ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3j20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483710.1| Oryza sativa (japonica cultivar-group), mRNA 170 3e-39
2dbj|AK111661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
4dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
5dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
6ref|XM_483709.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.032
7dbj|AK112044.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.032
8emb|CT571254.7| Mouse DNA sequence from clone RP23-335F6 on chro... 44 0.51
9gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, c... 42 2.0
10gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
11gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
12emb|CT010431.7| Mouse DNA sequence from clone RP23-453M21 on chr... 42 2.0
13gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complet... 42 2.0
14emb|AL513328.12| Human DNA sequence from clone RP13-461N9 on chr... 42 2.0
15emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1-196B... 42 2.0
16gb|AC127495.2| Homo sapiens chromosome 11, clone RP11-463K8, com... 42 2.0
17gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, compl... 42 2.0
18gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence 42 2.0
19gb|AC019016.7| Homo sapiens chromosome 15, clone RP11-201P10, co... 42 2.0
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21gb|AC097314.27| Homo sapiens X BAC RP11-155F12 (Roswell Park Can... 42 2.0
22dbj|AP006724.1| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.0
23gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, com... 42 2.0
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
25gb|AC126750.3| Homo sapiens chromosome 5 clone CTD-2055H2, compl... 42 2.0
26gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, comp... 42 2.0
27gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
28gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
29gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complet... 40 7.9
30emb|AL583848.9| Human DNA sequence from clone RP11-259F4 on chro... 40 7.9
31emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on ch... 40 7.9
32gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 o... 40 7.9
33emb|AL139112.9| Human DNA sequence from clone GS1-103B18 on chro... 40 7.9
34gb|AC068858.10| Homo sapiens chromosome 11, clone RP11-255G5, co... 40 7.9
35gb|AC158764.4| Mus musculus chromosome 1, clone RP24-248C2, comp... 40 7.9
36gb|AC145124.2| Homo sapiens chromosome 8, clone XXfos-81457E3, c... 40 7.9
37gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, comp... 40 7.9
38dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 7.9
39gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, com... 40 7.9
40gb|AC104566.3| Homo sapiens chromosome 8, clone RP11-17A22, comp... 40 7.9
41gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 40 7.9
42gb|AC109324.4| Homo sapiens chromosome 8, clone CTD1-2308H5, com... 40 7.9
43gb|AC063960.10| Homo sapiens chromosome 10 clone RP11-105F10, co... 40 7.9
44gb|AC016920.14| Homo sapiens 3 BAC RP11-203L15 (Roswell Park Can... 40 7.9
45gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Canc... 40 7.9
46gb|AC008629.7| Homo sapiens chromosome 5 clone CTB-161M19, compl... 40 7.9
47gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complet... 40 7.9
48gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 40 7.9
49dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
50gb|BC094682.1| Homo sapiens cDNA clone IMAGE:6165356 40 7.9
51gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complet... 40 7.9
52gb|AC087203.12| Homo sapiens chromosome 8, clone RP11-351I21, co... 40 7.9
53gb|AC139453.10| Homo sapiens 3 BAC RP11-803B1 (Roswell Park Canc... 40 7.9
54gb|AC130337.6| Homo sapiens chromosome 8, clone RP13-204L4, comp... 40 7.9
55gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complet... 40 7.9
56gb|AC103682.4| Homo sapiens chromosome 11, clone CTD-2604L9, com... 40 7.9
57gb|AC130352.6| Homo sapiens chromosome 8, clone RP11-419I17, com... 40 7.9
58gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 40 7.9
59gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, com... 40 7.9
60dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 40 7.9
61gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, com... 40 7.9
62gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence 40 7.9
63gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 40 7.9
64emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on ch... 40 7.9
65gb|AC154735.2| Mus musculus BAC clone RP24-383B6 from chromosome... 40 7.9
66gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, comp... 40 7.9
67emb|AL772372.4| Mouse DNA sequence from clone RP23-375N21 on chr... 40 7.9
68emb|AL844151.3| Mouse DNA sequence from clone RP23-73O7 on chrom... 40 7.9 
>ref|XM_483710.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1743

 Score =  170 bits (86), Expect = 3e-39
 Identities = 153/174 (87%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 407  agcttcattttctctgcaggtggggcttcacagattctaaaacaacccttccatcataag 466
            |||||||||||||||||| || |||||| || |||||||||||||||||||| |||||||
Sbjct: 1142 agcttcattttctctgcaagtagggcttgactgattctaaaacaacccttccgtcataag 1083

                                                                        
Query: 467  acaaagaagcaaacaacgatggatcatgggagctccatgcaattccatagatgctatctt 526
            | ||||||||||| || || ||||||||||||||||||||||| || || ||||||||||
Sbjct: 1082 ataaagaagcaaataatgacggatcatgggagctccatgcaataccgtatatgctatctt 1023

                                                                  
Query: 527  cgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaaccag 579
            | || ||||| || || || ||||||||||||||||  || |||||||||||||
Sbjct: 1022 cataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaaccag 969



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 342  tctacaacaccaattatatgcacaacaaacaagcctgc 379
            |||||||||||||| |||||||||||||||||| ||||
Sbjct: 1295 tctacaacaccaataatatgcacaacaaacaagtctgc 1258
to top
>dbj|AK111661.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153B06, full
            insert sequence
          Length = 1743

 Score =  170 bits (86), Expect = 3e-39
 Identities = 153/174 (87%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 407  agcttcattttctctgcaggtggggcttcacagattctaaaacaacccttccatcataag 466
            |||||||||||||||||| || |||||| || |||||||||||||||||||| |||||||
Sbjct: 1142 agcttcattttctctgcaagtagggcttgactgattctaaaacaacccttccgtcataag 1083

                                                                        
Query: 467  acaaagaagcaaacaacgatggatcatgggagctccatgcaattccatagatgctatctt 526
            | ||||||||||| || || ||||||||||||||||||||||| || || ||||||||||
Sbjct: 1082 ataaagaagcaaataatgacggatcatgggagctccatgcaataccgtatatgctatctt 1023

                                                                  
Query: 527  cgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaaccag 579
            | || ||||| || || || ||||||||||||||||  || |||||||||||||
Sbjct: 1022 cataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaaccag 969



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 342  tctacaacaccaattatatgcacaacaaacaagcctgc 379
            |||||||||||||| |||||||||||||||||| ||||
Sbjct: 1295 tctacaacaccaataatatgcacaacaaacaagtctgc 1258
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 451      acccttccatcataagacaaagaagcaaacaacgatggatcatgggagctccatgcaat 509
                |||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct: 27699220 acccttccgtcataagataaagaagcaaataatgacggatcatgggagctccatgcaat 27699162



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 407      agcttcattttctctgcaggtggggcttcacagattctaaaacaacc 453
                |||||||||||||||||| || |||||| || |||||||||||||||
Sbjct: 27699386 agcttcattttctctgcaagtagggcttgactgattctaaaacaacc 27699340



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 342      tctacaacaccaattatatgcacaacaaacaagcctgc 379
                |||||||||||||| |||||||||||||||||| ||||
Sbjct: 27699539 tctacaacaccaataatatgcacaacaaacaagtctgc 27699502



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 517      atgctatcttcgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaa 575
                ||||||||||| || ||||| || || || ||||||||||||||||  || |||||||||
Sbjct: 27699070 atgctatcttcataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaa 27699011

                    
Query: 576      ccag 579
                ||||
Sbjct: 27699010 ccag 27699007
to top
>dbj|AP005251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0011H15
          Length = 130146

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 451   acccttccatcataagacaaagaagcaaacaacgatggatcatgggagctccatgcaat 509
             |||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct: 96564 acccttccgtcataagataaagaagcaaataatgacggatcatgggagctccatgcaat 96506



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 407   agcttcattttctctgcaggtggggcttcacagattctaaaacaacc 453
             |||||||||||||||||| || |||||| || |||||||||||||||
Sbjct: 96730 agcttcattttctctgcaagtagggcttgactgattctaaaacaacc 96684



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 342   tctacaacaccaattatatgcacaacaaacaagcctgc 379
             |||||||||||||| |||||||||||||||||| ||||
Sbjct: 96883 tctacaacaccaataatatgcacaacaaacaagtctgc 96846



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 517   atgctatcttcgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaa 575
             ||||||||||| || ||||| || || || ||||||||||||||||  || |||||||||
Sbjct: 96414 atgctatcttcataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaa 96355

                 
Query: 576   ccag 579
             ||||
Sbjct: 96354 ccag 96351
to top
>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1125_C01
          Length = 123849

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 451   acccttccatcataagacaaagaagcaaacaacgatggatcatgggagctccatgcaat 509
             |||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct: 32142 acccttccgtcataagataaagaagcaaataatgacggatcatgggagctccatgcaat 32084



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 407   agcttcattttctctgcaggtggggcttcacagattctaaaacaacc 453
             |||||||||||||||||| || |||||| || |||||||||||||||
Sbjct: 32308 agcttcattttctctgcaagtagggcttgactgattctaaaacaacc 32262



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 342   tctacaacaccaattatatgcacaacaaacaagcctgc 379
             |||||||||||||| |||||||||||||||||| ||||
Sbjct: 32461 tctacaacaccaataatatgcacaacaaacaagtctgc 32424



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 517   atgctatcttcgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaa 575
             ||||||||||| || ||||| || || || ||||||||||||||||  || |||||||||
Sbjct: 31992 atgctatcttcataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaa 31933

                 
Query: 576   ccag 579
             ||||
Sbjct: 31932 ccag 31929
to top
>ref|XM_483709.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1518

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 517  atgctatcttcgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaa 575
            ||||||||||| || ||||| || || || ||||||||||||||||  || |||||||||
Sbjct: 1031 atgctatcttcataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaa 972

                
Query: 576  ccag 579
            ||||
Sbjct: 971  ccag 968
to top
>dbj|AK112044.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C03, full
            insert sequence
          Length = 1518

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 55/64 (85%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 517  atgctatcttcgtagtcagt-tacgagttcagtaatggttcttcttgcctagtgggtgaa 575
            ||||||||||| || ||||| || || || ||||||||||||||||  || |||||||||
Sbjct: 1031 atgctatcttcataatcagtgtatgaatttagtaatggttcttcttctcttgtgggtgaa 972

                
Query: 576  ccag 579
            ||||
Sbjct: 971  ccag 968
to top
>emb|CT571254.7| Mouse DNA sequence from clone RP23-335F6 on chromosome 12, complete
             sequence
          Length = 189879

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 223   tttttcctccagaaaccatcct 244
             ||||||||||||||||||||||
Sbjct: 78950 tttttcctccagaaaccatcct 78971
to top
>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence
          Length = 191054

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   ctcagctgtgctatattcttt 203
             |||||||||||||||||||||
Sbjct: 41256 ctcagctgtgctatattcttt 41236
to top
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0052O08 map MAP_LOC, complete sequence
          Length = 154839

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 183  ctcagctgtgctatattctttttga 207
            ||||||| |||||||||||||||||
Sbjct: 2027 ctcagctctgctatattctttttga 2051
to top
>gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
           OSJNBa0018J01, complete sequence
          Length = 82510

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 183 ctcagctgtgctatattctttttga 207
           ||||||| |||||||||||||||||
Sbjct: 293 ctcagctctgctatattctttttga 269
to top
>emb|CT010431.7| Mouse DNA sequence from clone RP23-453M21 on chromosome 13, complete
              sequence
          Length = 204148

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    atttgaagatataggagaact 174
              |||||||||||||||||||||
Sbjct: 142336 atttgaagatataggagaact 142316
to top
>gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complete sequence
          Length = 137446

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 432   cttcacagattctaaaacaac 452
             |||||||||||||||||||||
Sbjct: 39850 cttcacagattctaaaacaac 39870
to top
>emb|AL513328.12| Human DNA sequence from clone RP13-461N9 on chromosome 9 Contains the
             5' end of the MUSK gene for muscle, skeletal, receptor
             tyrosine kinase and a ribosomal protein S21 (RPS21)
             pseudogene, complete sequence
          Length = 126999

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 380   acatgaagtggagaaaataga 400
             |||||||||||||||||||||
Sbjct: 47645 acatgaagtggagaaaataga 47625
to top
>emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1-196B13 on chromosome 6q22.2-22.33
             Contains part of the TCBA1 gene for T-cell lymphoma
             breakpoint associated target 1, complete sequence
          Length = 124219

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 462   ataagacaaagaagcaaacaa 482
             |||||||||||||||||||||
Sbjct: 93399 ataagacaaagaagcaaacaa 93379
to top
>gb|AC127495.2| Homo sapiens chromosome 11, clone RP11-463K8, complete sequence
          Length = 178648

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 432   cttcacagattctaaaacaac 452
             |||||||||||||||||||||
Sbjct: 11826 cttcacagattctaaaacaac 11806
to top
>gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, complete sequence
          Length = 167763

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 432    cttcacagattctaaaacaac 452
              |||||||||||||||||||||
Sbjct: 132190 cttcacagattctaaaacaac 132210
to top
>gb|AC018563.7| Homo sapiens, clone RP11-122D10, complete sequence
          Length = 174691

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    cttatacttcatcacatcatg 61
             |||||||||||||||||||||
Sbjct: 24523 cttatacttcatcacatcatg 24503
to top
>gb|AC019016.7| Homo sapiens chromosome 15, clone RP11-201P10, complete sequence
          Length = 53718

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   cttatacttcatcacatcatg 61
            |||||||||||||||||||||
Sbjct: 4902 cttatacttcatcacatcatg 4922
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 183     ctcagctgtgctatattctttttga 207
               ||||||| |||||||||||||||||
Sbjct: 4220517 ctcagctctgctatattctttttga 4220541
to top
>gb|AC097314.27| Homo sapiens X BAC RP11-155F12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 80501

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    aacagttatcagaattctagt 104
             |||||||||||||||||||||
Sbjct: 11602 aacagttatcagaattctagt 11622
to top
>dbj|AP006724.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-17M1, complete
              sequence
          Length = 171460

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 432    cttcacagattctaaaacaac 452
              |||||||||||||||||||||
Sbjct: 105172 cttcacagattctaaaacaac 105192
to top
>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence
          Length = 200503

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    ctcagctgtgctatattcttt 203
              |||||||||||||||||||||
Sbjct: 165423 ctcagctgtgctatattcttt 165403
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 183     ctcagctgtgctatattctttttga 207
               ||||||| |||||||||||||||||
Sbjct: 4229211 ctcagctctgctatattctttttga 4229235
to top
>gb|AC126750.3| Homo sapiens chromosome 5 clone CTD-2055H2, complete sequence
          Length = 120765

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 432   cttcacagattctaaaacaac 452
             |||||||||||||||||||||
Sbjct: 79816 cttcacagattctaaaacaac 79836
to top
>gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, complete sequence
          Length = 145789

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 432    cttcacagattctaaaacaac 452
              |||||||||||||||||||||
Sbjct: 140421 cttcacagattctaaaacaac 140401
to top
>gb|AC135422.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0043H23, complete sequence
          Length = 134097

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   tttgtagcccaacatacaatggca 336
             ||||||||| ||||||||||||||
Sbjct: 52176 tttgtagccaaacatacaatggca 52199
to top
>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08,
             complete sequence
          Length = 152527

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   tttgtagcccaacatacaatggca 336
             ||||||||| ||||||||||||||
Sbjct: 87654 tttgtagccaaacatacaatggca 87677
to top
>gb|AC104789.4| Homo sapiens BAC clone RP11-138B1 from 7, complete sequence
          Length = 142048

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   ttcacagattctaaaacaac 452
             ||||||||||||||||||||
Sbjct: 17170 ttcacagattctaaaacaac 17189
to top
>emb|AL583848.9| Human DNA sequence from clone RP11-259F4 on chromosome 13 Contains a
             novel transcript and a CpG island, complete sequence
          Length = 70527

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tgctatattctttttgactg 210
             ||||||||||||||||||||
Sbjct: 38502 tgctatattctttttgactg 38483
to top
>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two
             CpG islands, complete sequence
          Length = 124506

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 381   catgaagtggagaaaatagaccaa 404
             |||||||||||||||||| |||||
Sbjct: 77713 catgaagtggagaaaatataccaa 77690
to top
>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome
          Length = 300923

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    tttccccagaaatccaaaat 136
              ||||||||||||||||||||
Sbjct: 120818 tttccccagaaatccaaaat 120799
to top
>emb|AL139112.9| Human DNA sequence from clone GS1-103B18 on chromosome Xq27.1-27.3
             Contains a cytochrome c (CYCS) pseudogene, complete
             sequence
          Length = 95356

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   cccaacatacaatggcaaga 339
             ||||||||||||||||||||
Sbjct: 47321 cccaacatacaatggcaaga 47302
to top
>gb|AC068858.10| Homo sapiens chromosome 11, clone RP11-255G5, complete sequence
          Length = 113958

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   cccaacatacaatggcaaga 339
             ||||||||||||||||||||
Sbjct: 16927 cccaacatacaatggcaaga 16946
to top
>gb|AC158764.4| Mus musculus chromosome 1, clone RP24-248C2, complete sequence
          Length = 165228

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    aaaatttgaagatataggag 170
              ||||||||||||||||||||
Sbjct: 119204 aaaatttgaagatataggag 119223
to top
>gb|AC145124.2| Homo sapiens chromosome 8, clone XXfos-81457E3, complete sequence
          Length = 35922

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 16071 caacaaacaagccagcacatgaag 16048
to top
>gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, complete sequence
          Length = 158209

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 67671 caacaaacaagccagcacatgaag 67694
to top
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 146     gtggcaaaatttgaagatataggagaac 173
               |||||||||||| ||||||||| |||||
Sbjct: 3814167 gtggcaaaatttaaagatatagcagaac 3814140



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 146    gtggcaaaatttgaagatataggagaac 173
              |||||||||||| ||||||||| |||||
Sbjct: 178311 gtggcaaaatttaaagatatagcagaac 178284
to top
>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence
          Length = 158535

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    cttcacagattctaaaacaa 451
              ||||||||||||||||||||
Sbjct: 133070 cttcacagattctaaaacaa 133051
to top
>gb|AC104566.3| Homo sapiens chromosome 8, clone RP11-17A22, complete sequence
          Length = 115732

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   cttcacagattctaaaacaa 451
             ||||||||||||||||||||
Sbjct: 25699 cttcacagattctaaaacaa 25718
to top
>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 29967 caacaaacaagccagcacatgaag 29944
to top
>gb|AC109324.4| Homo sapiens chromosome 8, clone CTD1-2308H5, complete sequence
          Length = 67922

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 40760 caacaaacaagccagcacatgaag 40783
to top
>gb|AC063960.10| Homo sapiens chromosome 10 clone RP11-105F10, complete sequence
          Length = 174677

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 143   ctggtggcaaaatttgaagatata 166
             |||||||||||||||||| |||||
Sbjct: 72558 ctggtggcaaaatttgaatatata 72581
to top
>gb|AC016920.14| Homo sapiens 3 BAC RP11-203L15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 142127

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   aaaatgaataactggtggcaaaat 155
             |||| |||||||||||||||||||
Sbjct: 36698 aaaaagaataactggtggcaaaat 36675
to top
>gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138313

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 364    caacaaacaagcctgcacatgaag 387
              ||||||||||||| ||||||||||
Sbjct: 105059 caacaaacaagccagcacatgaag 105036
to top
>gb|AC008629.7| Homo sapiens chromosome 5 clone CTB-161M19, complete sequence
          Length = 151881

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   catcactttttcctccagaa 236
             ||||||||||||||||||||
Sbjct: 73598 catcactttttcctccagaa 73617
to top
>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence
          Length = 199331

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    caattccatagatgctatct 525
              ||||||||||||||||||||
Sbjct: 172053 caattccatagatgctatct 172034
to top
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tttccccagaaatccaaaat 136
              ||||||||||||||||||||
Sbjct: 717878 tttccccagaaatccaaaat 717897
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 313     tttgtagcccaacatacaatggca 336
               ||||||||| ||||||||||||||
Sbjct: 7349399 tttgtagccaaacatacaatggca 7349422
to top
>gb|BC094682.1| Homo sapiens cDNA clone IMAGE:6165356
          Length = 1393

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 364  caacaaacaagcctgcacatgaag 387
            ||||||||||||| ||||||||||
Sbjct: 1004 caacaaacaagccagcacatgaag 1027
to top
>gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complete sequence
          Length = 129660

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aatttgaagatataggagaa 172
              ||||||||||||||||||||
Sbjct: 124583 aatttgaagatataggagaa 124564
to top
>gb|AC087203.12| Homo sapiens chromosome 8, clone RP11-351I21, complete sequence
          Length = 117500

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 95387 caacaaacaagccagcacatgaag 95364
to top
>gb|AC139453.10| Homo sapiens 3 BAC RP11-803B1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 149461

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 85436 caacaaacaagccagcacatgaag 85459
to top
>gb|AC130337.6| Homo sapiens chromosome 8, clone RP13-204L4, complete sequence
          Length = 162510

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 28550 caacaaacaagccagcacatgaag 28573
to top
>gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complete sequence
          Length = 159471

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aatttgaagatataggagaa 172
              ||||||||||||||||||||
Sbjct: 136854 aatttgaagatataggagaa 136835
to top
>gb|AC103682.4| Homo sapiens chromosome 11, clone CTD-2604L9, complete sequence
          Length = 57561

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  cccaacatacaatggcaaga 339
            ||||||||||||||||||||
Sbjct: 2143 cccaacatacaatggcaaga 2124
to top
>gb|AC130352.6| Homo sapiens chromosome 8, clone RP11-419I17, complete sequence
          Length = 177211

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 364   caacaaacaagcctgcacatgaag 387
             ||||||||||||| ||||||||||
Sbjct: 53204 caacaaacaagccagcacatgaag 53181
to top
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    tttccccagaaatccaaaat 136
              ||||||||||||||||||||
Sbjct: 123323 tttccccagaaatccaaaat 123304
to top
>gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, complete sequence
          Length = 195488

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    caacaaacaagcctgcacatgaag 387
              ||||||||||||| ||||||||||
Sbjct: 108675 caacaaacaagccagcacatgaag 108698
to top
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    tttccccagaaatccaaaat 136
              ||||||||||||||||||||
Sbjct: 122994 tttccccagaaatccaaaat 122975
to top
>gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, complete sequence
          Length = 189761

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    aaaatttgaagatataggag 170
              ||||||||||||||||||||
Sbjct: 181261 aaaatttgaagatataggag 181280
to top
>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence
          Length = 282600

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    attatatgcacaacaaacaa 373
              ||||||||||||||||||||
Sbjct: 224144 attatatgcacaacaaacaa 224125



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    attatatgcacaacaaacaa 373
              ||||||||||||||||||||
Sbjct: 219565 attatatgcacaacaaacaa 219546
to top
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    attatatgcacaacaaacaa 373
              ||||||||||||||||||||
Sbjct: 231000 attatatgcacaacaaacaa 230981



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    attatatgcacaacaaacaa 373
              ||||||||||||||||||||
Sbjct: 226424 attatatgcacaacaaacaa 226405
to top
>emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on chromosome 16, complete
            sequence
          Length = 238459

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ggcttcaacagttatcagaa 97
            ||||||||||||||||||||
Sbjct: 4562 ggcttcaacagttatcagaa 4581
to top
>gb|AC154735.2| Mus musculus BAC clone RP24-383B6 from chromosome 16, complete sequence
          Length = 224440

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ggcttcaacagttatcagaa 97
              ||||||||||||||||||||
Sbjct: 202924 ggcttcaacagttatcagaa 202943
to top
>gb|AC158559.7| Mus musculus chromosome 1, clone RP24-300L5, complete sequence
          Length = 169324

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ggaccaggcttcaacagtta 91
              ||||||||||||||||||||
Sbjct: 166962 ggaccaggcttcaacagtta 166981
to top
>emb|AL772372.4| Mouse DNA sequence from clone RP23-375N21 on chromosome 2, complete
              sequence
          Length = 210503

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    ctttttcctccagaaaccat 241
              ||||||||||||||||||||
Sbjct: 142149 ctttttcctccagaaaccat 142168
to top
>emb|AL844151.3| Mouse DNA sequence from clone RP23-73O7 on chromosome X, complete
              sequence
          Length = 134513

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    caattccatagatgctatct 525
              ||||||||||||||||||||
Sbjct: 113584 caattccatagatgctatct 113565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,791,045
Number of Sequences: 3902068
Number of extensions: 5791045
Number of successful extensions: 109799
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109112
Number of HSP's gapped (non-prelim): 685
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top