Clone Name | rbasd3j05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TENS1_HUMAN (Q9HBL0) Tensin-1 | 32 | 1.2 | 2 | AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4) | 31 | 1.5 | 3 | TENS1_BOVIN (Q9GLM4) Tensin-1 | 30 | 2.6 | 4 | RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17 | 29 | 5.8 | 5 | Y586_METJA (Q58006) Putative HTH-type transcriptional regulator ... | 29 | 7.6 | 6 | SP3AE_BACSU (P49782) Stage III sporulation protein AE | 28 | 9.9 | 7 | GR39B_DROME (P58960) Putative gustatory receptor 39b | 28 | 9.9 |
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>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -3 Query: 95 TRSPASGRLSAFSQSTQSESVPKEPPKGLP 6 ++SPAS L AF +T S P++PP LP Sbjct: 811 SKSPASSSLPAFLPTTHSPPGPQQPPASLP 840
>AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 366 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 125 SILTSDISRSCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 250 SILT I RSC K ++ R ++ LL+ FG ++E Sbjct: 217 SILTDAIKRSCQHKAEVVEEDERESGMRALLNLGHTFGHAIE 258
>TENS1_BOVIN (Q9GLM4) Tensin-1| Length = 1715 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 92 RSPASGRLSAFSQSTQSESVPKEPPKGLP 6 +SPA+ S+F +TQS P++PP LP Sbjct: 815 KSPATSSSSSFLPTTQSSVGPQQPPASLP 843
>RAD17_MOUSE (Q6NXW6) Cell cycle checkpoint protein RAD17| Length = 688 Score = 29.3 bits (64), Expect = 5.8 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -2 Query: 486 GKLRIQAVILSTDRLIGC*DPKSRGKQPRSYAKVPKQSLSGKGSDRAMTTRRWAWKQPSF 307 G+L+++A+ TDR +G DP S + P S + P Q G+ + A W P Sbjct: 592 GRLKMEAL---TDRELGLIDPDSGDESPHSGGQ-PAQEAPGEPAQAAQNADPETWSLPLS 647 Query: 306 EES 298 + S Sbjct: 648 QNS 650
>Y586_METJA (Q58006) Putative HTH-type transcriptional regulator MJ0586| Length = 170 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -2 Query: 486 GKL--RIQAVILSTDRLIGC*DPKSRGKQPRSYAKVPKQSLSGKGS 355 GKL ++ VI+ + C + GK P++Y+++ K+++ GKG+ Sbjct: 13 GKLTDKLYKVIIEGSEMNVCKECAKFGKSPKTYSRLGKKTIIGKGT 58
>SP3AE_BACSU (P49782) Stage III sporulation protein AE| Length = 405 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 267 VPWS*TSELLRFLQRMAASKPTSWLSSLDHFLFH*VIA*G 386 +P S L+ F+ + P WL +L +LFH V+A G Sbjct: 69 LPESQKGSLMEFINGDKSFSPQEWLKALFSYLFHEVLANG 108
>GR39B_DROME (P58960) Putative gustatory receptor 39b| Length = 369 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = -3 Query: 326 LGSSHPLKKA**LTGLAPWHRKCLRAQVIHRSDETLKAAFSSVSSGT---FCQSGKVF 162 L S HP K L GL PW C +++ + + + ++V G F QS ++F Sbjct: 2 LYSFHPYLKYFALLGLVPWSESCAQSKFVQKVYSAILIILNAVHFGISIYFPQSAELF 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,741,781 Number of Sequences: 219361 Number of extensions: 1340006 Number of successful extensions: 3237 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3236 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)