ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd3j09 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/83 (32%), Positives = 46/83 (55%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +WV + +G+ N LTL + + L++VPV+YE++ ++D + A + Sbjct: 1117 DSLKFAVL---MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 1173 Query: 343 KKYYAIFEEKVLSKIPKGALKNK 275 K A K+ +KIP LK K Sbjct: 1174 KDAMA----KIQAKIP--GLKRK 1190
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/72 (29%), Positives = 43/72 (59%) Frame = -3 Query: 490 LWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKV 311 +W+++ +G+ N +TL + +++++VP++YEKY ++D + A + K EK+ Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKS----IVEKI 223 Query: 310 LSKIPKGALKNK 275 +K+P G K K Sbjct: 224 QAKLP-GIAKKK 234
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/83 (31%), Positives = 46/83 (55%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +WV + +G+ N LTL + + L+++PV+YE++ ++D + A + Sbjct: 1087 DSLKFAVL---MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSV 1143 Query: 343 KKYYAIFEEKVLSKIPKGALKNK 275 K A K+ +KIP LK K Sbjct: 1144 KDAMA----KIQAKIP--GLKRK 1160
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/72 (29%), Positives = 43/72 (59%) Frame = -3 Query: 490 LWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKV 311 +W+++ +G+ N +TL + +++++VP++YEKY ++D + A + K EK+ Sbjct: 169 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKS----IVEKI 224 Query: 310 LSKIPKGALKNK 275 +K+P G K K Sbjct: 225 QAKLP-GIAKKK 235
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/83 (31%), Positives = 46/83 (55%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +WV + +G+ N LTL + + L+++PV+YE++ ++D + A + Sbjct: 1088 DSLKFAVL---MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQVQIDHYLGLANKSV 1144 Query: 343 KKYYAIFEEKVLSKIPKGALKNK 275 K A K+ +KIP LK K Sbjct: 1145 KDAMA----KIQAKIP--GLKRK 1161
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 38.1 bits (87), Expect = 0.016 Identities = 23/76 (30%), Positives = 41/76 (53%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ +VD + + Sbjct: 702 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHI 758 Query: 343 KKYYAIFEEKVLSKIP 296 A K+ +KIP Sbjct: 759 NTVVA----KIQAKIP 770
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 38.1 bits (87), Expect = 0.016 Identities = 23/76 (30%), Positives = 41/76 (53%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ +VD + + Sbjct: 705 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHI 761 Query: 343 KKYYAIFEEKVLSKIP 296 A K+ +KIP Sbjct: 762 NTVVA----KIQAKIP 773
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 37.7 bits (86), Expect = 0.022 Identities = 22/76 (28%), Positives = 41/76 (53%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ ++D + + Sbjct: 701 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHI 757 Query: 343 KKYYAIFEEKVLSKIP 296 A K+ +KIP Sbjct: 758 NAVVA----KIQAKIP 769
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 37.7 bits (86), Expect = 0.022 Identities = 22/76 (28%), Positives = 41/76 (53%) Frame = -3 Query: 523 DLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ ++D + + Sbjct: 701 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHI 757 Query: 343 KKYYAIFEEKVLSKIP 296 A K+ +KIP Sbjct: 758 NAVVA----KIQAKIP 769
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = -3 Query: 487 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVL 308 ++L+ +G+ N LTL + V L+TVP+LY ++ ++D + +L A K+ Sbjct: 393 YILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIR 448 Query: 307 SKIP 296 +KIP Sbjct: 449 AKIP 452
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 33.9 bits (76), Expect = 0.31 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -3 Query: 487 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVL 308 ++L+ +G+ N LTL + + L+T+P+LY ++ ++D + +L A K+ Sbjct: 466 YILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIR 521 Query: 307 SKIP-KGAL 284 +KIP GAL Sbjct: 522 AKIPGTGAL 530
>YL185_MIMIV (Q5URB5) Hypothetical protein L185| Length = 392 Score = 32.7 bits (73), Expect = 0.69 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +2 Query: 299 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQH 424 D DL+F + +ILL ++G +I++V ILL DS+QH Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL----DSIQH 184
>PRP5_YARLI (Q6CCZ1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 974 Score = 30.8 bits (68), Expect = 2.6 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = +2 Query: 320 FKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQHHKDYI 439 FK G++ + + + + +++ + L+ NWDS H +DY+ Sbjct: 710 FKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYV 749
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = -3 Query: 511 FLIVIGGLWVLSVL--GSCC--NFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 344 F++ IG + + L C F L +VF++ T+ VL+ Y DK+D++ ++ +L Sbjct: 63 FVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQ---DL 119 Query: 343 KK 338 KK Sbjct: 120 KK 121
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = +1 Query: 283 SKHPSGSSTGPSLQR----WHNTSSTRSWPSHQKHQPCHHTSHTELGQCTAPQ 429 + HPS SS+ S WH ++ + HQ++Q H TE T P+ Sbjct: 263 ASHPSSSSSSSSSSNPNSIWHTSTQQQQQQQHQQNQQNHWQMTTEPSFITKPR 315
>13S1_FAGES (O23878) 13S globulin seed storage protein 1 precursor| (Legumin-like protein 1) [Contains: 13S globulin seed storage protein 1 acidic chain; 13S globulin seed storage protein 1 basic chain] Length = 565 Score = 30.0 bits (66), Expect = 4.5 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +3 Query: 42 PDRVTMLNVEK*AITKINTFQLA*LHFTKRSANHIYMY*YQVVLTRRQAQ*HRT--ILQN 215 P R + N I +N+ L L F + SA H+ +Y ++ R H + + Sbjct: 395 PSRADVFNPRAGRINTVNSNNLPILEFIQLSAQHVVLYKNAILGPRWNLNAHSALYVTRG 454 Query: 216 EGQVEINTDGG 248 EG+V++ D G Sbjct: 455 EGRVQVVGDEG 465
>TSN4_HUMAN (O14817) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) (Novel antigen 2) (NAG-2) Length = 238 Score = 28.9 bits (63), Expect = 10.0 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 12/69 (17%) Frame = -3 Query: 508 LIVIGGLWVLSV-----LGSC-------CNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 365 L++I G +V+++ LG+ F L +VF++ T+ +L+ Y DK+D + Sbjct: 56 LLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYA 115 Query: 364 EKAMIELKK 338 ++ +LKK Sbjct: 116 QQ---DLKK 121
>NU2M_ASCSU (P24877) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 300 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 487 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYD 386 WV SV GS ++L + ++ F L +PVL + +D Sbjct: 88 WVFSVTGSLYDWLLMWFLTFQKLPFLPVLVQLFD 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,310,445 Number of Sequences: 219361 Number of extensions: 1362378 Number of successful extensions: 4225 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4222 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
