ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-... 32 1.4
2CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator... 32 1.8
3SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II) 31 3.1
4SYN2_RAT (Q63537) Synapsin-2 (Synapsin II) 30 6.9
5DXS_BRUSU (Q8G292) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2... 30 9.1
6DXS_BRUME (Q8YFM2) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2... 30 9.1
7SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II) 30 9.1
8CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48) 30 9.1
9FER_SULAC (P00219) Zinc-containing ferredoxin 30 9.1

>ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein|
           ESPL1) (Extra spindle poles-like 1 protein)
          Length = 2118

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = -2

Query: 688 ELFVAEFVLVLPLHPP-NARRACKILPGRGCSQGRPVALLQSGFRLEACL--PSGESISA 518
           EL    ++L  P  PP    R   IL   G +QG P  +L+    L ACL   SGE+   
Sbjct: 79  ELACDGYLLSTPQRPPLYLERILFILLRNGSTQGSPDTVLRLAQPLHACLVQNSGEAAPQ 138

Query: 517 DHSGACCVERGI*G*GCSWQLWRLGSATSLRAAMQFSTR 401
           D+     V RG      S+ L+  G+   L     FSTR
Sbjct: 139 DYE---AVTRG------SFSLFWKGAEALLERRAAFSTR 168



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>CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator protein 1|
          Length = 1157

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
 Frame = +3

Query: 219 RREMVAGVLGQRKHETFAVVLYTPVRFIQLLGEKEEV------IYMRGRYVPPWPF---- 368
           ++ +  GV+  + HETF  V      F QL   K +       + +   Y P  PF    
Sbjct: 151 KQRVFTGVV-TKLHETFGFV--DEDVFFQLTAVKGKSPQAGDRVLVEATYNPNMPFKWNA 207

Query: 369 -----LSISGPGVLRDLVENCIAALKDVAEPSRQSCQLQPQPHIPRSTQQAPE*SAEMLS 533
                L    P   + L++N  A ++ VA+P+  + Q QP P     T    + SA  L+
Sbjct: 208 QRIQTLPNQNPASAQSLIKNPAAVMQPVAQPTAYAVQTQPPPQ--AQTLLQAQISAATLT 265

Query: 534 PL 539
           PL
Sbjct: 266 PL 267



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>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)|
          Length = 586

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +3

Query: 477 PHIPRSTQQAPE*SAEMLSPLGRQASRRKPDWRSATGRPWLQPLPGKILQARRALGGCRG 656
           P  P +TQQ    S  +  P   +   ++P  +   G+P     PGK+L  RR   G   
Sbjct: 427 PQRPLTTQQPQ--SGTLKEPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPSGPSL 484

Query: 657 RTSTNSATNSS 689
            +S++S+++SS
Sbjct: 485 PSSSSSSSSSS 495



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>SYN2_RAT (Q63537) Synapsin-2 (Synapsin II)|
          Length = 586

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 477 PHIPRSTQQAPE*SAEMLSPLGRQASRRKPDWRSATGRPWLQPLPGKILQARRALGGCRG 656
           P  P +TQQ    S  +  P   +   ++P  +   G+P     PGK+L  RR   G   
Sbjct: 427 PQRPLTTQQPQ--SGTLKEPDSSKTPPQRPAPQGGPGQPQGMQPPGKVLPPRRLPSGPSL 484

Query: 657 RTSTNSATNSS 689
             S++S+++SS
Sbjct: 485 PPSSSSSSSSS 495



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>DXS_BRUSU (Q8G292) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 643

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 643 PNARRACKILPGRGCSQGRPVALLQSGFRLEACLPSGESISA 518
           P      +I  GR   +G  VALL  G RL+ CL + E + A
Sbjct: 487 PERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGA 528



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>DXS_BRUME (Q8YFM2) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 643

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 643 PNARRACKILPGRGCSQGRPVALLQSGFRLEACLPSGESISA 518
           P      +I  GR   +G  VALL  G RL+ CL + E + A
Sbjct: 487 PERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGA 528



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>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)|
          Length = 582

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +3

Query: 477 PHIPRSTQQAPE*SAEMLSPLGRQASRRKPDWRSATGRPWLQPLPGKILQARRALGGCRG 656
           P  P +TQQ    S  +  P   +   ++P  +   G+P     PGK+L  RR   G   
Sbjct: 426 PQRPLTTQQPQ--SGTLKDPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPPGPSL 483

Query: 657 RTSTNSATNSS 689
             S++S+++SS
Sbjct: 484 PPSSSSSSSSS 494



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>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 659  SAPAPTQC---SSSLQDFTGQRLQPGATSRTSPVWLSPGGLPA 540
            S P+PT     + + Q  T Q  QP A  + SPV +SP G P+
Sbjct: 1881 SLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPS 1923



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>FER_SULAC (P00219) Zinc-containing ferredoxin|
          Length = 103

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 319 FSPKSWINLTGVYSTTANVSCFLCPSTPATISLLPLNSMTWMRPPGLP 176
           + P     + GV+ T   V   LC +  + I+  P+N   W   PG P
Sbjct: 22  YGPVESPKVLGVHGTIVGVDFDLCIADGSCITACPVNVFQWYETPGHP 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,221,852
Number of Sequences: 219361
Number of extensions: 2553384
Number of successful extensions: 7948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7945
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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