ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3j20 |
|---|---|
| Clone Library Name | barley_pub |
>TSSC1_XENTR (Q5M8I4) Protein TSSC1| Length = 387 Score = 50.1 bits (118), Expect = 5e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + WSS DP LFASLSYDGR+V+ V Sbjct: 345 EHEDSVYAVEWSSADPWLFASLSYDGRLVINRV 377
>TSSC1_XENLA (Q3KPT3) Protein TSSC1| Length = 387 Score = 50.1 bits (118), Expect = 5e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + WSS DP LFASLSYDGR+V+ V Sbjct: 345 EHEDSVYAVEWSSADPWLFASLSYDGRLVINRV 377
>TSSC1_GECJA (Q6DUZ9) Protein TSSC1| Length = 387 Score = 50.1 bits (118), Expect = 5e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + WSS DP LFASLSYDGR+V+ V Sbjct: 345 EHEDSVYAVEWSSADPWLFASLSYDGRLVINRV 377
>TSSC1_PONPY (Q5RE10) Protein TSSC1| Length = 414 Score = 49.7 bits (117), Expect = 6e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + WSS DP LFASLSYDGR+V+ V Sbjct: 372 EHEDSVYAVDWSSADPWLFASLSYDGRLVINRV 404
>TSSC1_MACFA (Q4R571) Protein TSSC1| Length = 387 Score = 49.7 bits (117), Expect = 6e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + WSS DP LFASLSYDGR+V+ V Sbjct: 345 EHEDSVYAVDWSSADPWLFASLSYDGRLVINRV 377
>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 1 protein) (Tumor-suppressing STF cDNA 1 protein) Length = 387 Score = 49.7 bits (117), Expect = 6e-06 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + WSS DP LFASLSYDGR+V+ V Sbjct: 345 EHEDSVYAVDWSSADPWLFASLSYDGRLVINRV 377
>TSSC1_BRARE (Q5XJP1) Protein TSSC1| Length = 387 Score = 49.3 bits (116), Expect = 8e-06 Identities = 21/40 (52%), Positives = 29/40 (72%) Frame = -1 Query: 554 TITELVTDYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 +I ++EDS+Y + WS+ DP LFASLSYDGR+V+ V Sbjct: 338 SIISTYEEHEDSVYAVEWSAADPWLFASLSYDGRLVINRV 377
>TSSC1_RAT (Q5PPK9) Protein TSSC1| Length = 386 Score = 48.5 bits (114), Expect = 1e-05 Identities = 20/33 (60%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + W+S DP LFASLSYDGR+V+ V Sbjct: 344 EHEDSVYAVDWASADPWLFASLSYDGRLVINRV 376
>TSCC1_MOUSE (Q8K0G5) Protein TSSC1| Length = 386 Score = 48.5 bits (114), Expect = 1e-05 Identities = 20/33 (60%), Positives = 27/33 (81%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++EDS+Y + W+S DP LFASLSYDGR+V+ V Sbjct: 344 EHEDSVYAVDWASADPWLFASLSYDGRLVINRV 376
>HAT2_SCHPO (O94244) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 430 Score = 35.4 bits (80), Expect = 0.12 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -1 Query: 530 YEDSIYGIAWSSHDPSLFASLSYDGRVVL 444 +ED +YG+ WS HD + AS S D RV + Sbjct: 324 HEDEVYGLEWSPHDEPILASSSTDRRVCI 352
>WDR22_HUMAN (Q96JK2) WD-repeat protein 22 (Breakpoint cluster region protein 2)| (BCRP2) Length = 942 Score = 33.1 bits (74), Expect = 0.60 Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 2/37 (5%) Frame = -1 Query: 530 YEDSIYGIAWSSHDPSLFASLSYDGRVVLESVK--PH 426 +ED++YG++ S + ++FAS S DGRV++ ++ PH Sbjct: 141 HEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPH 177
>EZH1_MOUSE (P70351) Enhancer of zeste homolog 1 (ENX-2)| Length = 747 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/98 (21%), Positives = 44/98 (44%) Frame = +3 Query: 219 SLFPPETILDLSRHDYRDTIGVTRTESSHQPLCSPTYNGKNSTTPIICTTNKPAHEVEKI 398 S+FP + D + YR+ ++ ++ P C+P +G N+ + + H + Sbjct: 242 SMFPENGVPDDMKERYRELTEMS-DPNALPPQCTPNIDGPNAKS---VQREQSLHSFHTL 297 Query: 399 DQQASFSLQVGLHRF*NNPSIIRQRSKQRWIMGAPCNS 512 + F LH F P++ ++++K+ I PC + Sbjct: 298 FCRRCFKYDCFLHPFHATPNVYKRKNKEIKIEPEPCGT 335
>EZH1_HUMAN (Q92800) Enhancer of zeste homolog 1 (ENX-2)| Length = 747 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/98 (21%), Positives = 44/98 (44%) Frame = +3 Query: 219 SLFPPETILDLSRHDYRDTIGVTRTESSHQPLCSPTYNGKNSTTPIICTTNKPAHEVEKI 398 S+FP + D + YR+ ++ ++ P C+P +G N+ + + H + Sbjct: 242 SMFPENGVPDDMKERYRELTEMS-DPNALPPQCTPNIDGPNAKS---VQREQSLHSFHTL 297 Query: 399 DQQASFSLQVGLHRF*NNPSIIRQRSKQRWIMGAPCNS 512 + F LH F P++ ++++K+ I PC + Sbjct: 298 FCRRCFKYDCFLHPFHATPNVYKRKNKEIKIEPEPCGT 335
>WDR22_MOUSE (Q80T85) WD-repeat protein 22| Length = 946 Score = 33.1 bits (74), Expect = 0.60 Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 2/37 (5%) Frame = -1 Query: 530 YEDSIYGIAWSSHDPSLFASLSYDGRVVLESVK--PH 426 +ED++YG++ S + ++FAS S DGRV++ ++ PH Sbjct: 141 HEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPH 177
>PEX7_PICPA (O59894) Peroxisomal targeting signal 2 receptor (PTS2 receptor)| (Peroxin-7) Length = 376 Score = 32.3 bits (72), Expect = 1.0 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = -1 Query: 536 TDYEDSIYGIAWSSHDPSLFASLSYDGRVVLESVKPHLQRK*SLL 402 T+++ ++ + WS+ D +LF S S+DG V + S P R SLL Sbjct: 101 TEHQREVFSVDWSNIDKNLFCSASWDGSVKVWS--PGSNRNTSLL 143
>WDR17_HUMAN (Q8IZU2) WD-repeat protein 17| Length = 1322 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/36 (36%), Positives = 25/36 (69%) Frame = -1 Query: 542 LVTDYEDSIYGIAWSSHDPSLFASLSYDGRVVLESV 435 ++++++ +I I+W H+P LFAS S D V++ +V Sbjct: 78 IMSEHKKTITAISWCPHNPDLFASGSTDNLVIIWNV 113
>DYI2_CHLRE (Q39578) Dynein, 78 kDa intermediate chain, flagellar outer arm| (IC78) Length = 682 Score = 31.2 bits (69), Expect = 2.3 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = -1 Query: 533 DYEDSIYGIAWSSHDPSLFASLSYDGRV 450 D DSI ++W++ P++FA+++ DGRV Sbjct: 561 DLNDSIGDVSWAALQPTVFAAVTDDGRV 588
>ADA2B_RABIT (O77830) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 394 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = -2 Query: 433 SPTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 +P C+ N+ W I S+S FV +I ++ +L +Y+ +R Sbjct: 148 APQCKLNQEAWYILSSSLGSFFVPCLIMILVYLRIYLIAKR 188
>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)| Length = 4684 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Frame = +1 Query: 256 AMITEILLALLEPNHRISLFV----AQHTMARTLQHQLYAQQTSLHMKWRK*TNKLHFLC 423 A + + + PN + V AQH TL HQL+ SL + W+ + + Sbjct: 986 AAVPSVCFLVPPPNQEVQEAVTRLEAQHQALVTLWHQLHVDMKSL-LAWQSLRRDVQLIR 1044 Query: 424 RWGFTDSKTTLPS*DKEANNDGSWELH 504 W +T P ++A + S ELH Sbjct: 1045 SWSLATFRTLKPEEQRQALH--SLELH 1069
>ADA2B_MACPR (O19025) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 387 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P C+ N+ W I S+S FV +I ++ +L +Y+ +R Sbjct: 149 PQCKLNQEAWYILSSSIGSFFVPCLIMILVYLRIYLIAKR 188
>ADA2B_RAT (P19328) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) Length = 453 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQRG*C 302 P C N+ W I ++S F +I ++ +L +YV +R C Sbjct: 167 PQCELNQEAWYILASSIGSFFAPCLIMILVYLRIYVIAKRSHC 209
>ADA2B_DIDMA (O77715) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 382 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P C+ NE W I S+S F +I ++ +L +Y+ +R Sbjct: 149 PQCKLNEEAWYILSSSIGSFFAPCLIMILVYLRIYLIAKR 188
>ADA2B_ECHTE (O77723) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 384 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P CR N+ W I S+S F +I ++ +L +Y+ +R Sbjct: 149 PQCRLNQEAWYILSSSIGSFFAPCLIMILVYLRIYLIAKR 188
>ADA2B_MOUSE (P30545) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) Length = 450 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQRG*C 302 P C N+ W I ++S F +I ++ +L +YV +R C Sbjct: 162 PQCELNQEAWYILASSIGSFFAPCLIMILVYLRIYVIAKRSHC 204
>ADA2B_ORYAF (O19032) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 388 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P C+ N+ W I S+S F +I ++ +L +YV +R Sbjct: 149 PQCKLNQEAWYILSSSIGSFFAPCLIMILVYLRIYVIAKR 188
>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate| filament-associated protein) (IFAP300) (Fragment) Length = 4473 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = +1 Query: 289 EPNHRISLFVAQHTMARTLQHQLYAQQTSLHMKWRK*TNKLHFLCRWGFTDSKTTLPS*D 468 E ++ AQH TL HQL+ SL + W+ + + + W +T P Sbjct: 790 EAQEAVARLEAQHQALVTLWHQLHVDMKSL-LAWQNLSRDIQLIRSWSLVTFRTLKPEEQ 848 Query: 469 KEA 477 ++A Sbjct: 849 RQA 851
>ADA2B_BOVIN (O77700) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 392 Score = 30.0 bits (66), Expect = 5.0 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQRG*C 302 P C+ N+ W I ++S F +I ++ +L +Y+ +R C Sbjct: 149 PQCKLNQEAWYILASSIGSFFAPCLIMILVYLRIYLIAKRSHC 191
>ADA2B_ERIEU (O19012) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 391 Score = 30.0 bits (66), Expect = 5.0 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQRG*C 302 P C+ N+ W I ++S F +I ++ +L +Y+ +R C Sbjct: 149 PQCKLNQEAWYILASSIGSFFAPCLIMILVYLRIYLIAKRSHC 191
>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)| Length = 4687 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/63 (25%), Positives = 26/63 (41%) Frame = +1 Query: 289 EPNHRISLFVAQHTMARTLQHQLYAQQTSLHMKWRK*TNKLHFLCRWGFTDSKTTLPS*D 468 E ++ AQH TL HQL+ SL + W+ + + W +T P Sbjct: 1004 EAQEAVARLEAQHQALVTLWHQLHVDMKSL-LAWQSLNRDIQLIRSWSLVTFRTLKPEEQ 1062 Query: 469 KEA 477 ++A Sbjct: 1063 RQA 1065
>HAT2_DEBHA (Q6BK34) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 415 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 560 RRTITELVTDYEDSIYGIAWSSHDPSLFASLSYDGRVVL 444 ++T T +ED+ YG++WS H + S D VVL Sbjct: 154 QKTAIAHFTPHEDNGYGLSWSPHKKGYLLTASDDKTVVL 192
>CR1IA_BACTK (Q45752) Pesticidal crystal protein cry1Ia (Insecticidal| delta-endotoxin CryII(a)) (Crystaline entomocidal protoxin) (81 kDa crystal protein) Length = 719 Score = 29.3 bits (64), Expect = 8.6 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Frame = +3 Query: 183 LSCAIFFLTVTTSLFPPETILDLSRHDYRDTIGVTRTESSHQPLCSPTYNGKN--STTPI 356 L F + T ++P +T L+R Y D IG T H S T+ N S + I Sbjct: 269 LDLVALFPSYDTQMYPIKTTAQLTREVYTDAIG---TVHPHPSFTSTTWYNNNAPSFSAI 325 Query: 357 ICTTNKPAHEVEKIDQQASFSL 422 + H ++ ++Q +SL Sbjct: 326 EAAVVRNPHLLDFLEQVTIYSL 347
>ADA2B_TALEU (O19091) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 397 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = -2 Query: 433 SPTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQRG*C 302 +P C N+ W I ++S F +I ++ +L +Y+ +R C Sbjct: 148 APQCNLNQETWYILASSIGSFFAPCLIMILVYLRIYLIAKRSHC 191
>ADA2B_DUGDU (O77713) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 390 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P C+ N+ W I S+S F +I ++ +L +Y+ +R Sbjct: 149 PQCKLNQEAWYILSSSIGSFFAPCLIMILVYLRIYLIAKR 188
>ADA2B_ELEMA (O19014) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 384 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P C+ N+ W I S+S F +I ++ +L +Y+ +R Sbjct: 149 PQCKLNQEAWYILSSSIGSFFAPCLIMILVYLRIYLIAKR 188
>ADA2B_AMBHO (O18935) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 386 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -2 Query: 430 PTCRENEACWSIFSTSCAGLFVVHIIGVVEFLPLYVGLQR 311 P C+ N+ W I S+S F +I ++ +L +Y+ +R Sbjct: 149 PQCKLNQEAWYILSSSIGSFFAPCLIMILVYLRIYLIAKR 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,117,194 Number of Sequences: 219361 Number of extensions: 1662971 Number of successful extensions: 4449 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4264 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4449 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
