ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3j13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493889.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1188 Score = 157 bits (79), Expect = 5e-35 Identities = 169/199 (84%) Strand = Plus / Minus Query: 319 acctgctccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgac 378 |||||||||||| | ||||||| | | | ||| | |||| ||||||||| ||||||| Sbjct: 1043 acctgctccatgttaggcctgttcttggcctccacagagatgcattgaagtgccagtgtt 984 Query: 379 gctgtcttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcgg 438 || | ||||||||||||||| ||||||||||||||||||| |||| |||||| | |||| Sbjct: 983 gcagccttctgggccttggcaagggagtactgcccgcccaaccgggcgtccaggatgcgg 924 Query: 439 aagatgcgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccg 498 |||||||||||||||||| ||||||| || | |||||||||||||| |||||||| ||| Sbjct: 923 aagatgcgccgcttgctcatcaggtatggcctagcccactccaccagattgtgctccccg 864 Query: 499 gttggctggttcttgtcca 517 ||||| |||||||||||| Sbjct: 863 gttgggcggttcttgtcca 845
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 157 bits (79), Expect = 5e-35 Identities = 169/199 (84%) Strand = Plus / Plus Query: 319 acctgctccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgac 378 |||||||||||| | ||||||| | | | ||| | |||| ||||||||| ||||||| Sbjct: 63678 acctgctccatgttaggcctgttcttggcctccacagagatgcattgaagtgccagtgtt 63737 Query: 379 gctgtcttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcgg 438 || | ||||||||||||||| ||||||||||||||||||| |||| |||||| | |||| Sbjct: 63738 gcagccttctgggccttggcaagggagtactgcccgcccaaccgggcgtccaggatgcgg 63797 Query: 439 aagatgcgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccg 498 |||||||||||||||||| ||||||| || | |||||||||||||| |||||||| ||| Sbjct: 63798 aagatgcgccgcttgctcatcaggtatggcctagcccactccaccagattgtgctccccg 63857 Query: 499 gttggctggttcttgtcca 517 ||||| |||||||||||| Sbjct: 63858 gttgggcggttcttgtcca 63876
>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence Length = 151589 Score = 157 bits (79), Expect = 5e-35 Identities = 169/199 (84%) Strand = Plus / Plus Query: 319 acctgctccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgac 378 |||||||||||| | ||||||| | | | ||| | |||| ||||||||| ||||||| Sbjct: 146077 acctgctccatgttaggcctgttcttggcctccacagagatgcattgaagtgccagtgtt 146136 Query: 379 gctgtcttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcgg 438 || | ||||||||||||||| ||||||||||||||||||| |||| |||||| | |||| Sbjct: 146137 gcagccttctgggccttggcaagggagtactgcccgcccaaccgggcgtccaggatgcgg 146196 Query: 439 aagatgcgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccg 498 |||||||||||||||||| ||||||| || | |||||||||||||| |||||||| ||| Sbjct: 146197 aagatgcgccgcttgctcatcaggtatggcctagcccactccaccagattgtgctccccg 146256 Query: 499 gttggctggttcttgtcca 517 ||||| |||||||||||| Sbjct: 146257 gttgggcggttcttgtcca 146275
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 157 bits (79), Expect = 5e-35 Identities = 169/199 (84%) Strand = Plus / Plus Query: 319 acctgctccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgac 378 |||||||||||| | ||||||| | | | ||| | |||| ||||||||| ||||||| Sbjct: 546279 acctgctccatgttaggcctgttcttggcctccacagagatgcattgaagtgccagtgtt 546338 Query: 379 gctgtcttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcgg 438 || | ||||||||||||||| ||||||||||||||||||| |||| |||||| | |||| Sbjct: 546339 gcagccttctgggccttggcaagggagtactgcccgcccaaccgggcgtccaggatgcgg 546398 Query: 439 aagatgcgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccg 498 |||||||||||||||||| ||||||| || | |||||||||||||| |||||||| ||| Sbjct: 546399 aagatgcgccgcttgctcatcaggtatggcctagcccactccaccagattgtgctccccg 546458 Query: 499 gttggctggttcttgtcca 517 ||||| |||||||||||| Sbjct: 546459 gttgggcggttcttgtcca 546477
>dbj|AK073169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020B11, full insert sequence Length = 2039 Score = 157 bits (79), Expect = 5e-35 Identities = 169/199 (84%) Strand = Plus / Minus Query: 319 acctgctccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgac 378 |||||||||||| | ||||||| | | | ||| | |||| ||||||||| ||||||| Sbjct: 1595 acctgctccatgttaggcctgttcttggcctccacagagatgcattgaagtgccagtgtt 1536 Query: 379 gctgtcttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcgg 438 || | ||||||||||||||| ||||||||||||||||||| |||| |||||| | |||| Sbjct: 1535 gcagccttctgggccttggcaagggagtactgcccgcccaaccgggcgtccaggatgcgg 1476 Query: 439 aagatgcgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccg 498 |||||||||||||||||| ||||||| || | |||||||||||||| |||||||| ||| Sbjct: 1475 aagatgcgccgcttgctcatcaggtatggcctagcccactccaccagattgtgctccccg 1416 Query: 499 gttggctggttcttgtcca 517 ||||| |||||||||||| Sbjct: 1415 gttgggcggttcttgtcca 1397
>gb|AY106357.1| Zea mays PCO078250 mRNA sequence Length = 2030 Score = 153 bits (77), Expect = 7e-34 Identities = 182/217 (83%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| | ||||||||||| || || || | ||| | | Sbjct: 1556 tccatgctgggcctgtgcctggactccaccgagaggcattgcagggcgagcgccgcagcc 1497 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| |||| |||||||||||||||||||| || |||||||| | ||| || ||| Sbjct: 1496 ttctgcgccctggcaagggagtactgcccgcccagccgtgggtccaggatgcgaaatatg 1437 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||||||||| ||||||| || | ||||||||||||||||||||||| ||| | || Sbjct: 1436 cgccgcttgcttctcaggtatggcctagcccactccaccaggttgtgctccccgttcggg 1377 Query: 505 tggttcttgtccaccgcacgccgccccgacagcatct 541 |||||||||||| ||| |||||||| |||||||||| Sbjct: 1376 cggttcttgtccagcgcccgccgccctgacagcatct 1340
>gb|DQ430561.1| Sorghum propinquum locus S0078 genomic sequence Length = 580 Score = 121 bits (61), Expect = 3e-24 Identities = 160/193 (82%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || ||||| || | | Sbjct: 518 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagtgatgcagcc 459 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 458 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 399 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 |||||||| || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 398 cgccgcttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 339 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 338 cggttcttgtcca 326
>ref|NM_189481.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1404 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 396 ggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatgcgccgcttgct 455 |||||| |||||||| ||| | || |||| |||||| | ||||||||| || ||| |||| Sbjct: 1158 ggcgagcgagtactggccggcgaggcgggcgtccaggatgcggaagatccggcgcctgct 1099 Query: 456 cgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggctggttcttgtc 515 | ||||| || || |||||||||||||||||||||||||||| || |||||||||| Sbjct: 1098 gctgaggtagggccgagcccactccaccaggttgtgctcgccggcggggcggttcttgtc 1039 Query: 516 caccgcacgccgccccgacagcatct 541 || ||| ||||||||||||||||||| Sbjct: 1038 cagcgcgcgccgccccgacagcatct 1013
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 396 ggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatgcgccgcttgct 455 |||||| |||||||| ||| | || |||| |||||| | ||||||||| || ||| |||| Sbjct: 42974107 ggcgagcgagtactggccggcgaggcgggcgtccaggatgcggaagatccggcgcctgct 42974166 Query: 456 cgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggctggttcttgtc 515 | ||||| || || |||||||||||||||||||||||||||| || |||||||||| Sbjct: 42974167 gctgaggtagggccgagcccactccaccaggttgtgctcgccggcggggcggttcttgtc 42974226 Query: 516 caccgcacgccgccccgacagcatct 541 || ||| ||||||||||||||||||| Sbjct: 42974227 cagcgcgcgccgccccgacagcatct 42974252
>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698H10 Length = 153449 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 396 ggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatgcgccgcttgct 455 |||||| |||||||| ||| | || |||| |||||| | ||||||||| || ||| |||| Sbjct: 74986 ggcgagcgagtactggccggcgaggcgggcgtccaggatgcggaagatccggcgcctgct 75045 Query: 456 cgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggctggttcttgtc 515 | ||||| || || |||||||||||||||||||||||||||| || |||||||||| Sbjct: 75046 gctgaggtagggccgagcccactccaccaggttgtgctcgccggcggggcggttcttgtc 75105 Query: 516 caccgcacgccgccccgacagcatct 541 || ||| ||||||||||||||||||| Sbjct: 75106 cagcgcgcgccgccccgacagcatct 75131
>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518C01 Length = 173555 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 396 ggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatgcgccgcttgct 455 |||||| |||||||| ||| | || |||| |||||| | ||||||||| || ||| |||| Sbjct: 167841 ggcgagcgagtactggccggcgaggcgggcgtccaggatgcggaagatccggcgcctgct 167900 Query: 456 cgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggctggttcttgtc 515 | ||||| || || |||||||||||||||||||||||||||| || |||||||||| Sbjct: 167901 gctgaggtagggccgagcccactccaccaggttgtgctcgccggcggggcggttcttgtc 167960 Query: 516 caccgcacgccgccccgacagcatct 541 || ||| ||||||||||||||||||| Sbjct: 167961 cagcgcgcgccgccccgacagcatct 167986
>dbj|AK069546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023F24, full insert sequence Length = 1841 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 396 ggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatgcgccgcttgct 455 |||||| |||||||| ||| | || |||| |||||| | ||||||||| || ||| |||| Sbjct: 1329 ggcgagcgagtactggccggcgaggcgggcgtccaggatgcggaagatccggcgcctgct 1270 Query: 456 cgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggctggttcttgtc 515 | ||||| || || |||||||||||||||||||||||||||| || |||||||||| Sbjct: 1269 gctgaggtagggccgagcccactccaccaggttgtgctcgccggcggggcggttcttgtc 1210 Query: 516 caccgcacgccgccccgacagcatct 541 || ||| ||||||||||||||||||| Sbjct: 1209 cagcgcgcgccgccccgacagcatct 1184
>gb|DQ430560.1| Sorghum bicolor voucher PI585454 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430559.1| Sorghum bicolor voucher PI267539 locus S0078 genomic sequence Length = 580 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 518 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 459 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 458 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 399 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 |||| ||| || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 398 cgcctcttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 339 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 338 cggttcttgtcca 326
>gb|DQ430558.1| Sorghum bicolor voucher PI267408 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430557.1| Sorghum bicolor voucher PI221607 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430556.1| Sorghum bicolor voucher PI152702 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430555.1| Sorghum bicolor voucher NSL92371 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430554.1| Sorghum bicolor voucher NSL87902 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430553.1| Sorghum bicolor voucher NSL87666 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430552.1| Sorghum bicolor voucher NSL77217 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430551.1| Sorghum bicolor voucher NSL77034 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430550.1| Sorghum bicolor voucher NSL56174 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430549.1| Sorghum bicolor voucher NSL56003 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430548.1| Sorghum bicolor voucher NSL55243 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430547.1| Sorghum bicolor voucher NSL51365 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430546.1| Sorghum bicolor voucher NSL51030 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430545.1| Sorghum bicolor voucher NSL50875 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>gb|DQ430544.1| Sorghum bicolor voucher BTx623 locus S0078 genomic sequence Length = 579 Score = 97.6 bits (49), Expect = 4e-17 Identities = 157/193 (81%) Strand = Plus / Minus Query: 325 tccatgctcggcctgtgcctcgagtccgctgagaggcattgaagcgccagtgacgctgtc 384 |||||||| ||||||||||| || ||| ||||||||||||| | || || | || | | Sbjct: 517 tccatgctgggcctgtgcctggactccactgagaggcattgcaatgcgagcgctgcagcc 458 Query: 385 ttctgggccttggcgagggagtactgcccgcccagacgggggtccagcacgcggaagatg 444 ||||| ||| | || |||||||||||||| ||||| ||||||||||| | ||| || ||| Sbjct: 457 ttctgcgccctagcaagggagtactgcccacccagccgggggtccaggatgcgaaatatg 398 Query: 445 cgccgcttgctcgtcaggtacggtcgcgcccactccaccaggttgtgctcgccggttggc 504 ||||| || || ||||||| || | ||||||||||||||||||||||| || |||| Sbjct: 397 cgccgtttacttctcaggtatggcctagcccactccaccaggttgtgctccccatttggg 338 Query: 505 tggttcttgtcca 517 |||||||||||| Sbjct: 337 cggttcttgtcca 325
>ref|XM_470532.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 457 gtcaggtacggtcgcgcccactccaccaggttgtgctc 494 ||||||||||| || ||||||||||||||||| ||||| Sbjct: 1013 gtcaggtacggccgggcccactccaccaggttctgctc 976
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 457 gtcaggtacggtcgcgcccactccaccaggttgtgctc 494 ||||||||||| || ||||||||||||||||| ||||| Sbjct: 4160137 gtcaggtacggccgggcccactccaccaggttctgctc 4160100 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Plus Query: 472 gcccactccaccaggttgtgctcgccggttggctggttcttgtccaccgcacgccgcccc 531 |||||||||||||||||||||| || | ||| |||||||||||| || ||| |||| Sbjct: 9243004 gcccactccaccaggttgtgctgccccggaggccggttcttgtccagggcgcgctgcccg 9243063 Query: 532 gacagca 538 ||||||| Sbjct: 9243064 gacagca 9243070 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 gtacggtcgcgcccactccaccag 485 |||||| ||||||||||||||||| Sbjct: 1755092 gtacggccgcgcccactccaccag 1755069
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 457 gtcaggtacggtcgcgcccactccaccaggttgtgctc 494 ||||||||||| || ||||||||||||||||| ||||| Sbjct: 4160246 gtcaggtacggccgggcccactccaccaggttctgctc 4160209 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Plus Query: 472 gcccactccaccaggttgtgctcgccggttggctggttcttgtccaccgcacgccgcccc 531 |||||||||||||||||||||| || | ||| |||||||||||| || ||| |||| Sbjct: 9240837 gcccactccaccaggttgtgctgccccggaggccggttcttgtccagggcgcgctgcccg 9240896 Query: 532 gacagca 538 ||||||| Sbjct: 9240897 gacagca 9240903 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 gtacggtcgcgcccactccaccag 485 |||||| ||||||||||||||||| Sbjct: 1755090 gtacggccgcgcccactccaccag 1755067
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 457 gtcaggtacggtcgcgcccactccaccaggttgtgctc 494 ||||||||||| || ||||||||||||||||| ||||| Sbjct: 60774 gtcaggtacggccgggcccactccaccaggttctgctc 60737
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 508 ttcttgtccaccgcacgccgccccgacagcatct 541 |||||||||| ||| ||||||||||||||||||| Sbjct: 104608 ttcttgtccagcgcccgccgccccgacagcatct 104641
>dbj|AK107046.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C09, full insert sequence Length = 1820 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 457 gtcaggtacggtcgcgcccactccaccaggttgtgctc 494 ||||||||||| || ||||||||||||||||| ||||| Sbjct: 1211 gtcaggtacggccgggcccactccaccaggttctgctc 1174
>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032O19, from chromosome 3, complete sequence Length = 142248 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Minus Query: 472 gcccactccaccaggttgtgctcgccggttggctggttcttgtccaccgcacgccgcccc 531 |||||||||||||||||||||| || | ||| |||||||||||| || ||| |||| Sbjct: 43387 gcccactccaccaggttgtgctgccccggaggccggttcttgtccagggcgcgctgcccg 43328 Query: 532 gacagca 538 ||||||| Sbjct: 43327 gacagca 43321
>gb|AF044807.1|AF044807 Lampetra planeri homeobox protein LpHox8A gene, partial cds Length = 82 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 gatgcgccgcttgctcgtcaggtacgg 467 |||||||||||||| |||||||||||| Sbjct: 37 gatgcgccgcttgcgcgtcaggtacgg 11
>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence Length = 134014 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Minus Query: 472 gcccactccaccaggttgtgctcgccggttggctggttcttgtccaccgcacgccgcccc 531 |||||||||||||||||||||| || | ||| |||||||||||| || ||| |||| Sbjct: 113249 gcccactccaccaggttgtgctgccccggaggccggttcttgtccagggcgcgctgcccg 113190 Query: 532 gacagca 538 ||||||| Sbjct: 113189 gacagca 113183
>dbj|AB125274.1| Lethenteron japonicum mRNA for LjHoxQ8 Homeobox, partial cds Length = 228 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 gatgcgccgcttgctcgtcaggtacgg 467 |||||||||||||| |||||||||||| Sbjct: 135 gatgcgccgcttgcgcgtcaggtacgg 109
>dbj|AK102905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113F11, full insert sequence Length = 1608 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Minus Query: 472 gcccactccaccaggttgtgctcgccggttggctggttcttgtccaccgcacgccgcccc 531 |||||||||||||||||||||| || | ||| |||||||||||| || ||| |||| Sbjct: 1117 gcccactccaccaggttgtgctgccccggaggccggttcttgtccagggcgcgctgcccg 1058 Query: 532 gacagca 538 ||||||| Sbjct: 1057 gacagca 1051
>gb|AF035591.1|PMHOXQ2 Petromyzon marinus homeobox protein HoxQ8 (HoxQ8) gene, exon 2 and complete cds Length = 307 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 gatgcgccgcttgctcgtcaggtacgg 467 |||||||||||||| |||||||||||| Sbjct: 103 gatgcgccgcttgcgcgtcaggtacgg 77
>gb|AF035589.1|AF035589 Petromyzon marinus homeobox protein HoxQ8a (HoxQ8a) gene, partial cds Length = 180 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 gatgcgccgcttgctcgtcaggtacgg 467 |||||||||||||| |||||||||||| Sbjct: 96 gatgcgccgcttgcgcgtcaggtacgg 70
>gb|L14903.1|FSAHOXP60R Petromyzon marinus (clone Pm60-r) homeobox gene, partial cds Length = 82 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 gatgcgccgcttgctcgtcaggtacgg 467 |||||||||||||| |||||||||||| Sbjct: 37 gatgcgccgcttgcgcgtcaggtacgg 11
>gb|L14901.1|FSAHOXP57Q Petromyzon marinus (clone Pm57-q) homeobox gene, partial cds Length = 82 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 441 gatgcgccgcttgctcgtcaggtacgg 467 |||||||||||||| |||||||||||| Sbjct: 37 gatgcgccgcttgcgcgtcaggtacgg 11
>ref|XM_953832.1| Neurospora crassa OR74A hypothetical protein (NCU09346.1) partial mRNA Length = 6888 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tgctccggctgctgctcggctt 248 |||||||||||||||||||||| Sbjct: 1565 tgctccggctgctgctcggctt 1544
>ref|XM_332037.1| Neurospora crassa OR74A hypothetical protein (NCU09346.1) partial mRNA Length = 6888 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tgctccggctgctgctcggctt 248 |||||||||||||||||||||| Sbjct: 1565 tgctccggctgctgctcggctt 1544
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 agcgccacgacgacctgctcc 327 ||||||||||||||||||||| Sbjct: 2407708 agcgccacgacgacctgctcc 2407688
>gb|AC147565.4| Mus musculus BAC clone RP23-116P18 from 9, complete sequence Length = 206373 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 tcgtggagctgctccagcgcc 312 ||||||||||||||||||||| Sbjct: 129444 tcgtggagctgctccagcgcc 129464
>ref|XM_470172.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1173 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 gtacggtcgcgcccactccaccag 485 |||||| ||||||||||||||||| Sbjct: 900 gtacggccgcgcccactccaccag 877
>gb|AY596292.1| Haloarcula marismortui ATCC 43049 plasmid pNG300, complete sequence Length = 39521 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ttggtcgacgacggtctcga 218 |||||||||||||||||||| Sbjct: 14021 ttggtcgacgacggtctcga 14002
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0077O14, complete sequence Length = 124915 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccacaaaacattcacaaatc 70 |||||||||||||||||||| Sbjct: 96499 ccacaaaacattcacaaatc 96480
>gb|AC123662.13| Mus musculus chromosome 5, clone RP23-213N8, complete sequence Length = 223267 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 taaatcacagccacaaaacattca 64 ||||||||||||| |||||||||| Sbjct: 25860 taaatcacagccagaaaacattca 25837
>gb|AC102916.5| Mus musculus chromosome 5, clone RP24-274I18, complete sequence Length = 144142 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 taaatcacagccacaaaacattca 64 ||||||||||||| |||||||||| Sbjct: 20723 taaatcacagccagaaaacattca 20746
>ref|XM_655255.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2743.2), mRNA Length = 3162 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tctcgagccggtcatgctcc 232 |||||||||||||||||||| Sbjct: 144 tctcgagccggtcatgctcc 163
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 cctgctccatgctcggcctgtgcc 343 ||||| |||||||||||||||||| Sbjct: 5270970 cctgcaccatgctcggcctgtgcc 5270947
>gb|AC163027.5| Mus musculus chromosome 5, clone RP23-396H22, complete sequence Length = 216377 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gctgctgctcggcttccttt 253 |||||||||||||||||||| Sbjct: 139362 gctgctgctcggcttccttt 139343
>emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on chromosome 9 Contains a novel gene, complete sequence Length = 169430 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 ggctgctgctcggcttcctttgca 256 ||||||||||| |||||||||||| Sbjct: 22411 ggctgctgctctgcttcctttgca 22388
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 ccgatgcctcgtcgcagatcgcct 93 ||||| |||||||||||||||||| Sbjct: 3531805 ccgatccctcgtcgcagatcgcct 3531782
>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the FAM27C gene for family with sequence similarity 27, member C, three novel genes, five novel pseudogenes and six CpG islands, complete sequence Length = 202081 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 ggctgctgctcggcttcctttgca 256 ||||||||||| |||||||||||| Sbjct: 57191 ggctgctgctctgcttcctttgca 57214
>emb|AL355151.11| Human DNA sequence from clone RP11-288C24 on chromosome 9, complete sequence Length = 95128 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 ggctgctgctcggcttcctttgca 256 ||||||||||| |||||||||||| Sbjct: 85895 ggctgctgctctgcttcctttgca 85918
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 gtccaccgcacgccgccccg 532 |||||||||||||||||||| Sbjct: 79883 gtccaccgcacgccgccccg 79864
>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08, complete sequence Length = 133090 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 gtacggtcgcgcccactccaccag 485 |||||| ||||||||||||||||| Sbjct: 79270 gtacggccgcgcccactccaccag 79293
>gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 from 4, complete sequence Length = 163201 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tacattacacctgaactcaa 136 |||||||||||||||||||| Sbjct: 26413 tacattacacctgaactcaa 26432
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccacaaaacattcacaaatc 70 |||||||||||||||||||| Sbjct: 10619333 ccacaaaacattcacaaatc 10619352
>gb|AC118598.8| Mus musculus chromosome 5, clone RP23-446M13, complete sequence Length = 186276 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gctgctgctcggcttccttt 253 |||||||||||||||||||| Sbjct: 117078 gctgctgctcggcttccttt 117059
>dbj|AK109138.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E06, full insert sequence Length = 906 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 gtacggtcgcgcccactccaccag 485 |||||| ||||||||||||||||| Sbjct: 499 gtacggccgcgcccactccaccag 476
>gb|AF127374.1|AF127374 Streptomyces lavendulae LinA homolog, cytochrome P450 hydroxylase ORF4, cytochrome P450 hydroxylase ORF3, MitT (mitT), MitS (mitS), MitR (mitR), MitQ (mitQ), MitP (mitP), MitO (mitO), MitN (mitN), MitM (mitM), MitL (mitL), MitK (mitK), MitJ (mitJ), MitI (mitI), MitH (mitH), MitG (mitG), MitF (mitF), MitE (mitE), MitD (mitD), MitC (mitC), MitB (mitB), MitA (mitA), MmcA (mmcA), MmcB (mmcB), MmcC (mmcC), MmcD (mmcD), MmcE (mmcE), MmcF (mmcF), MmcG (mmcG), MmcH (mmcH), MmcI (mmcI), MmcJ (mmcJ), MmcK (mmcK), MmcL (mmcL), MmcM (mmcM), MmcN (mmcN), MmcO (mmcO), Mrd (mrd), MmcP (mmcP), MmcQ (mmcQ), MmcR (mmcR), MmcS (mmcS), MmcT (mmcT), MmcU (mmcU), MmcV (mmcV), Mct (mct), MmcW (mmcW), MmcX (mmcX), and MmcY (mmcY) genes, complete cds; and unknown genes Length = 63734 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgctccagcgccacgacgac 320 |||||||||||||||||||| Sbjct: 35440 tgctccagcgccacgacgac 35459
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccacaaaacattcacaaatc 70 |||||||||||||||||||| Sbjct: 10690877 ccacaaaacattcacaaatc 10690896
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 472 gcccactccaccaggttgtgctcgccggttgg 503 ||||||||||| || |||||||||||| |||| Sbjct: 116016 gcccactccacgagattgtgctcgccgtttgg 115985
>dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13M13, TM0051b, complete sequence Length = 54022 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 472 gcccactccaccaggttgtgctcgccggttgg 503 ||||||||||| || |||||||||||| |||| Sbjct: 12202 gcccactccacgagattgtgctcgccgtttgg 12233
>emb|AL627306.15| Human DNA sequence from clone RP11-81A9 on chromosome 9, complete sequence Length = 51133 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 ggctgctgctcggcttcctttgca 256 ||||||||||| |||||||||||| Sbjct: 28723 ggctgctgctctgcttcctttgca 28746 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,897,411 Number of Sequences: 3902068 Number of extensions: 3897411 Number of successful extensions: 71524 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71113 Number of HSP's gapped (non-prelim): 411 length of query: 541 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 518 effective length of database: 17,143,297,704 effective search space: 8880228210672 effective search space used: 8880228210672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
