||||| ||||||| ||||||| | ||||||||||||||||| |||||||| Sbjct: 2443896 tggatggaaaaactatgacttcgtagttttcg-ttagtagaaacctaattcattaaaatt 2443838 Query: 596 ccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaat 655 || |||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 2443837 ccgtccagtaaaacggaagaattataaatttctaaaataatagataggaataccgcgaat 2443778 Query: 656 aaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2443777 aaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 2443734
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 295 bits (149), Expect = 1e-76 Identities = 208/225 (92%), Gaps = 2/225 (0%) Strand = Plus / Minus Query: 476 ttccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggcttttt 535 |||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| Sbjct: 122366 ttccacggtcgaactaccagaatgtctagaaatgtagagcttaaagtagaaaggctcttt 122307 Query: 536 tggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaaatt 595 |||||||||||||| ||||||| ||||||| | ||||||||||||||||| |||||||| Sbjct: 122306 tggatggaaaaactatgacttcgtagttttcg-ttagtagaaacctaattcattaaaatt 122248 Query: 596 ccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaat 655 || |||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 122247 ccgtccagtaaaacggaagaattataaatttctaaaataatagataggaataccgcgaat 122188 Query: 656 aaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 122187 aaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 122144
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 295 bits (149), Expect = 1e-76 Identities = 208/225 (92%), Gaps = 2/225 (0%) Strand = Plus / Minus Query: 476 ttccgcggtcgaactaccataatatctagaaatgtagagcttaaactagaaaggcttttt 535 |||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| Sbjct: 30546 ttccacggtcgaactaccagaatgtctagaaatgtagagcttaaagtagaaaggctcttt 30487 Query: 536 tggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaaatt 595 |||||||||||||| ||||||| ||||||| | ||||||||||||||||| |||||||| Sbjct: 30486 tggatggaaaaactatgacttcgtagttttcg-ttagtagaaacctaattcattaaaatt 30428 Query: 596 ccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaat 655 || |||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 30427 ccgtccagtaaaacggaagaattataaatttctaaaataatagataggaataccgcgaat 30368 Query: 656 aaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 30367 aaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 30324
>gb|M35995.1|RICCPETB Rice chloroplast apocytochrome b6 (petB) gene, complete cds Length = 1682 Score = 285 bits (144), Expect = 1e-73 Identities = 186/201 (92%), Gaps = 1/201 (0%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 201 gatccactctatctatttcgtgttccagatactagaataaataatatccgacgaattaga 142 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| Sbjct: 141 atcatcttgatagagataacaggtgctttctatgtattatcaataggagcaaattctaac 82 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 81 aagtcacacactcatattccagagataccgaaaccaaaaaattccacggtcgaactacca 22 Query: 495 taatatctagaaatgtagagc 515 ||| |||||||||||||||| Sbjct: 21 gaatgtctagaaatgtagagc 1 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 513 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 454 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 394 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 393 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 340 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 339 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 297 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt--cagtctggttgcgaggtcttaatagtgagtatgaatc 298 ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| Sbjct: 282 ttaagaactacttgaatttttttcagtctggttgcgaggtctgaatagttaatatgaatc 223 Query: 299 atagtt 304 |||||| Sbjct: 222 atagtt 217
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 272 bits (137), Expect = 1e-69 Identities = 212/237 (89%), Gaps = 3/237 (1%) Strand = Plus / Plus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 28903 gatccattctatctatttcgtgttccaaatactagaataaataatatccgacgaattaga 28962 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 28963 atcatcttgatagagataacaggccctttctatgtattatcaataggagcaaattctaac 29022 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 ||||||| |||||||||||||||||||||||||| | |||||||||||||| Sbjct: 29023 aagtcacccactcatattccagagataccgaaaccaaaaaaaatcacggtcgaactacca 29082 Query: 495 taatatctagaaatgtagagcttaaactagaa--aggcttttttggatggaaaaact 549 ||| ||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 29083 gaatgtctagaaatatagagcttaaagtagaaagaggctcttttggatggagaaact 29139 Score = 73.8 bits (37), Expect = 7e-10 Identities = 59/65 (90%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 241 ttaagaactacttgaattttt-cagtctggttgcgaggtcttaatagtgagtatgaatca 299 ||||||||||||||| ||||| ||||||||||| ||||||| |||||| | ||||||||| Sbjct: 28824 ttaagaactacttgatttttttcagtctggttgtgaggtctgaatagttaatatgaatca 28883 Query: 300 tagtt 304 ||||| Sbjct: 28884 tagtt 28888 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Plus Query: 192 ttttgggcaaacaaaattgtaaggaagaa 220 ||||||||||||||||||| ||||||||| Sbjct: 28775 ttttgggcaaacaaaattggaaggaagaa 28803
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 272 bits (137), Expect = 1e-69 Identities = 212/237 (89%), Gaps = 3/237 (1%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 15732 gatccattctatctatttcgtgttccaaatactagaataaataatatccgacgaattaga 15673 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 15672 atcatcttgatagagataacaggccctttctatgtattatcaataggagcaaattctaac 15613 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 ||||||| |||||||||||||||||||||||||| | |||||||||||||| Sbjct: 15612 aagtcacccactcatattccagagataccgaaaccaaaaaaaatcacggtcgaactacca 15553 Query: 495 taatatctagaaatgtagagcttaaactagaa--aggcttttttggatggaaaaact 549 ||| ||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 15552 gaatgtctagaaatatagagcttaaagtagaaagaggctcttttggatggagaaact 15496 Score = 73.8 bits (37), Expect = 7e-10 Identities = 59/65 (90%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt-cagtctggttgcgaggtcttaatagtgagtatgaatca 299 ||||||||||||||| ||||| ||||||||||| ||||||| |||||| | ||||||||| Sbjct: 15811 ttaagaactacttgatttttttcagtctggttgtgaggtctgaatagttaatatgaatca 15752 Query: 300 tagtt 304 ||||| Sbjct: 15751 tagtt 15747 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 192 ttttgggcaaacaaaattgtaaggaagaa 220 ||||||||||||||||||| ||||||||| Sbjct: 15860 ttttgggcaaacaaaattggaaggaagaa 15832
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 272 bits (137), Expect = 1e-69 Identities = 212/237 (89%), Gaps = 3/237 (1%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 16021514 gatccattctatctatttcgtgttccaaatactagaataaataatatccgacgaattaga 16021455 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 16021454 atcatcttgatagagataacaggccctttctatgtattatcaataggagcaaattctaac 16021395 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 ||||||| |||||||||||||||||||||||||| | |||||||||||||| Sbjct: 16021394 aagtcacccactcatattccagagataccgaaaccaaaaaaaatcacggtcgaactacca 16021335 Query: 495 taatatctagaaatgtagagcttaaactagaa--aggcttttttggatggaaaaact 549 ||| ||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 16021334 gaatgtctagaaatatagagcttaaagtagaaagaggctcttttggatggagaaact 16021278 Score = 127 bits (64), Expect = 5e-26 Identities = 111/120 (92%), Gaps = 5/120 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatcg-ttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||| Sbjct: 36034207 tagaaattatcttgttgcgatcctatgaatcaattcaattaaaaccttagattcatacta 36034266 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 36034267 gagccacaatgattgagtctcaagctaaacaaaaggcaa-ggttcttcgaataagaaccg 36034325 Score = 73.8 bits (37), Expect = 7e-10 Identities = 59/65 (90%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt-cagtctggttgcgaggtcttaatagtgagtatgaatca 299 ||||||||||||||| ||||| ||||||||||| ||||||| |||||| | ||||||||| Sbjct: 16021593 ttaagaactacttgatttttttcagtctggttgtgaggtctgaatagttaatatgaatca 16021534 Query: 300 tagtt 304 ||||| Sbjct: 16021533 tagtt 16021529 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 192 ttttgggcaaacaaaattgtaaggaagaa 220 ||||||||||||||||||| ||||||||| Sbjct: 16021642 ttttgggcaaacaaaattggaaggaagaa 16021614
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 272 bits (137), Expect = 1e-69 Identities = 212/237 (89%), Gaps = 3/237 (1%) Strand = Plus / Minus Query: 316 gatccactctatctatttcgtgttccagatactagaataaataatatctgacgaattaga 375 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 16016048 gatccattctatctatttcgtgttccaaatactagaataaataatatccgacgaattaga 16015989 Query: 376 atcatcttgatagagataacaggccctttctatgtattatcaataggatc-aattctaac 434 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 16015988 atcatcttgatagagataacaggccctttctatgtattatcaataggagcaaattctaac 16015929 Query: 435 aagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacca 494 ||||||| |||||||||||||||||||||||||| | |||||||||||||| Sbjct: 16015928 aagtcacccactcatattccagagataccgaaaccaaaaaaaatcacggtcgaactacca 16015869 Query: 495 taatatctagaaatgtagagcttaaactagaa--aggcttttttggatggaaaaact 549 ||| ||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 16015868 gaatgtctagaaatatagagcttaaagtagaaagaggctcttttggatggagaaact 16015812 Score = 127 bits (64), Expect = 5e-26 Identities = 111/120 (92%), Gaps = 5/120 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatcg-ttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||| Sbjct: 36124281 tagaaattatcttgttgcgatcctatgaatcaattcaattaaaaccttagattcatacta 36124340 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 36124341 gagccacaatgattgagtctcaagctaaacaaaaggcaa-ggttcttcgaataagaaccg 36124399 Score = 73.8 bits (37), Expect = 7e-10 Identities = 59/65 (90%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 241 ttaagaactacttgaattttt-cagtctggttgcgaggtcttaatagtgagtatgaatca 299 ||||||||||||||| ||||| ||||||||||| ||||||| |||||| | ||||||||| Sbjct: 16016127 ttaagaactacttgatttttttcagtctggttgtgaggtctgaatagttaatatgaatca 16016068 Query: 300 tagtt 304 ||||| Sbjct: 16016067 tagtt 16016063 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 192 ttttgggcaaacaaaattgtaaggaagaa 220 ||||||||||||||||||| ||||||||| Sbjct: 16016176 ttttgggcaaacaaaattggaaggaagaa 16016148
>emb|X12695.1|CHOSPSBF Rice chloroplast psbH gene for 10 kD phosphoprotein potential component of photosystem II Length = 340 Score = 236 bits (119), Expect = 8e-59 Identities = 166/179 (92%), Gaps = 2/179 (1%) Strand = Plus / Minus Query: 522 tagaaaggcttttttggatggaaaaactctgacttcctagttttaggttagtagaaacct 581 |||||||||| ||||||||||||||||| ||||||| ||||||| | ||||||||||||| Sbjct: 338 tagaaaggctcttttggatggaaaaactatgacttcgtagttttcg-ttagtagaaacct 280 Query: 582 aattggttaaaattccatccagtaaaatggaagaattataaatttctaaaatgatagata 641 |||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 279 aattcattaaaattccgtccagtaaaacggaagaattataaatttctaaaataatagata 220 Query: 642 ggaatatagcgaataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 219 ggaataccgcgaataaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 162
>emb|X04710.1|CHTAPSBH Wheat chloroplast psbH gene for 10kDa phosphoprotein Length = 322 Score = 234 bits (118), Expect = 3e-58 Identities = 138/142 (97%), Gaps = 2/142 (1%) Strand = Plus / Minus Query: 559 tagttttaggttagtagaaacctaattggttaaaattccatccagtaaaatggaagaatt 618 ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 322 tagttttag-ttagtagaaacctaattggttaaaattccgtccagtaaaacggaagaatt 264 Query: 619 ataaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccataaa 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 ataaatttctaaaatgatagataggaatatagcgaataaagccattgcgacccccataaa 204 Query: 679 agggagtagtcccccaacccgg 700 | |||||||||||||||||||| Sbjct: 203 a-ggagtagtcccccaacccgg 183
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 33491455 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 33491396 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33491395 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 33491336 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 33491335 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 33491282 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 33491281 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 33491239
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 220 bits (111), Expect = 5e-54 Identities = 197/223 (88%), Gaps = 10/223 (4%) Strand = Plus / Minus Query: 8 tagaaattatcttgttgtgatcctatgaatc-gttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct: 36652 tagaaattatcttgttgcgatcctatgaatcagttcaattaaaaccttagattcatacta 36593 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36592 gagccacgatgattgagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 36533 Query: 124 cttgataatcatttattgaaattgaatcagtgtaatgactcaacaaaatcgatagnnnnn 183 |||||| ||||||| |||||||| |||||||||||| |||||||||| || Sbjct: 36532 cttgatgatcattt------attgaatcggtgtaatgactcgacaaaatcgagagaaaaa 36479 Query: 184 nngttgtcttttgggcaaacaaaattgtaaggaagaaaatttc 226 ||||| ||||||||||||||||||| |||||||||| |||| Sbjct: 36478 aagttgttttttgggcaaacaaaattggaaggaagaaattttc 36436
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154442 Score = 206 bits (104), Expect = 7e-50 Identities = 154/168 (91%), Gaps = 2/168 (1%) Strand = Plus / Minus Query: 533 ttttggatggaaaaactctgacttcctagttttaggttagtagaaacctaattggttaaa 592 ||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||| Sbjct: 149080 ttttggaatgaaaaactatgacttcgtagttttcg-ttagtagaaacctaattcattaaa 149022 Query: 593 attccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcg 652 ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct: 149021 attccgtccagtaaaacggaagaattataaatttctaaaataatagataggaataccgcg 148962 Query: 653 aataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 148961 aataaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 148915
>ref|XM_481021.1| Oryza sativa (japonica cultivar-group), mRNA Length = 222 Score = 168 bits (85), Expect = 2e-38 Identities = 107/113 (94%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 588 ttaaaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaata 647 |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 214 ttaaaattccgtccagtaaaacggaagaattataaatttctaaaataatagataggaata 155 Query: 648 tagcgaataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 154 ccgcgaataaagccattgcgacccccataaaa-ggagtagtcccccaacccgg 103
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 127 bits (64), Expect = 5e-26 Identities = 111/120 (92%), Gaps = 5/120 (4%) Strand = Plus / Plus Query: 8 tagaaattatcttgttgtgatcctatgaatcg-ttca-ttaaaaccttagattc-tacta 64 ||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||| Sbjct: 95718 tagaaattatcttgttgcgatcctatgaatcaattcaattaaaaccttagattcatacta 95777 Query: 65 gagcc-cgatgatttagtctcaagctaaacaaaaggcaagggttcttcgaataagaaccg 123 ||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 95778 gagccacaatgattgagtctcaagctaaacaaaaggcaa-ggttcttcgaataagaaccg 95836
>gb|AY297608.1| Wollastonia biflora psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 1005 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 242 tattccgtgttccagatactagaataaata---tccgacgaaggagaaccatctctatca 186 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 185 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 126 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 125 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 75
>gb|AY297607.1| Wamalchitamia aurantiaca psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exon 1 and partial cds; chloroplast Length = 801 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 242 tattccgtgttccagatactagaataaata---tccgacgaaggagaaccatctctatca 186 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 185 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 126 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 125 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 75
>gb|AY297606.1| Otopappus epaleaceus psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 976 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 242 tattccgtgttccagatactagaataaata---tccgacgaaggagaaacatctctatca 186 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 185 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 126 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 125 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 75
>gb|AY297605.1| Jefea pringlei psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 1008 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 242 tattccgtgttccagatactagaataaata---tccgacgaaggagaaccatctctatca 186 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 185 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 126 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 125 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 75
>gb|AY297604.1| Elaphandra paucipunctata psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 917 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 231 tattccgtgttccagatactagaataaata---tccgacgaaggagaaccatctctatca 175 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 174 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 115 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 114 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 64
>gb|AY297603.1| Dimerostemma brasilianum psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 979 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 243 tattccgtgttccagatactagaataaata---tccgacgaaagagaaccatctctatca 187 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 186 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 127 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 126 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 76
>gb|AY297602.1| Dimerostemma annuum psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exon 1 and partial cds; chloroplast Length = 848 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 243 tattccgtgttccagatactagaataaata---tccgacgaaagagaaccatctctatca 187 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 186 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 127 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 126 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 76
>gb|AY297601.1| Blainvillea rhomboidea psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 989 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 242 tattccgtgttccagatactagaataaata---tccgacgaaggagaaccatctctatca 186 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 185 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 126 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 125 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 75
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| |||||||||||||||| |||||||| || |||||| ||||| ||||| || Sbjct: 74956 tattccgtgttccagatactataataaata---tccgacgaagtagaaccatctctatca 74900 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 74899 agatgacagacccattctctgtaatatcaataggatcaattataacaagtcacacactca 74840 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 74839 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 74789 Score = 87.7 bits (44), Expect = 5e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| ||||||||||||||| || ||||| |||||||| |||| | Sbjct: 74703 aaattccatccaataaaacggaagaattataaatctccaaaataatagatagaaataccg 74644 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | |||| |||||||||||| ||||| |||||| Sbjct: 74643 caaatagagccattgcgacacccatcaaaggg 74612
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| |||||| ||||||||||||| |||| || |||||| ||||||||||| || Sbjct: 79934 tattccgtgtttcagatactagaatgaata---tccgacgaagtagaatcatctctatca 79878 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| || ||||||||||||||||||||||||||||||||| Sbjct: 79877 agatgacagacccattctctgtactaccaataggatcaattctaacaagtcacacactca 79818 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 |||||| || |||| ||||| ||||||||||||||||||| |||| Sbjct: 79817 tattccggaaatacagaaacaaagaaattccgcggtcgaactaccaaaata 79767 Score = 79.8 bits (40), Expect = 1e-11 Identities = 89/104 (85%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| |||| ||||| |||||||||||||| || ||||| ||||||||||||| | Sbjct: 79687 aaattccgtccaataaaacagaagaattataaatctccaaaataatagataggaataccg 79628 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | |||| |||||||||||| ||||| ||| |||||||| ||||| Sbjct: 79627 caaatagagccattgcgacacccattaaa-ggagtagttcccca 79585 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 270 ttgcgaggtcttaatagtgagtatgaatcatagttc 305 ||||||||||| |||| | ||||||||||||||||| Sbjct: 79996 ttgcgaggtctgaatattaagtatgaatcatagttc 79961
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 119 bits (60), Expect = 1e-23 Identities = 142/171 (83%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| |||||||||||||||| |||||||| || |||||| ||||| ||||| || Sbjct: 74954 tattccgtgttccagatactataataaata---tccgacgaagtagaaccatctctatca 74898 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 74897 agatgacagacccattctctgtaatatcaataggatcaattataacaagtcacacactca 74838 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 74837 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 74787 Score = 87.7 bits (44), Expect = 5e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| ||||||||||||||| || ||||| |||||||| |||| | Sbjct: 74701 aaattccatccaataaaacggaagaattataaatctccaaaataatagatagaaataccg 74642 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | |||| |||||||||||| ||||| |||||| Sbjct: 74641 caaatagagccattgcgacacccatcaaaggg 74610
>gb|DQ069624.1| Yucca schidigera photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast Length = 228 Score = 117 bits (59), Expect = 5e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| | Sbjct: 220 aaattccatccagtaaaacggaagaattataaatttccaaaataatagataggaatatcg 161 Query: 651 cgaataaagccattgcgacccccataa 677 | |||| |||||||||||| ||||||| Sbjct: 160 caaatagagccattgcgactcccataa 134
>gb|AY297598.1| Angelphytum bahiense psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exons 1, 2 and partial cds; chloroplast Length = 961 Score = 115 bits (58), Expect = 2e-22 Identities = 120/140 (85%), Gaps = 3/140 (2%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || |||||| |||| ||||| || Sbjct: 243 tattccgtgttccagatactagaataaata---tccgacgaaagagaaccatctctatca 187 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 186 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 127 Query: 449 tattccagagataccgaaac 468 ||||||||| |||| ||||| Sbjct: 126 tattccagaaatacagaaac 107
>gb|S67282.1|S67282S1 Zea mays psbB operon operon, partial sequence; chloroplast Length = 136 Score = 115 bits (58), Expect = 2e-22 Identities = 116/135 (85%), Gaps = 2/135 (1%) Strand = Plus / Minus Query: 434 caagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaactacc 493 |||||||||||||||||||||||||||||| |||| | || ||||||||||||| Sbjct: 136 caagtcacacactcatattccagagataccaaaacaaaaaaat-ccacggtcgaactacc 78 Query: 494 ataatatctagaaatgtagagcttaaactagaaaggc-ttttttggatggaaaaactctg 552 | ||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||| || Sbjct: 77 agaatgtctagaaatgtggagcttaaagtagaaaggctttttttggatggaaaaactatg 18 Query: 553 acttcctagttttag 567 | || ||||||||| Sbjct: 17 aagtcatagttttag 3
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| ||||||||||| ||||||||| ||||| ||||| | Sbjct: 77575 atctatttcgtgttccaaatattagaataaata---tctgacgaagtagaaccatctcta 77519 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | |||| |||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 77518 tcaagatgacagacccattctctgtactatcaataggatcaattataacaagtcacacac 77459 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 77458 tcatactccggaaatacagaaac 77436 Score = 87.7 bits (44), Expect = 5e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| ||||||||||||||| || ||||| |||||||| |||| | Sbjct: 77314 aaattccatccaataaaacggaagaattataaatctccaaaataatagatagaaataccg 77255 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 77254 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 77212 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 77620 cgaggtctgaatattaagtatgaatcatagttc 77588
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| | ||||||||| ||||||||| ||||| ||||| | Sbjct: 76802 atctatttcgtgttccaaatattcgaataaata---tctgacgaagtagaaccatctcta 76746 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | ||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 76745 tcaagataacagacccattctctgtactatcaataggatcaattataacaagtcacacac 76686 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 76685 tcatactccggaaatacagaaac 76663 Score = 71.9 bits (36), Expect = 3e-09 Identities = 88/104 (84%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||||| ||||| |||||||||||||| || ||||| |||||||| |||| | Sbjct: 76541 aaatcccatccaataaaacagaagaattataaatctccaaaataatagatagaaataccg 76482 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 76481 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 76439 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 76847 cgaggtctgaatattaagtatgaatcatagttc 76815
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| | ||||||||| ||||||||| ||||| ||||| | Sbjct: 76965 atctatttcgtgttccaaatattcgaataaata---tctgacgaagtagaaccatctcta 76909 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | ||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 76908 tcaagataacagacccattctctgtactatcaataggatcaattataacaagtcacacac 76849 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 76848 tcatactccggaaatacagaaac 76826 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||||| ||||| |||||||||||||| || ||||| |||||||| |||| | Sbjct: 76704 aaatcccatccaataaaacagaagaattataaatctccaaaataatagatagaaataccg 76645 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | ||||||||||||||||| ||||| |||||| Sbjct: 76644 caaataaagccattgcgacacccatcaaaggg 76613 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 77010 cgaggtctgaatattaagtatgaatcatagttc 76978
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| | ||||||||| ||||||||| ||||| ||||| | Sbjct: 76962 atctatttcgtgttccaaatattcgaataaata---tctgacgaagtagaaccatctcta 76906 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | ||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 76905 tcaagataacagacccattctctgtactatcaataggatcaattataacaagtcacacac 76846 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 76845 tcatactccggaaatacagaaac 76823 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||||| ||||| |||||||||||||| || ||||| |||||||| |||| | Sbjct: 76701 aaatcccatccaataaaacagaagaattataaatctccaaaataatagatagaaataccg 76642 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | ||||||||||||||||| ||||| |||||| Sbjct: 76641 caaataaagccattgcgacacccatcaaaggg 76610 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 77007 cgaggtctgaatattaagtatgaatcatagttc 76975
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| | ||||||||| ||||||||| ||||| ||||| | Sbjct: 76868 atctatttcgtgttccaaatattcgaataaata---tctgacgaagtagaaccatctcta 76812 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | ||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 76811 tcaagataacagacccattctctgtactatcaataggatcaattataacaagtcacacac 76752 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 76751 tcatactccggaaatacagaaac 76729 Score = 71.9 bits (36), Expect = 3e-09 Identities = 88/104 (84%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||||| ||||| |||||||||||||| || ||||| |||||||| |||| | Sbjct: 76607 aaatcccatccaataaaacagaagaattataaatctccaaaataatagatagaaataccg 76548 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 76547 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 76505 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 76913 cgaggtctgaatattaagtatgaatcatagttc 76881
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| ||||||||||| ||||||||| ||||| ||||| | Sbjct: 77573 atctatttcgtgttccaaatattagaataaata---tctgacgaagtagaaccatctcta 77517 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | |||| |||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 77516 tcaagatgacagacccattctctgtactatcaataggatcaattataacaagtcacacac 77457 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 77456 tcatactccggaaatacagaaac 77434 Score = 87.7 bits (44), Expect = 5e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| ||||||||||||||| || ||||| |||||||| |||| | Sbjct: 77312 aaattccatccaataaaacggaagaattataaatctccaaaataatagatagaaataccg 77253 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 77252 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 77210 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 77618 cgaggtctgaatattaagtatgaatcatagttc 77586
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 113 bits (57), Expect = 8e-22 Identities = 122/143 (85%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| | ||||||||| ||||||||| ||||| ||||| | Sbjct: 76813 atctatttcgtgttccaaatattcgaataaata---tctgacgaagtagaaccatctcta 76757 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | ||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 76756 tcaagataacagacccattctctgtactatcaataggatcaattataacaagtcacacac 76697 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 76696 tcatactccggaaatacagaaac 76674 Score = 71.9 bits (36), Expect = 3e-09 Identities = 88/104 (84%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||||| ||||| |||||||||||||| || ||||| |||||||| |||| | Sbjct: 76552 aaatcccatccaataaaacagaagaattataaatctccaaaataatagatagaaataccg 76493 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 76492 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 76450 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 76858 cgaggtctgaatattaagtatgaatcatagttc 76826
>gb|AY297600.1| Baltimora recta psbH-petB intergenic spacer and PetB-like (petB) gene, partial sequence; chloroplast Length = 1002 Score = 111 bits (56), Expect = 3e-21 Identities = 141/171 (82%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| |||||||||||||||| |||||||| || |||||| |||| ||||| || Sbjct: 242 tattacgtgttccagatactaaaataaata---tccgacgaaggagaaccatctctatca 186 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 185 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 126 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 125 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 75
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 109 bits (55), Expect = 1e-20 Identities = 82/91 (90%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| ||||||||||||||| || ||||| ||||||| |||||| | Sbjct: 79109 aaattccatccagtaaaacggaagaattataaatctccaaaataatagataagaatatcg 79050 Query: 651 cgaataaagccattgcgacccccataaaagg 681 | ||||||||||||||||| ||||| ||||| Sbjct: 79049 caaataaagccattgcgacacccatcaaagg 79019 Score = 81.8 bits (41), Expect = 3e-12 Identities = 73/86 (84%) Strand = Plus / Minus Query: 408 tgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||| ||||||||||||||||| |||||||||||||||||||||||| || |||| |||| Sbjct: 79289 tgtactatcaataggatcaattataacaagtcacacactcatattccggaaatacagaaa 79230 Query: 468 cnnnnnnnttccgcggtcgaactacc 493 | || ||||||||||||||| Sbjct: 79229 caaataaatttcgcggtcgaactacc 79204
>gb|AY297599.1| Angelphytum matogrossense psbH-petB intergenic spacer, partial sequence; and PetB (petB) gene, exon 1 and partial cds; chloroplast Length = 824 Score = 107 bits (54), Expect = 5e-20 Identities = 119/140 (85%), Gaps = 3/140 (2%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||||||||| || | |||| |||| ||||| || Sbjct: 243 tattccgtgttccagatactagaataaata---tccgccgaaagagaaccatctctatca 187 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 186 agatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactca 127 Query: 449 tattccagagataccgaaac 468 ||||||||| |||| ||||| Sbjct: 126 tattccagaaatacagaaac 107
>emb|Y13328.1|PDCPPSBO P.deltoides chloroplast DNA for psbB operon Length = 3637 Score = 107 bits (54), Expect = 5e-20 Identities = 97/110 (88%), Gaps = 1/110 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||| | Sbjct: 3465 aaattccatccagtaaaacggaagaattataaatctccaaaataatagataggaataccg 3406 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 | |||| |||||||||||| ||||| ||| |||||||| ||||| ||||| Sbjct: 3405 caaatagagccattgcgacacccatcaaa-ggagtagttccccaccccgg 3357 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 421 ggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 ||||| ||| ||||||||| ||||||||||||||||| |||| |||| Sbjct: 3637 ggatccattataacaagtcgcacactcatattccagaaatacagaaa 3591
>emb|X93203.1|PDPSBTH P.deltoides chloroplast psbT and psbH genes Length = 984 Score = 107 bits (54), Expect = 5e-20 Identities = 97/110 (88%), Gaps = 1/110 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||| | Sbjct: 812 aaattccatccagtaaaacggaagaattataaatctccaaaataatagataggaataccg 753 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 | |||| |||||||||||| ||||| ||| |||||||| ||||| ||||| Sbjct: 752 caaatagagccattgcgacacccatcaaa-ggagtagttccccaccccgg 704 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 421 ggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 ||||| ||| ||||||||| ||||||||||||||||| |||| |||| Sbjct: 984 ggatccattataacaagtcgcacactcatattccagaaatacagaaa 938
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 105 bits (53), Expect = 2e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 578 acctaattggttaaaattccatccagtaaaatggaagaattataaatttctaaaatgata 637 |||||| | ||| |||||||||||| |||| ||||||||||||||| || ||||| ||| Sbjct: 76064 acctaactcgttgaaattccatccaacaaaacggaagaattataaatctccaaaataata 76005 Query: 638 gataggaatatagcgaataaagccattgcgacccccataaa 678 ||||||||||| || ||||||||||||||||| |||||||| Sbjct: 76004 gataggaatatggcaaataaagccattgcgacacccataaa 75964 Score = 95.6 bits (48), Expect = 2e-16 Identities = 113/137 (82%) Strand = Plus / Minus Query: 358 aatatctgacgaattagaatcatcttgatagagataacaggccctttctatgtattatca 417 |||||| |||||| |||| |||||| || ||||| |||| | |||| |||| ||||| Sbjct: 76273 aatatccgacgaagcagaaccatctttatcgagatgacagatctattctctgtactatca 76214 Query: 418 ataggatcaattctaacaagtcacacactcatattccagagataccgaaacnnnnnnntt 477 |||||||||||| |||||||||||||||||||||||| || |||||||||| || Sbjct: 76213 ataggatcaattataacaagtcacacactcatattccggaaataccgaaacaacggaatt 76154 Query: 478 ccgcggtcgaactacca 494 || |||||||||||||| Sbjct: 76153 ccacggtcgaactacca 76137
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 105 bits (53), Expect = 2e-19 Identities = 118/139 (84%), Gaps = 3/139 (2%) Strand = Plus / Minus Query: 330 atttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgataga 389 ||||||||||||| ||| ||||||||||| ||||||||| ||||| ||||| || | Sbjct: 77331 atttcgtgttccaaatattagaataaata---tctgacgaagtagaaccatctctatcaa 77275 Query: 390 gataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactcat 449 ||| |||| ||| |||| |||| ||||||||||||||||| ||||||||||||||||||| Sbjct: 77274 gatgacagacccattctctgtactatcaataggatcaattataacaagtcacacactcat 77215 Query: 450 attccagagataccgaaac 468 | ||| || |||| ||||| Sbjct: 77214 actccggaaatacagaaac 77196 Score = 87.7 bits (44), Expect = 5e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| ||||||||||||||| || ||||| |||||||| |||| | Sbjct: 77074 aaattccatccaataaaacggaagaattataaatctccaaaataatagatagaaataccg 77015 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 77014 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 76972 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 77380 cgaggtctgaatattaagtatgaatcatagttc 77348
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 103 bits (52), Expect = 8e-19 Identities = 140/171 (81%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| ||||||||||||||||||| ||||| || |||||| |||| ||||| || Sbjct: 74375 tattccgtgttccagatactagaaaaaata---tccgacgaaggagaaccatctctatca 74319 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| |||| |||| ||| ||||||||||||| |||||||||||||||||| Sbjct: 74318 agatgacagacccattctctgtactattaataggatcaattataacaagtcacacactca 74259 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| |||| |||||||||||||| |||| Sbjct: 74258 tattccagaaatacagaaacaaagaaattccacggtcgaactaccaaaata 74208 Score = 87.7 bits (44), Expect = 5e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| |||||||||||||| |||||||| |||||||| |||| | Sbjct: 74122 aaattccatccaataaaacagaagaattataaatctctaaaataatagatagaaataccg 74063 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | |||| |||||||||||| ||||| |||||| Sbjct: 74062 caaatagagccattgcgacgcccatcaaaggg 74031 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 263 agtctggttgcgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| ||||||| | |||| | ||||||||||||||||| Sbjct: 74442 agtctggtcgcgaggtttgaatattaagtatgaatcatagttc 74400
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 103 bits (52), Expect = 8e-19 Identities = 140/171 (81%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttgatag 388 |||| |||||||| |||||||||||||||| || |||| | ||||| || || || Sbjct: 76993 tattccgtgttccggatactagaataaata---tccgacggagtagaaccacctctatca 76937 Query: 389 agataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacactca 448 |||| |||| ||| ||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct: 76936 agatgacagacccgttcactgtactatcaataggatcaattataacaagtcacacactca 76877 Query: 449 tattccagagataccgaaacnnnnnnnttccgcggtcgaactaccataata 499 ||||||||| |||| ||||| ||||||||||||||||||| |||| Sbjct: 76876 tattccagaaatacagaaacaaagaaattccgcggtcgaactaccaaaata 76826 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||| |||||| ||||| ||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 76733 aaatttcatccaataaaacggaagaattataaatctccaaaataatagatagaaatatcg 76674 Query: 651 cgaataaagccattgcgacccccataaaagg 681 | |||| ||||||||||| ||||| ||||| Sbjct: 76673 caaatagggccattgcgacacccatcaaagg 76643 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 272 gcgaggtcttaatagtgagtatgaatcatagttc 305 ||||||||| |||| | ||||||||||||||||| Sbjct: 77051 gcgaggtctgaatattaagtatgaatcatagttc 77018
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 103 bits (52), Expect = 8e-19 Identities = 123/146 (84%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 323 tctatctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatct 382 ||||| |||| |||| ||||||||||||||| |||| || ||||| ||||||||||| Sbjct: 74781 tctatatattccgtgctccagatactagaatgaata---tccgacgagatagaatcatct 74725 Query: 383 tgatagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcaca 442 || ||||| |||| || |||| |||| |||||||| |||||||| |||||||||||| Sbjct: 74724 ctatcgagatgacagatccattctctgtactatcaataagatcaattataacaagtcaca 74665 Query: 443 cactcatattccagagataccgaaac 468 |||||||||||| || |||||||||| Sbjct: 74664 cactcatattccggaaataccgaaac 74639 Score = 101 bits (51), Expect = 3e-18 Identities = 106/123 (86%), Gaps = 1/123 (0%) Strand = Plus / Minus Query: 578 acctaattggttaaaattccatccagtaaaatggaagaattataaatttctaaaatgata 637 |||||||| | | ||| |||||||||||||| ||||||||||||||| || ||||| ||| Sbjct: 74540 acctaattcggtgaaactccatccagtaaaacggaagaattataaatctccaaaataata 74481 Query: 638 gataggaatatagcgaataaagccattgcgacccccataaaagggagtagtcccccaacc 697 |||||||||| || |||| ||||||||||| ||||||||| |||||||| ||||| || Sbjct: 74480 cataggaatatcgcaaatagggccattgcgactcccataaaa-ggagtagttccccatcc 74422 Query: 698 cgg 700 ||| Sbjct: 74421 cgg 74419
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 101 bits (51), Expect = 3e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 372 tagaatcatcttgatagagataacaggccctttctatgtattatcaataggatcaattct 431 ||||||||||||||||||||| ||| || |||| |||||||||||||||||||||| | Sbjct: 76681 tagaatcatcttgatagagatgacaaatccattctttgtattatcaataggatcaattat 76622 Query: 432 aacaagtcacacactcatattcc 454 |||||||||||| |||||||||| Sbjct: 76621 aacaagtcacacgctcatattcc 76599 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| || |||||||||||||||||||| ||||||| ||||| | Sbjct: 76396 aaattccatccagtaaaacagatgaattataaatttctaaaataatagataaaaatattg 76337 Query: 651 cgaataaagccattgcgacccccataa 677 | |||| ||||||||| || ||||||| Sbjct: 76336 caaatagagccattgcaactcccataa 76310 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 268 ggttgcgaggtcttaatagtgagtatgaatcatagttc 305 ||||||||||||| |||| | |||||||||||||||| Sbjct: 76786 ggttgcgaggtctgaataataggtatgaatcatagttc 76749
>gb|DQ069623.1| Typha latifolia photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast Length = 225 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 592 aattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagc 651 ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| || Sbjct: 216 aattccatccagtaaaacagaagagttataaatttccaaaataatagataggaatatcgc 157 Query: 652 gaataaagccattgcgacccccataa 677 |||| |||||||||||| ||||||| Sbjct: 156 aaatagagccattgcgactcccataa 131
>gb|DQ069619.1| Acorus americanus photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast Length = 219 Score = 99.6 bits (50), Expect = 1e-17 Identities = 93/106 (87%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 595 tccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaa 654 |||||||||||||| ||||||||||||||| || ||||| ||| |||||||||| || || Sbjct: 207 tccatccagtaaaacggaagaattataaatctccaaaataatacataggaatatcgcaaa 148 Query: 655 taaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 || ||||||||||| ||||||||| |||||||| ||||| ||||| Sbjct: 147 tagggccattgcgactcccataaaa-ggagtagttccccatcccgg 103
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 593 attccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcg 652 |||||||||||||||| ||||||||||||||| || ||||| || ||||| ||||| || Sbjct: 81335 attccatccagtaaaacggaagaattataaatctccaaaataattgatagaaatattgca 81276 Query: 653 aataaagccattgcgacccccataaa 678 |||| ||||||||||||||||||||| Sbjct: 81275 aatagagccattgcgacccccataaa 81250 Score = 81.8 bits (41), Expect = 3e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 416 caataggatcaattctaacaagtcacacactcatattccagagataccgaaac 468 |||||||||||||| |||||||||||||||||||||||| || |||||||||| Sbjct: 81496 caataggatcaattataacaagtcacacactcatattccggaaataccgaaac 81444
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 97.6 bits (49), Expect = 5e-17 Identities = 120/143 (83%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 ||||||||||||||||| ||| ||||| ||||| ||||||||| ||||| |||| | Sbjct: 77806 atctatttcgtgttccaaatattagaagaaata---tctgacgaagtagaaccatcccta 77750 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 | |||| |||| ||| |||| |||| ||||||||||||||||| ||||||||||||||| Sbjct: 77749 tcaagatgacagacccattctctgtactatcaataggatcaattataacaagtcacacac 77690 Query: 446 tcatattccagagataccgaaac 468 ||||| ||| || |||| ||||| Sbjct: 77689 tcatactccggaaatacagaaac 77667 Score = 87.7 bits (44), Expect = 5e-14 Identities = 90/104 (86%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||| ||||| ||||||||||||||| || ||||| |||||||| |||| | Sbjct: 77545 aaattccatccaataaaacggaagaattataaatctccaaaataatagatagaaataccg 77486 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | ||||| ||||||||||| ||||| ||| |||||||| ||||| Sbjct: 77485 caaataaggccattgcgacacccatcaaa-ggagtagttcccca 77443 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 77851 cgaggtctgaatattaagtatgaatcatagttc 77819
>gb|AC132565.28| Medicago truncatula clone mth2-4a8, complete sequence Length = 134155 Score = 95.6 bits (48), Expect = 2e-16 Identities = 77/89 (86%) Strand = Plus / Plus Query: 406 tatgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccga 465 |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| || Sbjct: 80446 tatgtactatcaataggatcaattgtaacaagtcacacactcatattccagaaatacaga 80505 Query: 466 aacnnnnnnnttccgcggtcgaactacca 494 ||| || |||||||||||||||| Sbjct: 80506 aacaaagaagtttcgcggtcgaactacca 80534 Score = 67.9 bits (34), Expect = 4e-08 Identities = 86/102 (84%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 599 tccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaataaa 658 |||||||||||||| ||||||||||| |||||||| ||||| || ||||| | |||| | Sbjct: 80651 tccagtaaaatggacgaattataaatctctaaaataatagagagaaatatcgtaaataga 80710 Query: 659 gccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||| | ||||| |||||| ||||| ||||| ||||| Sbjct: 80711 gccattgcaatacccatcaaaggg-gtagttccccatcccgg 80751
>emb|X07106.1|CHSOPSBO Spinach plastid psbB operon with genes for 10 kD phosphoprotein associated with photosystem II (psbH), apocytochrome b6 and subunit 4 (petD) of cytochrome b6f complex Length = 4336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 91/104 (87%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| ||| |||||||||||||| ||||| ||||||| ||||| | Sbjct: 450 aaattccatccagtaaaacggacgaattataaatttccaaaataatagataagaatactg 391 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | |||||||||||||| || ||||| ||| |||||||| ||||| Sbjct: 390 caaataaagccattgcaactcccatcaaa-ggagtagttcccca 348 Score = 87.7 bits (44), Expect = 5e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 408 tgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||| Sbjct: 634 tgtattatcaataggatcaattataacaagtcacacactcatattccggaaatacagaaa 575
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 95.6 bits (48), Expect = 2e-16 Identities = 91/104 (87%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| ||| |||||||||||||| ||||| ||||||| ||||| | Sbjct: 73354 aaattccatccagtaaaacggacgaattataaatttccaaaataatagataagaatactg 73295 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | |||||||||||||| || ||||| ||| |||||||| ||||| Sbjct: 73294 caaataaagccattgcaactcccatcaaa-ggagtagttcccca 73252 Score = 87.7 bits (44), Expect = 5e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 408 tgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||| Sbjct: 73538 tgtattatcaataggatcaattataacaagtcacacactcatattccggaaatacagaaa 73479
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/130 (85%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 |||||||||||| |||||||||| |||| |||| || |||||| || || |||||||| Sbjct: 74068 atctatttcgtgctccagatactcgaatgaata---tccgacgaaataaaaccatcttga 74012 Query: 386 tagagataacaggccct-ttctatgtattatcaataggatcaattctaacaagtcacaca 444 || |||| |||| ||| |||| |||| |||| ||||| ||||||||||||||||||||| Sbjct: 74011 taaagatgacagacccccttctctgtactatccatagggtcaattctaacaagtcacaca 73952 Query: 445 ctcatattcc 454 |||||||||| Sbjct: 73951 ctcatattcc 73942 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||||||||||| || || ||||||||||| || ||||| ||||||||||||| | Sbjct: 73801 aaattccatccagtagaacagaggaattataaatctccaaaataatagataggaataccg 73742 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | |||| |||||||| || ||||| |||||| Sbjct: 73741 caaatagtgccattgcaacacccatcaaaggg 73710
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/130 (85%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 |||||||||||| |||||||||| |||| |||| || |||||| || || |||||||| Sbjct: 74962 atctatttcgtgctccagatactcgaatgaata---tccgacgaagtaaaaccatcttga 74906 Query: 386 tagagataacaggccct-ttctatgtattatcaataggatcaattctaacaagtcacaca 444 || |||| |||| ||| |||| |||| |||| ||||| ||||||||||||||||||||| Sbjct: 74905 taaagatgacagaccccattctctgtactatccatagggtcaattctaacaagtcacaca 74846 Query: 445 ctcatattcc 454 |||||||||| Sbjct: 74845 ctcatattcc 74836 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||||||||||| || |||||||||||||| || ||||| ||||||||||||| | Sbjct: 74695 aaattccatccagtagaacagaagaattataaatctccaaaataatagataggaataccg 74636 Query: 651 cgaataaagccattgcgacccccataaaaggg 682 | |||| ||||||||| || ||||| |||||| Sbjct: 74635 caaatagagccattgcaacacccatcaaaggg 74604
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 95.6 bits (48), Expect = 2e-16 Identities = 91/104 (87%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||| | Sbjct: 79467 aaattccgtccagtaaaacagaagaattataaatttccaaaataatagataggaatactg 79408 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtccccca 694 | |||| |||||||||||| ||||| ||| |||||||| ||||| Sbjct: 79407 caaatagagccattgcgacacccatcaaa-ggagtagttcccca 79365 Score = 71.9 bits (36), Expect = 3e-09 Identities = 116/142 (81%), Gaps = 3/142 (2%) Strand = Plus / Minus Query: 326 atctatttcgtgttccagatactagaataaataatatctgacgaattagaatcatcttga 385 |||||||||||| |||||||||| |||| |||||| ||||| || || ||||| | Sbjct: 79736 atctatttcgtgctccagatactcgaat---gaatatccgacgaggtaaaaccatctata 79680 Query: 386 tagagataacaggccctttctatgtattatcaataggatcaattctaacaagtcacacac 445 || |||| |||| || || | |||| ||||||||| ||||||| ||||||||||||||| Sbjct: 79679 taaagatgacagatccattttctgtactatcaatagtatcaattataacaagtcacacac 79620 Query: 446 tcatattccagagataccgaaa 467 ||||||||| || |||| |||| Sbjct: 79619 tcatattccggaaatacagaaa 79598
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 91.7 bits (46), Expect = 3e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 580 ctaattggttaaaattccatccagtaaaatggaagaattataaatttctaaaatgataga 639 ||||||| || ||||||| |||||||||||||||||||||||||| || ||||| ||| | Sbjct: 77004 ctaattgcttgaaattccgtccagtaaaatggaagaattataaatctccaaaataataca 76945 Query: 640 taggaatatagcgaataaagccattgcgacccccataaaagg 681 ||||||||| || |||||| ||| ||||| ||||| ||||| Sbjct: 76944 taggaatatcgcaaataaactcatcgcgacacccattaaagg 76903 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 413 tatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||| ||||||||||||||||||||||||||||||||||||| || |||| |||| Sbjct: 77173 tatccataggatcaattctaacaagtcacacactcatattccggaaatacagaaa 77119
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 91.7 bits (46), Expect = 3e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 580 ctaattggttaaaattccatccagtaaaatggaagaattataaatttctaaaatgataga 639 ||||||| || ||||||| |||||||||||||||||||||||||| || ||||| ||| | Sbjct: 77239 ctaattgcttgaaattccgtccagtaaaatggaagaattataaatctccaaaataataca 77180 Query: 640 taggaatatagcgaataaagccattgcgacccccataaaagg 681 ||||||||| || |||||| ||| ||||| ||||| ||||| Sbjct: 77179 taggaatatcgcaaataaactcatcgcgacacccattaaagg 77138 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 413 tatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||| ||||||||||||||||||||||||||||||||||||| || |||| |||| Sbjct: 77408 tatccataggatcaattctaacaagtcacacactcatattccggaaatacagaaa 77354
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 87.7 bits (44), Expect = 5e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 413 tatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaac 468 |||||||||||||||||||||||||||||||||||||||||| || |||| ||||| Sbjct: 72552 tatcaataggatcaattctaacaagtcacacactcatattccggaaatacagaaac 72497 Score = 83.8 bits (42), Expect = 7e-13 Identities = 94/110 (85%), Gaps = 1/110 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| || |||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 72372 aaattccgtctagtaaaatagaagaattataaatttccaaaataatagatagaaatattg 72313 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 | |||| ||||||||| | ||||| ||| |||||||| ||||| ||||| Sbjct: 72312 caaatagagccattgcaatacccatcaaa-ggagtagttccccaccccgg 72264 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 327 tctatttcgtgttccagatactagaataaata 358 |||||| ||||||||||||||||||||||||| Sbjct: 72640 tctattccgtgttccagatactagaataaata 72609
>gb|DQ069622.1| Ranunculus macranthus photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast Length = 234 Score = 85.7 bits (43), Expect = 2e-13 Identities = 92/107 (85%), Gaps = 1/107 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||||||||||||||||| ||| ||||||||||| || | ||| ||||||| ||||| | Sbjct: 226 aaattccatccagtaaaacggatgaattataaatctcgagaataatagataagaatactg 167 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtcccccaacc 697 | |||| |||||||| |||||||| |||||| |||||||||||||| Sbjct: 166 caaatagtgccattgcaacccccatcaaaggg-gtagtcccccaacc 121
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||| ||||||| ||||||||||||||| || ||||| ||||||||||||| | Sbjct: 80486 aaataccatctagtaaaacggaagaattataaatctccaaaataatagataggaatactg 80427 Query: 651 cgaataaagccattgcgacccccataa 677 | |||| |||||||||||| ||||||| Sbjct: 80426 caaatagagccattgcgacacccataa 80400 Score = 69.9 bits (35), Expect = 1e-08 Identities = 55/64 (85%) Strand = Plus / Minus Query: 431 taacaagtcacacactcatattccagagataccgaaacnnnnnnnttccgcggtcgaact 490 |||||||||||||||||||||||| || |||||||||| ||||||||||||||| Sbjct: 80644 taacaagtcacacactcatattccggaaataccgaaacaaaagaattccgcggtcgaact 80585 Query: 491 acca 494 |||| Sbjct: 80584 acca 80581 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 7 atagaaattatcttgttgtgatcctatgaatc 38 |||| ||||||||||||| || |||||||||| Sbjct: 81100 ataggaattatcttgttgagaccctatgaatc 81069
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 83.8 bits (42), Expect = 7e-13 Identities = 74/87 (85%) Strand = Plus / Plus Query: 408 tgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||| ||||||||||||||||| |||||||||||||||||||||||| || |||| |||| Sbjct: 51419 tgtactatcaataggatcaattgtaacaagtcacacactcatattccggaaatacagaaa 51478 Query: 468 cnnnnnnnttccgcggtcgaactacca 494 | || |||||||||||||||| Sbjct: 51479 caaagaagtttcgcggtcgaactacca 51505 Score = 67.9 bits (34), Expect = 4e-08 Identities = 86/102 (84%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 599 tccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaataaa 658 |||||||||||||| ||||||||||| |||||||| ||||| || |||| || |||| | Sbjct: 51622 tccagtaaaatggacgaattataaatctctaaaataatagagagaaataccgcaaataga 51681 Query: 659 gccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||| | ||||| |||||| ||||| ||||| ||||| Sbjct: 51682 gccattgcaatacccatcaaaggg-gtagttccccatcccgg 51722
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 83.8 bits (42), Expect = 7e-13 Identities = 94/110 (85%), Gaps = 1/110 (0%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| || ||||||||||| ||||||||||| || ||||| |||||||| ||||| | Sbjct: 73334 aaattccgtcgagtaaaatggacgaattataaatctccaaaataatagatagaaatatcg 73275 Query: 651 cgaataaagccattgcgacccccataaaagggagtagtcccccaacccgg 700 | |||| ||||||||| || ||||| ||| |||||||| ||||| ||||| Sbjct: 73274 caaatagagccattgcaacacccatcaaa-ggagtagttccccaccccgg 73226 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 257 tttttcagtctggttgcgaggtcttaatagtgagtatgaatcatagttc 305 ||||| |||| ||||||||||||| |||| | ||||||||||||||||| Sbjct: 73678 tttttaagtccggttgcgaggtctaaatatttagtatgaatcatagttc 73630 Score = 44.1 bits (22), Expect = 0.61 Identities = 46/54 (85%) Strand = Plus / Minus Query: 415 tcaataggatcaattctaacaagtcacacactcatattccagagataccgaaac 468 ||||||||||| ||| |||||| | |||||||||||||| || |||| ||||| Sbjct: 73516 tcaataggatccattaaaacaagccgcacactcatattccggaaatacagaaac 73463
>gb|DQ069621.1| Nuphar advena photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast Length = 219 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 |||| ||||||||||||| ||||| |||||||| || ||||| ||||||||||||| | Sbjct: 211 aaatcccatccagtaaaacagaagagttataaatctccaaaataatagataggaatactg 152 Query: 651 cgaataaagccattgcgacccccataaa 678 | |||| |||||||||||| |||||||| Sbjct: 151 caaatagagccattgcgacacccataaa 124
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 190718 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 606 aaatggaagaattataaatttctaaaatgatagataggaatatagcgaataaagccattg 665 ||||||||||| |||||||||| ||||| ||||||||||||| || |||||||||||| Sbjct: 186413 aaatggaagaactataaatttcaaaaataatagataggaataccacgtataaagccattg 186472 Query: 666 cgaccccc 673 |||||||| Sbjct: 186473 cgaccccc 186480
>gb|DQ384532.1| Panax ginseng clone PG6L-8 PSII phosphoprotein mRNA, complete cds Length = 313 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||| |||||| ||||| ||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 253 aaatttcatccaataaaacggaagaattataaatctccaaaataatagatagaaatatcg 194 Query: 651 cgaataaagccattgcgacccccataaaagg 681 | |||| ||||||||||| ||||| ||||| Sbjct: 193 caaatagggccattgcgacacccatcaaagg 163
>gb|AF153442.1|AF153442 Pisum sativum chloroplast psbB operon, complete sequence Length = 5662 Score = 75.8 bits (38), Expect = 2e-10 Identities = 73/87 (83%) Strand = Plus / Minus Query: 408 tgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||| ||||||||||||| ||| |||||||||||||||||||||||| || |||| |||| Sbjct: 2739 tgtactatcaataggatccattataacaagtcacacactcatattcccgaaatacagaaa 2680 Query: 468 cnnnnnnnttccgcggtcgaactacca 494 | || |||||||||||||||| Sbjct: 2679 caaagaagtttcgcggtcgaactacca 2653 Score = 60.0 bits (30), Expect = 1e-05 Identities = 85/102 (83%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 599 tccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaataaa 658 |||||||||| ||| ||||||||||| |||||||| ||||| || |||| || |||| Sbjct: 2533 tccagtaaaagggacgaattataaatctctaaaataatagagagaaataccgcaaatagg 2474 Query: 659 gccattgcgacccccataaaagggagtagtcccccaacccgg 700 |||||||| | |||||| |||||| ||||| ||||| ||||| Sbjct: 2473 gccattgcaatccccatcaaaggg-gtagttccccaccccgg 2433 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaata 358 |||| |||| |||||||||||||||||||| Sbjct: 2823 tattccgtgctccagatactagaataaata 2794
>emb|X55900.1|OHPHSYII Oenothera elata subsp. hookeri plastid DNA for psbB, psbH and psbN genes for chlorophyll a-binding apoprotein, 10 kDa phosphoprotein, and unknown protein of photosystem II, respectively Length = 2894 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| |||| ||||| |||||||||||||||||| ||||| ||||||| ||||| | Sbjct: 2868 aaattccgtccaataaaacggaagaattataaatttccaaaataatagataagaataccg 2809 Query: 651 cgaataaagccattgc 666 | |||| ||||||||| Sbjct: 2808 caaatagagccattgc 2793
>emb|X55899.1|AOPHSYII Oenothera argillicola plastid DNA for psbB, psbH and psbN genes for chlorophyll a-binding apoprotein (CP47), 10kDa phosphoprotein, and unknown protein of photosystem II, respectively Length = 3365 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| |||| ||||| |||||||||||||||||| ||||| ||||||| ||||| | Sbjct: 3341 aaattccgtccaataaaacggaagaattataaatttccaaaataatagataagaataccg 3282 Query: 651 cgaataaagccattgc 666 | |||| ||||||||| Sbjct: 3281 caaatagagccattgc 3266
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| |||| ||||| |||||||||||||||||| ||||| ||||||| ||||| | Sbjct: 79653 aaattccgtccaataaaacggaagaattataaatttccaaaataatagataagaataccg 79594 Query: 651 cgaataaagccattgc 666 | |||| ||||||||| Sbjct: 79593 caaatagagccattgc 79578 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 408 tgtattatcaataggatcaattctaacaagtcacacactcatattccagagataccgaaa 467 |||| |||||||| |||| ||| |||||||||||||||||||||||| || |||| |||| Sbjct: 79836 tgtactatcaataagatccattataacaagtcacacactcatattccggaaatacagaaa 79777
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 83 tcaagctaaacaaaaggcaagggttcttcgaataagaacc 122 ||||| |||||||||||||| ||||||||||||||||||| Sbjct: 34995 tcaagataaacaaaaggcaaaggttcttcgaataagaacc 34956
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 596 ccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaat 655 ||||||| ||||| ||||||||||||||| || || || ||||||||||||| || ||| Sbjct: 54634 ccatccaataaaacggaagaattataaatctccaagataatagataggaatactgcaaat 54575 Query: 656 aaagccattgc 666 | ||||||||| Sbjct: 54574 agagccattgc 54564
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 596 ccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagcgaat 655 ||||||| ||||| ||||||||||||||| || || || ||||||||||||| || ||| Sbjct: 52715 ccatccaataaaacggaagaattataaatctccaagataatagataggaatactgcaaat 52656 Query: 656 aaagccattg 665 | |||||||| Sbjct: 52655 agagccattg 52646
>gb|DQ160103.1| Taraxacum officinale TO78-1rc (To78-1rc) mRNA, partial cds Length = 244 Score = 56.0 bits (28), Expect = 2e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 591 aaattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatag 650 ||||||| |||| ||||| || |||||||||||| || ||||| |||||||| |||| | Sbjct: 144 aaattccgtccaataaaacgggagaattataaatctccaaaataatagatagaaataccg 85 Query: 651 cgaataaagccattgc 666 | |||| ||||||||| Sbjct: 84 caaatagagccattgc 69
>gb|DQ069620.1| Ginkgo biloba photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast Length = 225 Score = 54.0 bits (27), Expect = 6e-04 Identities = 85/103 (82%), Gaps = 1/103 (0%) Strand = Plus / Minus Query: 592 aattccatccagtaaaatggaagaattataaatttctaaaatgatagataggaatatagc 651 ||||||||| | ||||| ||||||||||||||| || || ||||||| ||||| || Sbjct: 210 aattccatctaataaaacggaagaattataaatctccgggataatagataagaatactgc 151 Query: 652 gaataaagccattgcgacccccataaaagggagtagtccccca 694 |||| ||||||||| || ||||||||| |||||||| ||||| Sbjct: 150 aaatagagccattgcaacacccataaaa-ggagtagttcccca 109
>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence Length = 148306 Score = 52.0 bits (26), Expect = 0.003 Identities = 33/34 (97%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 667 gacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||| |||||||||||||||||| Sbjct: 104361 gacccccataaaagg-agtagtcccccaacccgg 104329
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.003 Identities = 33/34 (97%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 667 gacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||| |||||||||||||||||| Sbjct: 13971524 gacccccataaaagg-agtagtcccccaacccgg 13971492
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.003 Identities = 33/34 (97%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 667 gacccccataaaagggagtagtcccccaacccgg 700 ||||||||||||||| |||||||||||||||||| Sbjct: 14053526 gacccccataaaagg-agtagtcccccaacccgg 14053494
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22, complete sequence Length = 142854 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Minus Query: 510 tagagcttaaactagaaaggcttttttggatggaaaaact 549 ||||| ||| |||||||||||| ||||||||| ||||||| Sbjct: 138581 tagaggttacactagaaaggctcttttggatgaaaaaact 138542 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 604 taaaatggaagaattataaatttctaaaat 633 |||||| |||||||||||||| |||||||| Sbjct: 138492 taaaatagaagaattataaatgtctaaaat 138463
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Minus Query: 510 tagagcttaaactagaaaggcttttttggatggaaaaact 549 ||||| ||| |||||||||||| ||||||||| ||||||| Sbjct: 33779 tagaggttacactagaaaggctcttttggatgaaaaaact 33740 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 604 taaaatggaagaattataaatttctaaaat 633 |||||| |||||||||||||| |||||||| Sbjct: 33690 taaaatagaagaattataaatgtctaaaat 33661
>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0 Length = 200576 Score = 48.1 bits (24), Expect = 0.039 Identities = 42/48 (87%) Strand = Plus / Minus Query: 406 tatgtattatcaataggatcaattctaacaagtcacacactcatattc 453 |||||| |||| ||| | |||||||||||||||||| |||||| |||| Sbjct: 20583 tatgtactatctatatggtcaattctaacaagtcactcactcaaattc 20536
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 48.1 bits (24), Expect = 0.039 Identities = 42/48 (87%) Strand = Plus / Minus Query: 406 tatgtattatcaataggatcaattctaacaagtcacacactcatattc 453 |||||| |||| ||| | |||||||||||||||||| |||||| |||| Sbjct: 154798 tatgtactatctatatggtcaattctaacaagtcactcactcaaattc 154751
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Minus Query: 510 tagagcttaaactagaaaggcttttttggatggaaaaact 549 ||||| ||| |||||||||||| ||||||||| ||||||| Sbjct: 29255122 tagaggttacactagaaaggctcttttggatgaaaaaact 29255083 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 604 taaaatggaagaattataaatttctaaaat 633 |||||| |||||||||||||| |||||||| Sbjct: 29255033 taaaatagaagaattataaatgtctaaaat 29255004
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Plus Query: 186 gttgtcttttgggcaaacaaaattgtaaggaa 217 ||||||||||||||||||||| ||| |||||| Sbjct: 11060526 gttgtcttttgggcaaacaaatttgaaaggaa 11060557
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Plus Query: 186 gttgtcttttgggcaaacaaaattgtaaggaa 217 ||||||||||||||||||||| ||| |||||| Sbjct: 43220 gttgtcttttgggcaaacaaatttgaaaggaa 43251
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Plus Query: 257 tttttcagtctggttgcgaggtcttaatagtgagtatgaatcatagttcca 307 |||| |||| |||||| ||||||| || ||| | ||||||||||||||||| Sbjct: 4085500 ttttccagtttggttgagaggtctgaaaagttaatatgaatcatagttcca 4085550 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 aagctaaacaaaaggcaagggttct 109 |||||||| |||||||||||||||| Sbjct: 18455044 aagctaaagaaaaggcaagggttct 18455020
>gb|AC171141.2| Helobdella robusta clone CH306-1B3, complete sequence Length = 94001 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 127 gataatcatttattgaaattgaa 149 ||||||||||||||||||||||| Sbjct: 13990 gataatcatttattgaaattgaa 14012
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Plus Query: 257 tttttcagtctggttgcgaggtcttaatagtgagtatgaatcatagttcca 307 |||| |||| |||||| ||||||| || ||| | ||||||||||||||||| Sbjct: 78358 ttttccagtttggttgagaggtctgaaaagttaatatgaatcatagttcca 78408
>gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, complete sequence Length = 205550 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 612 aagaattataaatttctaaaatgata 637 ||||| |||||||||||||||||||| Sbjct: 152791 aagaaatataaatttctaaaatgata 152766
>gb|AC129604.3| Mus musculus BAC clone RP23-110O3 from 7, complete sequence Length = 189634 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 612 aagaattataaatttctaaaatgata 637 ||||| |||||||||||||||||||| Sbjct: 162272 aagaaatataaatttctaaaatgata 162297
>gb|AC124198.2| Mus musculus BAC clone RP23-306E4 from 8, complete sequence Length = 172546 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 ctcaagctaaacaaaaggcaag 103 |||||||||||||||||||||| Sbjct: 112130 ctcaagctaaacaaaaggcaag 112109
>emb|CR698376.2|CNS0G1TG Tetraodon nigroviridis full-length cDNA Length = 1443 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 529 gcttttttggatggaaaaactc 550 |||||||||||||||||||||| Sbjct: 665 gcttttttggatggaaaaactc 644
>emb|CR688862.2|CNS0FUH6 Tetraodon nigroviridis full-length cDNA Length = 1445 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 529 gcttttttggatggaaaaactc 550 |||||||||||||||||||||| Sbjct: 695 gcttttttggatggaaaaactc 674
>gb|AC124152.1| Populus deltoides, complete sequence Length = 2373 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 329 tatttcgtgttccagatactagaataaata 358 |||| |||| |||||||||||||||||||| Sbjct: 102 tattccgtgctccagatactagaataaata 73
>gb|AC092274.2| Homo sapiens chromosome 5 clone CTC-537D8, complete sequence Length = 148579 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 547 actctgacttcctagttttaggttag 572 |||||||||||||| ||||||||||| Sbjct: 25059 actctgacttcctatttttaggttag 25034
>gb|AF369754.1|AF369754 Populus deltoides clone AK56U, chloroplast sequence Length = 538 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 329 tatttcgtgttccagatactagaataaata 358 |||| |||| |||||||||||||||||||| Sbjct: 449 tattccgtgctccagatactagaataaata 478
>gb|AC166646.4| Mus musculus chromosome 3, clone RP24-400P18, complete sequence Length = 176864 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 613 agaattataaatttctaaaat 633 ||||||||||||||||||||| Sbjct: 74446 agaattataaatttctaaaat 74466
>gb|AC162872.9| Mus musculus chromosome 3, clone RP24-346J6, complete sequence Length = 147221 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 613 agaattataaatttctaaaat 633 ||||||||||||||||||||| Sbjct: 123691 agaattataaatttctaaaat 123671
>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence Length = 116591 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 616 attataaatttctaaaatgat 636 ||||||||||||||||||||| Sbjct: 66261 attataaatttctaaaatgat 66241
>emb|Z95400.2|HS393P23 Human DNA sequence from clone RP3-393P23 on chromosome Xq21.1-21.33 Contains the 5' end of the KLHL4 gene for kelch-like 4 (Drosophila), complete sequence Length = 133120 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tttcgtgttccagatactaga 351 ||||||||||||||||||||| Sbjct: 120751 tttcgtgttccagatactaga 120731
>emb|AL353688.7| Human DNA sequence from clone RP11-275O3 on chromosome 13, complete sequence Length = 92569 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 627 ctaaaatgatagataggaata 647 ||||||||||||||||||||| Sbjct: 29734 ctaaaatgatagataggaata 29714
>gb|AC084324.8| Mus musculus Strain C57BL6/J chromosome 2 BAC, RP23-96L7 Complete Sequence, complete sequence Length = 205893 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 agtctcaagctaaacaaaagg 99 ||||||||||||||||||||| Sbjct: 93366 agtctcaagctaaacaaaagg 93346
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 605 aaaatggaagaattataaatttctaaaat 633 ||||||||||||||| ||||| ||||||| Sbjct: 2260504 aaaatggaagaattaaaaattcctaaaat 2260532
>gb|AC063956.7|AC063956 Homo sapiens 4 BAC RP11-529K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141568 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 aaaattgtaaggaagaaaatt 224 ||||||||||||||||||||| Sbjct: 107218 aaaattgtaaggaagaaaatt 107198
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_B11 Length = 102824 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 aagctaaacaaaaggcaagggttct 109 |||||||| |||||||||||||||| Sbjct: 46892 aagctaaagaaaaggcaagggttct 46868
>dbj|AB111780.1| Elaeocarpus sylvestris chloroplast petB gene, intron 1, partial sequence, isolate: 27 Length = 301 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 273 cgaggtcttaatagtgagtatgaatcatagttc 305 |||||||| |||| | ||||||||||||||||| Sbjct: 89 cgaggtctgaatattaagtatgaatcatagttc 57
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 605 aaaatggaagaattataaatttctaaaat 633 ||||||||||||||| ||||| ||||||| Sbjct: 2021462 aaaatggaagaattaaaaattcctaaaat 2021434
>emb|AL928623.5| Mouse DNA sequence from clone RP23-276I21 on chromosome 2, complete sequence Length = 184480 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 agtctcaagctaaacaaaagg 99 ||||||||||||||||||||| Sbjct: 112499 agtctcaagctaaacaaaagg 112519
>gb|AC153977.4| Mus musculus 10 BAC RP24-270K22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163035 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 atatagaaattatcttgttg 24 |||||||||||||||||||| Sbjct: 15574 atatagaaattatcttgttg 15593
>gb|AY250188.1| Ceratina boninensis cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 617 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 tatgtattatcaataggatcaatt 429 |||||||||||||||||| ||||| Sbjct: 229 tatgtattatcaataggagcaatt 252
>gb|AC122491.3| Mus musculus BAC clone RP24-390D3 from chromosome 3, complete sequence Length = 175092 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 ttaaaattccatccagtaaa 607 |||||||||||||||||||| Sbjct: 37190 ttaaaattccatccagtaaa 37171
>gb|AC163021.5| Mus musculus chromosome 15, clone RP23-228E13, complete sequence Length = 215165 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 caaaattgtaaggaagaaaa 222 |||||||||||||||||||| Sbjct: 177374 caaaattgtaaggaagaaaa 177355
>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185202 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atatagaaattatcttgttg 24 |||||||||||||||||||| Sbjct: 11345 atatagaaattatcttgttg 11326
>gb|AC002990.1|HUAC002990 Human Chromosome 16 BAC clone CIT987SK-A-1000D7, complete sequence Length = 106760 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ttttgggcaaacaaaattgt 211 |||||||||||||||||||| Sbjct: 11236 ttttgggcaaacaaaattgt 11255
>emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in linkage group 5, complete sequence Length = 205281 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 aatttctaaaatgatagata 641 |||||||||||||||||||| Sbjct: 174056 aatttctaaaatgatagata 174075
>emb|CR689935.1|CNS0FVAZ Tetraodon nigroviridis full-length cDNA Length = 1433 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 ttttttggatggaaaaactc 550 |||||||||||||||||||| Sbjct: 668 ttttttggatggaaaaactc 649
>ref|XM_737618.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000305.00.0) partial mRNA Length = 1632 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 catttattgaaattgaatca 152 |||||||||||||||||||| Sbjct: 478 catttattgaaattgaatca 459
>gb|AC133899.9| Mus musculus chromosome 15, clone RP24-511H11, complete sequence Length = 185808 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 caaaattgtaaggaagaaaa 222 |||||||||||||||||||| Sbjct: 165 caaaattgtaaggaagaaaa 184
>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence Length = 112733 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 taaaatggaagaattataaa 623 |||||||||||||||||||| Sbjct: 51424 taaaatggaagaattataaa 51443
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence Length = 161536 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 aaaattgtaaggaagaaaat 223 |||||||||||||||||||| Sbjct: 98146 aaaattgtaaggaagaaaat 98127
>gb|AC137554.15| Medicago truncatula clone mth2-17j18, complete sequence Length = 121248 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 taaaatggaagaattataaa 623 |||||||||||||||||||| Sbjct: 118655 taaaatggaagaattataaa 118636
>gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence Length = 231286 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 ccataatatctagaaatgta 511 |||||||||||||||||||| Sbjct: 203184 ccataatatctagaaatgta 203203
>emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chromosome 1 Contains the 5' end of the SLICK gene for a sodium- and chloride-activated ATP-sensitive potassium channel, complete sequence Length = 185560 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcttaatagtgagtatgaat 297 |||||||||||||||||||| Sbjct: 792 tcttaatagtgagtatgaat 773
>emb|AL603753.3| Human DNA sequence from clone RP13-11B7 on chromosome Xp11.4-21.2 Contains the 3' end of a novel gene (FLJ36601), complete sequence Length = 138166 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aaattgaatcagtgtaatga 161 |||||||||||||||||||| Sbjct: 134986 aaattgaatcagtgtaatga 135005
>emb|AL358853.22| Human DNA sequence from clone RP11-27F3 on chromosome 1 Contains part of the SLICK gene for a sodium- and chloride-activated ATP-sensitive potassium channel, complete sequence Length = 60049 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tcttaatagtgagtatgaat 297 |||||||||||||||||||| Sbjct: 58841 tcttaatagtgagtatgaat 58822
>emb|AL160291.31| Human DNA sequence from clone RP11-85G18 on chromosome 10 Contains the 5' end of the YME1L1 gene for YME1-like 1 (S. cerevisiae), the gene for a novel protein kinase domain containing protein (FLJ14813), the gene for endozepine-related protein precursor (DKFZp434A2417) (FLJ32907 KIAA1996), a novel pseudogene (KIAA0563, FLJ34306), the 5' end of a novel pseudogene (FLJ10376) and six CpG islands, complete sequence Length = 155962 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttgaatttttcagtctggtt 271 |||||||||||||||||||| Sbjct: 81389 ttgaatttttcagtctggtt 81370
>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the 5' end of a novel gene, complete sequence Length = 165257 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cctttctatgtattatcaat 419 |||||||||||||||||||| Sbjct: 30424 cctttctatgtattatcaat 30405
>emb|AL121900.26|HSBA379J5 Human DNA sequence from clone RP11-379J5 on chromosome 20 Contains the 3' end of the SEC23B gene for Sec23 (S. cerevisiae) homolog B, two novel genes, the 5' end of the HARS2 gene for histidyl-tRNA synthetase 2, a pseudogene similar to part of homeobox proteins and two CpG islands, complete sequence Length = 149933 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ctcaagctaaacaaaaggcaaggg 105 ||||||||||| |||||||||||| Sbjct: 142925 ctcaagctaaagaaaaggcaaggg 142902
>emb|AJ583281.1| Odontocarus cephalotes mitochondrial partial COI gene for cytochrome oxidase subunit I Length = 759 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 tatgtattatcaataggatcaatt 429 |||||||||||||||||| ||||| Sbjct: 391 tatgtattatcaataggagcaatt 414
>gb|AC159546.4| Mus musculus 6 BAC RP23-450B23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192227 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 attgtaaggaagaaaatttc 226 |||||||||||||||||||| Sbjct: 55472 attgtaaggaagaaaatttc 55491
>gb|AC090284.6| Homo sapiens chromosome 11, clone RP11-348B14, complete sequence Length = 160146 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 atactagaataaataatatc 363 |||||||||||||||||||| Sbjct: 100552 atactagaataaataatatc 100571
>emb|BX470158.9| Zebrafish DNA sequence from clone CH211-113P5 in linkage group 8, complete sequence Length = 119483 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ttgatagagataacaggccc 401 |||||||||||||||||||| Sbjct: 7101 ttgatagagataacaggccc 7082
>gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosome 7, complete sequence Length = 204095 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 ccataatatctagaaatgta 511 |||||||||||||||||||| Sbjct: 54682 ccataatatctagaaatgta 54701
>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete sequence Length = 216348 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ttttgggcaaacaaaattgt 211 |||||||||||||||||||| Sbjct: 52758 ttttgggcaaacaaaattgt 52739
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 650 gcgaataaagccattgcgacccccataa 677 |||||| ||||||||||||| ||||||| Sbjct: 12036 gcgaatgaagccattgcgacacccataa 12063
>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence Length = 171048 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ttttgggcaaacaaaattgt 211 |||||||||||||||||||| Sbjct: 19683 ttttgggcaaacaaaattgt 19664
>gb|AC092641.2| Homo sapiens BAC clone RP11-389F18 from 2, complete sequence Length = 219175 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 606 aaatggaagaattataaatttcta 629 ||||||||||||| |||||||||| Sbjct: 53849 aaatggaagaattgtaaatttcta 53826
>gb|AC007281.3| Homo sapiens BAC clone RP11-457F14 from 2, complete sequence Length = 179343 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 taaatttctaaaatgataga 639 |||||||||||||||||||| Sbjct: 110166 taaatttctaaaatgataga 110185
>gb|AY181188.1| Bombus rupestris strain Denmark cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1056 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 tatgtattatcaataggatcaatt 429 |||||||||||||||||| ||||| Sbjct: 901 tatgtattatcaataggagcaatt 924
>gb|AY181187.1| Bombus rupestris strain Switzerland cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1056 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 tatgtattatcaataggatcaatt 429 |||||||||||||||||| ||||| Sbjct: 901 tatgtattatcaataggagcaatt 924
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tttgggcaaacaaaattgta 212 |||||||||||||||||||| Sbjct: 121569 tttgggcaaacaaaattgta 121588
>gb|AC153371.7| Mus musculus 6 BAC RP23-304H3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206412 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 attgtaaggaagaaaatttc 226 |||||||||||||||||||| Sbjct: 141918 attgtaaggaagaaaatttc 141937
>emb|AL845168.5| Zebrafish DNA sequence from clone DKEY-91M11, complete sequence Length = 198627 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ttgatagagataacaggccc 401 |||||||||||||||||||| Sbjct: 43352 ttgatagagataacaggccc 43333
>emb|AJ429729.1|BGR429729 Boopis graminea chloroplast atpE gene (partial), tRNA-Val gene (partial) and tRNA-Met gene Length = 1485 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ttatcaataggatcaattct 431 |||||||||||||||||||| Sbjct: 530 ttatcaataggatcaattct 549
>dbj|AP003784.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-654C20, complete sequence Length = 153539 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atactagaataaataatatc 363 |||||||||||||||||||| Sbjct: 127594 atactagaataaataatatc 127575 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,022,118 Number of Sequences: 3902068 Number of extensions: 7022118 Number of successful extensions: 144435 Number of sequences better than 10.0: 176 Number of HSP's better than 10.0 without gapping: 181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142149 Number of HSP's gapped (non-prelim): 1978 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
