Clone Name | rbasd3k02 |
---|---|
Clone Library Name | barley_pub |
>ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein| ESPL1) (Extra spindle poles-like 1 protein) Length = 2118 Score = 32.3 bits (72), Expect = 1.4 Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Frame = -2 Query: 688 ELFVAEFVLVLPLHPP-NARRACKILPGRGCSQGRPVALLQSGFRLEACL--PSGESISA 518 EL ++L P PP R IL G +QG P +L+ L ACL SGE+ Sbjct: 79 ELACDGYLLSTPQRPPLYLERILFILLRNGSTQGSPDTVLRLAQPLHACLVQNSGEAAPQ 138 Query: 517 DHSGACCVERGI*G*GCSWQLWRLGSATSLRAAMQFSTR 401 D+ V RG S+ L+ G+ L FSTR Sbjct: 139 DYE---AVTRG------SFSLFWKGAEALLERRAAFSTR 168
>CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator protein 1| Length = 1157 Score = 32.0 bits (71), Expect = 1.8 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%) Frame = +3 Query: 219 RREMVAGVLGQRKHETFAVVLYTPVRFIQLLGEKEEV------IYMRGRYVPPWPF---- 368 ++ + GV+ + HETF V F QL K + + + Y P PF Sbjct: 151 KQRVFTGVV-TKLHETFGFV--DEDVFFQLTAVKGKSPQAGDRVLVEATYNPNMPFKWNA 207 Query: 369 -----LSISGPGVLRDLVENCIAALKDVAEPSRQSCQLQPQPHIPRSTQQAPE*SAEMLS 533 L P + L++N A ++ VA+P+ + Q QP P T + SA L+ Sbjct: 208 QRIQTLPNQNPASAQSLIKNPAAVMQPVAQPTAYAVQTQPPPQ--AQTLLQAQISAATLT 265 Query: 534 PL 539 PL Sbjct: 266 PL 267
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = +3 Query: 477 PHIPRSTQQAPE*SAEMLSPLGRQASRRKPDWRSATGRPWLQPLPGKILQARRALGGCRG 656 P P +TQQ S + P + ++P + G+P PGK+L RR G Sbjct: 427 PQRPLTTQQPQ--SGTLKEPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPSGPSL 484 Query: 657 RTSTNSATNSS 689 +S++S+++SS Sbjct: 485 PSSSSSSSSSS 495
>SYN2_RAT (Q63537) Synapsin-2 (Synapsin II)| Length = 586 Score = 30.0 bits (66), Expect = 6.9 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 477 PHIPRSTQQAPE*SAEMLSPLGRQASRRKPDWRSATGRPWLQPLPGKILQARRALGGCRG 656 P P +TQQ S + P + ++P + G+P PGK+L RR G Sbjct: 427 PQRPLTTQQPQ--SGTLKEPDSSKTPPQRPAPQGGPGQPQGMQPPGKVLPPRRLPSGPSL 484 Query: 657 RTSTNSATNSS 689 S++S+++SS Sbjct: 485 PPSSSSSSSSS 495
>DXS_BRUSU (Q8G292) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 643 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 643 PNARRACKILPGRGCSQGRPVALLQSGFRLEACLPSGESISA 518 P +I GR +G VALL G RL+ CL + E + A Sbjct: 487 PERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGA 528
>DXS_BRUME (Q8YFM2) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 643 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 643 PNARRACKILPGRGCSQGRPVALLQSGFRLEACLPSGESISA 518 P +I GR +G VALL G RL+ CL + E + A Sbjct: 487 PERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGA 528
>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)| Length = 582 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 477 PHIPRSTQQAPE*SAEMLSPLGRQASRRKPDWRSATGRPWLQPLPGKILQARRALGGCRG 656 P P +TQQ S + P + ++P + G+P PGK+L RR G Sbjct: 426 PQRPLTTQQPQ--SGTLKDPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPPGPSL 483 Query: 657 RTSTNSATNSS 689 S++S+++SS Sbjct: 484 PPSSSSSSSSS 494
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = -1 Query: 659 SAPAPTQC---SSSLQDFTGQRLQPGATSRTSPVWLSPGGLPA 540 S P+PT + + Q T Q QP A + SPV +SP G P+ Sbjct: 1881 SLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPS 1923
>FER_SULAC (P00219) Zinc-containing ferredoxin| Length = 103 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = -2 Query: 319 FSPKSWINLTGVYSTTANVSCFLCPSTPATISLLPLNSMTWMRPPGLP 176 + P + GV+ T V LC + + I+ P+N W PG P Sbjct: 22 YGPVESPKVLGVHGTIVGVDFDLCIADGSCITACPVNVFQWYETPGHP 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,221,852 Number of Sequences: 219361 Number of extensions: 2553384 Number of successful extensions: 7948 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 7540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7945 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)