Clone Name | rbasd3k14 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 95.6 bits (48), Expect = 2e-16 Identities = 115/136 (84%), Gaps = 6/136 (4%) Strand = Plus / Plus Query: 355 ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 414 |||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||| Sbjct: 22519005 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 22519064 Query: 415 gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 474 ||||||| | | | ||||||||| ||| |||||||||||||||| | |||| ||| Sbjct: 22519065 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 22519118 Query: 475 tgaccccatttgctgg 490 | ||||||||||||| Sbjct: 22519119 cggccccatttgctgg 22519134 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 611 atttggccagctatgtgaaggcaagcttccatt 643 ||||| |||||| ||||||||||||| |||||| Sbjct: 22519490 atttgtccagctttgtgaaggcaagcctccatt 22519522 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ttcagctgtaggaaacaacat 174 ||||||||||||||||||||| Sbjct: 22518800 ttcagctgtaggaaacaacat 22518820
>dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1720_F04 Length = 105227 Score = 95.6 bits (48), Expect = 2e-16 Identities = 115/136 (84%), Gaps = 6/136 (4%) Strand = Plus / Plus Query: 355 ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 414 |||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||| Sbjct: 62493 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 62552 Query: 415 gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 474 ||||||| | | | ||||||||| ||| |||||||||||||||| | |||| ||| Sbjct: 62553 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 62606 Query: 475 tgaccccatttgctgg 490 | ||||||||||||| Sbjct: 62607 cggccccatttgctgg 62622 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 611 atttggccagctatgtgaaggcaagcttccatt 643 ||||| |||||| ||||||||||||| |||||| Sbjct: 62978 atttgtccagctttgtgaaggcaagcctccatt 63010 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ttcagctgtaggaaacaacat 174 ||||||||||||||||||||| Sbjct: 62288 ttcagctgtaggaaacaacat 62308
>dbj|AK068892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G22, full insert sequence Length = 2157 Score = 95.6 bits (48), Expect = 2e-16 Identities = 115/136 (84%), Gaps = 6/136 (4%) Strand = Plus / Minus Query: 355 ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 414 |||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||| Sbjct: 1708 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1649 Query: 415 gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 474 ||||||| | | | ||||||||| ||| |||||||||||||||| | |||| ||| Sbjct: 1648 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 1595 Query: 475 tgaccccatttgctgg 490 | ||||||||||||| Sbjct: 1594 cggccccatttgctgg 1579 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 526 agaagtcctgattgttgttcccagccttggcgacaccattctgtggtgct 575 |||| ||||||||||||||| || |||||| | |||||||||||| |||| Sbjct: 1522 agaattcctgattgttgttcgcaaccttggtggcaccattctgtgctgct 1473 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ttcagctgtaggaaacaacat 174 ||||||||||||||||||||| Sbjct: 1913 ttcagctgtaggaaacaacat 1893
>dbj|AK067125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J09, full insert sequence Length = 1741 Score = 95.6 bits (48), Expect = 2e-16 Identities = 115/136 (84%), Gaps = 6/136 (4%) Strand = Plus / Minus Query: 355 ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 414 |||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||| Sbjct: 1474 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1415 Query: 415 gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 474 ||||||| | | | ||||||||| ||| |||||||||||||||| | |||| ||| Sbjct: 1414 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 1361 Query: 475 tgaccccatttgctgg 490 | ||||||||||||| Sbjct: 1360 cggccccatttgctgg 1345 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 526 agaagtcctgattgttgttcccagccttggcgacaccattctgtggtgct 575 |||| ||||||||||||||| || |||||| | |||||||||||| |||| Sbjct: 1288 agaattcctgattgttgttcgcaaccttggtggcaccattctgtgctgct 1239 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ttcagctgtaggaaacaacat 174 ||||||||||||||||||||| Sbjct: 1679 ttcagctgtaggaaacaacat 1659 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 611 atttggccagctatgtgaaggcaagcttccatt 643 ||||| |||||| ||||||||||||| |||||| Sbjct: 1206 atttgtccagctttgtgaaggcaagcctccatt 1174
>dbj|AK059690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B02, full insert sequence Length = 1540 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 355 ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 414 |||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||| Sbjct: 1114 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1055 Query: 415 gagaggg 421 ||||||| Sbjct: 1054 gagaggg 1048 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 526 agaagtcctgattgttgttcccagccttggcgacaccattctgtggtgct 575 |||| ||||||||||||||| || |||||| | |||||||||||| |||| Sbjct: 928 agaattcctgattgttgttcgcaaccttggtggcaccattctgtgctgct 879 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ttcagctgtaggaaacaacat 174 ||||||||||||||||||||| Sbjct: 1319 ttcagctgtaggaaacaacat 1299 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 611 atttggccagctatgtgaaggcaagcttccatt 643 ||||| |||||| ||||||||||||| |||||| Sbjct: 846 atttgtccagctttgtgaaggcaagcctccatt 814
>gb|BT016701.1| Zea mays clone Contig534 mRNA sequence Length = 1500 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 504 ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 563 |||||||| ||| | |||||| ||||||||||||||||||| || |||||| | ||||| Sbjct: 1030 ccaaaaccgaaggtaccagaagagaagtcctgattgttgttagcaaccttggtggcacca 971 Query: 564 ttctgtggtgctgctg 579 ||||||| |||||||| Sbjct: 970 ttctgtgctgctgctg 955 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Minus Query: 374 tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 421 |||||||||||| || |||||||| || |||||||| ||||| ||||| Sbjct: 1181 tccttgagttaaggacgaaaaatcatagtctttgccagattgtgaggg 1134
>gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, complete sequence Length = 2173 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 504 ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 563 |||||||||||| | |||||| | ||||||||||||||||| || |||||| | ||||| Sbjct: 1542 ccaaaaccaaaggtaccagaagaaaagtcctgattgttgtttgcaaccttggtggcacca 1483 Query: 564 ttctgtggtgctgctg 579 ||||||| |||||||| Sbjct: 1482 ttctgtgctgctgctg 1467 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 374 tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 421 |||||||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1693 tccttgagttaacgaggaaaaatcgtaatctttgccagattgtgaggg 1646
>gb|AY105375.1| Zea mays PCO146209 mRNA sequence Length = 2189 Score = 71.9 bits (36), Expect = 3e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 504 ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 563 |||||||| ||| | |||||| ||||||||||||||||||| || |||||| | ||||| Sbjct: 1536 ccaaaaccgaaggtaccagaagagaagtcctgattgttgttagcaaccttggtggcacca 1477 Query: 564 ttctgtggtgctgctg 579 ||||||| |||||||| Sbjct: 1476 ttctgtgctgctgctg 1461 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Minus Query: 374 tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 421 |||||||||||| || |||||||| || |||||||| ||||| ||||| Sbjct: 1687 tccttgagttaaggacgaaaaatcatagtctttgccagattgtgaggg 1640
>gb|BT017025.1| Zea mays clone EK07D2312F09.c mRNA sequence Length = 965 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 356 tcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgattg 415 ||||||||| | ||| | |||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 724 tcatcgcttggtgaaaaatccttgagttaacgaggaaaaatcgtaatctttgccagattg 665 Query: 416 agaggg 421 ||||| Sbjct: 664 tgaggg 659 Score = 61.9 bits (31), Expect = 3e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 504 ccaaaaccaaagtttccagaaaagaagtcctgattgttgttcccagccttggcgacacca 563 |||||||||||| | |||||| ||| ||| |||||||||||| | |||||| | ||||| Sbjct: 555 ccaaaaccaaaggtaccagaagagaggtcttgattgttgttcgaaaccttggtggcacca 496 Query: 564 ttctgtggtgctgct 578 ||||||| ||||||| Sbjct: 495 ttctgtgctgctgct 481
>gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, complete sequence Length = 144135 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 505 caaaaccaaagtttccagaaaagaag 530 ||||||||| |||||||||||||||| Sbjct: 133629 caaaaccaaggtttccagaaaagaag 133604
>emb|AM049026.1| Curculio glandium mRNA for ribosomal protein L11e (rpL11e gene) Length = 573 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 accaaaaccaaagtttccaga 523 ||||||||||||||||||||| Sbjct: 357 accaaaaccaaagtttccaga 337
>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete sequence Length = 205757 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 acacaacagaataaaattatt 25 ||||||||||||||||||||| Sbjct: 105652 acacaacagaataaaattatt 105672
>dbj|AK067240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096N21, full insert sequence Length = 1451 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 611 atttggccagctatgtgaaggcaagcttccatt 643 ||||| |||||| ||||||||||||| |||||| Sbjct: 1441 atttgtccagctttgtgaaggcaagcctccatt 1409
>emb|AL732564.12| Mouse DNA sequence from clone RP23-442G9 on chromosome 2, complete sequence Length = 211657 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 507 aaaccaaagtttccagaaaag 527 ||||||||||||||||||||| Sbjct: 107172 aaaccaaagtttccagaaaag 107152
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tgggcgaaccaaaaccaaag 515 |||||||||||||||||||| Sbjct: 793461 tgggcgaaccaaaaccaaag 793442
>gb|AC117949.5| Mus musculus BAC clone RP23-197M6 from chromosome 18, complete sequence Length = 196445 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 aaaccaaagtttccagaaaa 526 |||||||||||||||||||| Sbjct: 180985 aaaccaaagtttccagaaaa 180966
>ref|XM_540611.2| PREDICTED: Canis familiaris similar to solute carrier family 43, member 1 (LOC483493), mRNA Length = 2200 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gggcatggtagtagaagaggtagg 442 ||||| |||||||||||||||||| Sbjct: 1843 gggcacggtagtagaagaggtagg 1820
>gb|BC056074.1| Xenopus laevis dimethylarginine dimethylaminohydrolase 1, mRNA (cDNA clone MGC:69055 IMAGE:4965611), complete cds Length = 1344 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 taggaaacaacatgagcagt 181 |||||||||||||||||||| Sbjct: 209 taggaaacaacatgagcagt 228
>gb|AC117615.11| Mus musculus chromosome 19, clone RP23-110D20, complete sequence Length = 191809 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 aaaccaaagtttccagaaaa 526 |||||||||||||||||||| Sbjct: 180483 aaaccaaagtttccagaaaa 180502
>gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, complete sequence Length = 248718 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 aaaccaaagtttccagaaaa 526 |||||||||||||||||||| Sbjct: 172830 aaaccaaagtttccagaaaa 172811
>gb|AC162940.4| Mus musculus BAC clone RP23-95D3 from chromosome 13, complete sequence Length = 218228 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 gaaccaaaaccaaagtttccagaa 524 ||||||||||||||| |||||||| Sbjct: 62274 gaaccaaaaccaaagattccagaa 62297
>emb|AL591896.6| Human DNA sequence from clone RP11-422P22 on chromosome 1 Contains a gene for a novel protein containing Kelch motif and a putative novel gene, complete sequence Length = 117320 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gaaccaaaaccaaagtttcc 520 |||||||||||||||||||| Sbjct: 68531 gaaccaaaaccaaagtttcc 68512
>emb|AL442643.2| Human DNA sequence from clone RP11-564H19 on chromosome 13, complete sequence Length = 167477 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ccaaagtttccagaaaagaa 529 |||||||||||||||||||| Sbjct: 86180 ccaaagtttccagaaaagaa 86161
>gb|AC022389.9| Homo sapiens chromosome 10 clone RP11-124L5, complete sequence Length = 198481 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 ccagctatgtgaaggcaagc 636 |||||||||||||||||||| Sbjct: 71075 ccagctatgtgaaggcaagc 71056
>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21, complete sequence Length = 171606 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tgcttatcgcccaatggagg 319 |||||||||||||||||||| Sbjct: 64629 tgcttatcgcccaatggagg 64648
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atacaaagtaatggatatat 53 |||||||||||||||||||| Sbjct: 26867730 atacaaagtaatggatatat 26867749 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 662 tagtatttagcacactggca 681 |||||||||||||||||||| Sbjct: 23631292 tagtatttagcacactggca 23631311
>gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610G5 map 15q15, complete sequence Length = 142121 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tatccacaattggcaaagctgcct 252 |||| ||||||||||||||||||| Sbjct: 23466 tatctacaattggcaaagctgcct 23489
>gb|AC125421.9| Homo sapiens chromosome 17, clone CTD-2532D12, complete sequence Length = 111128 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ggaacacaacagaataaaattatt 25 |||||| ||||||||||||||||| Sbjct: 90943 ggaacataacagaataaaattatt 90920
>gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K2 map 15q15, complete sequence Length = 173660 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tatccacaattggcaaagctgcct 252 |||| ||||||||||||||||||| Sbjct: 145801 tatctacaattggcaaagctgcct 145824
>gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, complete sequence Length = 169483 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 ggaacacaacagaataaaattatt 25 |||||| ||||||||||||||||| Sbjct: 11226 ggaacataacagaataaaattatt 11203
>gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) genomic sequence Length = 41352 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 caccctgaacaagagaaaaaagtt 90 ||||||||| |||||||||||||| Sbjct: 35733 caccctgaaaaagagaaaaaagtt 35710
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1001_D02 Length = 129081 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atacaaagtaatggatatat 53 |||||||||||||||||||| Sbjct: 46273 atacaaagtaatggatatat 46292
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516F12 Length = 146364 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atacaaagtaatggatatat 53 |||||||||||||||||||| Sbjct: 133783 atacaaagtaatggatatat 133802
>emb|BX255933.7| Zebrafish DNA sequence from clone DKEY-38L7 in linkage group 6, complete sequence Length = 231623 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 tggaacacaacagaataaaattat 24 ||||||| |||||||||||||||| Sbjct: 72901 tggaacaaaacagaataaaattat 72924
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 662 tagtatttagcacactggca 681 |||||||||||||||||||| Sbjct: 72392 tagtatttagcacactggca 72411
>gb|AC131117.4| Mus musculus BAC clone RP24-351I18 from 13, complete sequence Length = 193056 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 gaaccaaaaccaaagtttccagaa 524 ||||||||||||||| |||||||| Sbjct: 166273 gaaccaaaaccaaagattccagaa 166296
>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence Length = 210193 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 aaaccaaagtttccagaaaa 526 |||||||||||||||||||| Sbjct: 164776 aaaccaaagtttccagaaaa 164795
>emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chromosome 17, complete sequence Length = 50643 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 gttagaacttgcagttgtga 477 |||||||||||||||||||| Sbjct: 5467 gttagaacttgcagttgtga 5486
>gb|U34359.1|MMGM2AP4 Mus musculus GM2 activator protein (Gm2a) gene, exon 4 and complete cds Length = 726 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 cattctgtggtgctgctgcc 581 |||||||||||||||||||| Sbjct: 231 cattctgtggtgctgctgcc 212
>gb|L19526.1|MUSGM2ACT Mouse GM2 activator protein mRNA, complete cds Length = 1113 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 cattctgtggtgctgctgcc 581 |||||||||||||||||||| Sbjct: 618 cattctgtggtgctgctgcc 599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,670,381 Number of Sequences: 3902068 Number of extensions: 6670381 Number of successful extensions: 120780 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120579 Number of HSP's gapped (non-prelim): 201 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)