ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TENS1_HUMAN (Q9HBL0) Tensin-1 32 1.2
2AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4) 31 1.5
3TENS1_BOVIN (Q9GLM4) Tensin-1 30 2.6
4RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17 29 5.8
5Y586_METJA (Q58006) Putative HTH-type transcriptional regulator ... 29 7.6
6SP3AE_BACSU (P49782) Stage III sporulation protein AE 28 9.9
7GR39B_DROME (P58960) Putative gustatory receptor 39b 28 9.9

>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 95  TRSPASGRLSAFSQSTQSESVPKEPPKGLP 6
           ++SPAS  L AF  +T S   P++PP  LP
Sbjct: 811 SKSPASSSLPAFLPTTHSPPGPQQPPASLP 840



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>AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 366

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 125 SILTSDISRSCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 250
           SILT  I RSC  K   ++   R   ++ LL+    FG ++E
Sbjct: 217 SILTDAIKRSCQHKAEVVEEDERESGMRALLNLGHTFGHAIE 258



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>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 92  RSPASGRLSAFSQSTQSESVPKEPPKGLP 6
           +SPA+   S+F  +TQS   P++PP  LP
Sbjct: 815 KSPATSSSSSFLPTTQSSVGPQQPPASLP 843



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>RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17|
          Length = 688

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 486 GKLRIQAVILSTDRLIGC*DPKSRGKQPRSYAKVPKQSLSGKGSDRAMTTRRWAWKQPSF 307
           G+L+++A+   TDR +G  DP S  + P S  + P Q   G+ +  A       W  P  
Sbjct: 592 GRLKMEAL---TDRELGLIDPDSGDESPHSGGQ-PAQEAPGEPAQAAQNADPETWSLPLS 647

Query: 306 EES 298
           + S
Sbjct: 648 QNS 650



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>Y586_METJA (Q58006) Putative HTH-type transcriptional regulator MJ0586|
          Length = 170

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 486 GKL--RIQAVILSTDRLIGC*DPKSRGKQPRSYAKVPKQSLSGKGS 355
           GKL  ++  VI+    +  C +    GK P++Y+++ K+++ GKG+
Sbjct: 13  GKLTDKLYKVIIEGSEMNVCKECAKFGKSPKTYSRLGKKTIIGKGT 58



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>SP3AE_BACSU (P49782) Stage III sporulation protein AE|
          Length = 405

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 267 VPWS*TSELLRFLQRMAASKPTSWLSSLDHFLFH*VIA*G 386
           +P S    L+ F+    +  P  WL +L  +LFH V+A G
Sbjct: 69  LPESQKGSLMEFINGDKSFSPQEWLKALFSYLFHEVLANG 108



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>GR39B_DROME (P58960) Putative gustatory receptor 39b|
          Length = 369

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 326 LGSSHPLKKA**LTGLAPWHRKCLRAQVIHRSDETLKAAFSSVSSGT---FCQSGKVF 162
           L S HP  K   L GL PW   C +++ + +    +    ++V  G    F QS ++F
Sbjct: 2   LYSFHPYLKYFALLGLVPWSESCAQSKFVQKVYSAILIILNAVHFGISIYFPQSAELF 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,741,781
Number of Sequences: 219361
Number of extensions: 1340006
Number of successful extensions: 3237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3236
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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