ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3k14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTPA_RABIT (Q28717) Serine/threonine-protein phosphatase 2A regu... 30 6.9

>PTPA_RABIT (Q28717) Serine/threonine-protein phosphatase 2A regulatory subunit|
           B' (PP2A, subunit B', PR53 isoform) (Phosphotyrosyl
           phosphatase activator) (PTPA)
          Length = 323

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
 Frame = -1

Query: 337 KWMREGPPLGDKHGRFRRR----------------LGALVHCFTEAALPIVDT*LHHLVG 206
           +W+ E PP+ D+  RF  +                + A+V     AA+P V   L   VG
Sbjct: 86  RWIDETPPV-DQPSRFGNKAYRTWYAKLDEEAEGLVAAVVPAHLAAAVPEVAVYLKESVG 144

Query: 205 QQVRIWQKTAHVVSYS*IVSLLQRCQKLQTEDSLVGLLELFS 80
              RI   T H  +++  +  L +   L+ +D +  + ++F+
Sbjct: 145 NSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFN 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,126,381
Number of Sequences: 219361
Number of extensions: 2172461
Number of successful extensions: 5939
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5925
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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